Msca022148.1
Basic Information
- Insect
- Melanostoma scalare
- Gene Symbol
- -
- Assembly
- GCA_949752695.1
- Location
- OX456985.1:25375779-25377737[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-08 1.4e-05 26.5 0.0 2 38 13 49 12 54 0.96
Sequence Information
- Coding Sequence
- ATGTCGGTGGAACGTTATTCTTTTGGGAAAACTCCACctgatgcaataaaaaaagcgGTGGACATGGTGGTAAGAGACCGAATATCTTTGCGGAAAGCGGCTAAAAATACTGGTGTGGCACACCAAACTCTATCACGGTATGTAAAAATTTACAAGGGATCTCCTTCTGCAAGGCTCTACCCAAACTATGCAGTGAACGCCGTGTTTAATAAGGAAGAAGAACTTTCTTTAACGTCCTATATACAAAACTGCTCCACTATGTTCTATGGATTAACTATGCTTGATGTAGGGAGGTTGGCTTACCAGACTGCAGTTGCTAATTCCAAAAAAATGCCGGAGTATtggataaaaaacaaaagagcgaGCACCGATTGGTTAAAACGCTTCCGTAAGAGGAACCCTTCACTTTCTCTTCGCACTCCAGAAGCGTGTAGCCTATCGCGGGCAACCTCGTTTAACAGGCACAATGTTAATAAGTTCTATGACAATTTATTCGACGTCCTATCACGATCTACTGACGGATTTTTTTCAAGAACACGCATATATAATCTTGATGAAACCGGGTTAACAACGGTCCAAATTCCTGCGAAAATTCTTGCACAAAAAGGCATGAAACAAGTTAGTAAAGTAACCAGCGCTGAAAGAGGAACGTTAGTTACCTTGTGTTGCATTGTAAGTGCATCTGGCCAATTCATTCCGCCAGTTATGATTTTTCCGAGAGTGCATTTTAAAGAGCATATGCTGCTCGGTGCACCAGCAGGTACGCTTGGATTGGCAAACCCGTCTGGTTGGATGAACTCGAGTTGTTTCTTTAAAGTGGTGGAGCATTTCGTAAAATTCACATCTAGCTCAAAAGAAAATCCTACTTTGTTGTTGATGGACAATCACGAAAGTCACATCAGCGTTTCTGCTCTCAATTATGGAAAAGACCATGGCGTTATAATGTTAACTTTTCCGCCACATTCGTCGAACAAAATGCAACCACTGGATGTCTCCGTTTATAGACCGTTTAAAACAGCATATAACCAAGCGGTAGACTCATTTATGATGCAGAATCCCGGTAAGACGTTTTCGATTTACGACATTGCAAAAGCTGCGAACTACGCTTTTGATAAGTCGATGACACCATCGAACATAAAAGCAGGATTTCAAAAGCCCGGAATCTATCCTCCGGACAGAAATGCTTTCACTGACGTTGACTTTATGAGCAGTTTGGTTACTGACAGGCCCTTAATTGATAACGAAGTACGCCCAAGCGCAAGTGGCGAAATACCGACACTCATCATACCAGAAAGACCTGACCTTATGGGAGAAAcaattttgaatgttttaaaTCAACCCATACGTTCCAAACCGCAAATTGATTTTATCAGCCCAGAACAGTTCAAAGGGTACCCCAGAGCTGCTCCAAGACAGAATAAGAGGAAACAACGAAAAAAGGGGAGAAGTACGATACTGACGGACACCCCGGAAAAAGAAGAATTAGAAAAGAgagaattgttgaaaaaaactcCAAAAAGAAAGGctcaagcaattaaaaaaaaagtatttcaaaCCGAGTCGGAATCAGATGGCATTGAAGAAATGATTCTTCAAGACATTTCTTTGGACGATTCCTTTGTCAGTGAGCGGTCTACGGAGGAAAATTTTCCGCAAGAAGTCAAAACTGGGACCTATGTTTTGGTTCGATTCAATGCcgacaaaaataaaacagtttTCTATATTGGTCAAATAATAACGGAGAAGGATGAAACCAACCActacaaaattttcttcttgcGAAGAAGCGGCACAAGAAATAAGTTTACTACGCCTGAAGTTGAGGATATTGCTTACGTAGCACACAAAGATATAGAGCTGATTCTGCCAACGCCGACGTCATGTGGCCACACTAGTCGCCAAAATGCTTCAGTTATGTTCAATGTTGACTTCCAGGGCTATGGAAGCAGCCTtaaatga
- Protein Sequence
- MSVERYSFGKTPPDAIKKAVDMVVRDRISLRKAAKNTGVAHQTLSRYVKIYKGSPSARLYPNYAVNAVFNKEEELSLTSYIQNCSTMFYGLTMLDVGRLAYQTAVANSKKMPEYWIKNKRASTDWLKRFRKRNPSLSLRTPEACSLSRATSFNRHNVNKFYDNLFDVLSRSTDGFFSRTRIYNLDETGLTTVQIPAKILAQKGMKQVSKVTSAERGTLVTLCCIVSASGQFIPPVMIFPRVHFKEHMLLGAPAGTLGLANPSGWMNSSCFFKVVEHFVKFTSSSKENPTLLLMDNHESHISVSALNYGKDHGVIMLTFPPHSSNKMQPLDVSVYRPFKTAYNQAVDSFMMQNPGKTFSIYDIAKAANYAFDKSMTPSNIKAGFQKPGIYPPDRNAFTDVDFMSSLVTDRPLIDNEVRPSASGEIPTLIIPERPDLMGETILNVLNQPIRSKPQIDFISPEQFKGYPRAAPRQNKRKQRKKGRSTILTDTPEKEELEKRELLKKTPKRKAQAIKKKVFQTESESDGIEEMILQDISLDDSFVSERSTEENFPQEVKTGTYVLVRFNADKNKTVFYIGQIITEKDETNHYKIFFLRRSGTRNKFTTPEVEDIAYVAHKDIELILPTPTSCGHTSRQNASVMFNVDFQGYGSSLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00240616;
- 90% Identity
- -
- 80% Identity
- -