Ecor001420.1
Basic Information
- Insect
- Eupeodes corollae
- Gene Symbol
- -
- Assembly
- GCA_945859775.1
- Location
- CAMAOS010000017.1:1088409-1090364[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.7e-07 0.0002 21.8 0.0 5 38 16 49 15 53 0.94 2 2 3.9 1.7e+03 -0.3 0.0 15 28 628 641 627 642 0.91
Sequence Information
- Coding Sequence
- ATGTCGGTGGAGCGTTATTCCTTTGGGAAAACTCCAAGCAATGTTATGAAAAAAGCGGTGGATATGGTGGTAAAGGAGGGAGTTTCATTGCGAAATGCTGCTAAAAATAATGGTGTGGCATTCCAAACCCTTTCGCGGTATGTGAAAGTTTTCAAAGAATCTCCTTCTGCAAGATTATACccgaactacgcagtaaatgccgtgtttagtaaggaagaagaactatctctagcggactatataaaaaactgctccactatgttttacgggttgactttgctagatgtagcgcgtttggcttatgagacggcagttgctaactccaaaaaaatgccagaatattggataaaaaacaagaaagcgagcactgactggctcaagcgcttccgtaaaagaaatcctacacttgcccttcgcactccagaggcatgcagcctatctcgggcaacttcgttcaataggcacaatgttaacaagttttatgacaacttattcgacgtcctgtcacgatcttcagacggattttcttcaggaactcgtatttataatctggacgaaaccggggtaacaacggtccagattcctgcgaaaattcttgcacaaaaaggaatgaaacaagtcagtaaagtaaccagcgctgaaagaggaacgttagtcaccttgtgttgcattgtaagtgcaactggccaatacatccctccagtaatgatttttcccagagtgcattttaaagaccatatgctgcttggtgcacctgcaggtacacttggtttggcaaatccatccgggtggatgaactcgacatgttttttcaaagtggtggaacattttgtgaaatttacatcttgttccaaagaaaatcctaccttgttgttgatggacaatcacgaaagccacatcagcgtagccgctctcaattatggaaaagaacatggtgtaataatgatgacttttccaccacattcgtcgaacaaaatgcagccactggatgtctccgtctataaaccgtttaaaacggcgtacaaccaagcgatagactcattcatgatgcagaatcctggtaagacgttttccatttacgacatagcaaaagcagttggttacgcttttgataagtcgatgacaccatccaacatcatggcagggtttcaaaagcctggaatctatcctccggacagaaatgctttcactgatgtggactttATGAGTAGTTTGGTCACCGACAGGCCTCTTATTGATGCAACTGAGGAAACAGAACCAAGCGATGGAGTATCGACACTCAACACACCAGGAAGAACTGACCTTGAAGGAGAAACAATTTTAAATCAACCCGGACGTCAAAAACCGCAAACTGTTTTTATCAGCCCAGAACAGTTTAAAGGCTACCCCAAGGCTGCACCAAGACAGAAGAATAAGAGGAAGCAACGGAAAAAAGGAAGGAGTACGATACTGACGGACACGCCGGAAAAAGAAGAATTAGAAAAGAAAGAATTGTTAAAAAGGACACCAAAAACGAAGATTCAAGCTGTCAAAAAACGAAAGATACTACAATCTGAGTCTGAATCAGATGACAATGATGACATAATTCTTCAAGATTGCTCTTTAGACGGTTCGTTCGTCAGTGTGCGCTCTACGGAGGAAATTTTTTCACAGGAAGTTAAAACTGGGGCCTATGTCTTGGTTCGATTCAATGCGGACAAAAATAAAAGAGTTTATTATATTGGCGAAATAATAAAGGACAAGGACGAAAGCAATCACTACCAAATTCTTTTCCTGCGGAGGAGCGGTACAAGGAATAAATTCACTGAGCCTGAAGTTGAGGATATTGCGTCAGTAGCACACGAAGATATAGAGCTGGTGCTGCCAACGCCGACTCCATGTGGTCACACTAGTCGCCAAAAGGCATCTGTTATGTTTGATGTTGACTTCCAGGGCTATGGAAGCAGCCTCAAGTGA
- Protein Sequence
- MSVERYSFGKTPSNVMKKAVDMVVKEGVSLRNAAKNNGVAFQTLSRYVKVFKESPSARLYPNYAVNAVFSKEEELSLADYIKNCSTMFYGLTLLDVARLAYETAVANSKKMPEYWIKNKKASTDWLKRFRKRNPTLALRTPEACSLSRATSFNRHNVNKFYDNLFDVLSRSSDGFSSGTRIYNLDETGVTTVQIPAKILAQKGMKQVSKVTSAERGTLVTLCCIVSATGQYIPPVMIFPRVHFKDHMLLGAPAGTLGLANPSGWMNSTCFFKVVEHFVKFTSCSKENPTLLLMDNHESHISVAALNYGKEHGVIMMTFPPHSSNKMQPLDVSVYKPFKTAYNQAIDSFMMQNPGKTFSIYDIAKAVGYAFDKSMTPSNIMAGFQKPGIYPPDRNAFTDVDFMSSLVTDRPLIDATEETEPSDGVSTLNTPGRTDLEGETILNQPGRQKPQTVFISPEQFKGYPKAAPRQKNKRKQRKKGRSTILTDTPEKEELEKKELLKRTPKTKIQAVKKRKILQSESESDDNDDIILQDCSLDGSFVSVRSTEEIFSQEVKTGAYVLVRFNADKNKRVYYIGEIIKDKDESNHYQILFLRRSGTRNKFTEPEVEDIASVAHEDIELVLPTPTPCGHTSRQKASVMFDVDFQGYGSSLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00240616;
- 90% Identity
- iTF_00693717;
- 80% Identity
- -