Bvim020983.1
Basic Information
- Insect
- Brachylomia viminalis
- Gene Symbol
- -
- Assembly
- GCA_937001565.2
- Location
- CAKZJP020000209.1:537440-540531[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.9 2.6e+02 3.9 3.9 2 23 2 23 1 23 0.97 2 18 4.4e-05 0.0063 18.5 0.1 1 23 27 49 27 49 0.95 3 18 0.0011 0.15 14.1 2.7 1 23 54 77 54 77 0.97 4 18 0.2 29 7.0 0.6 2 19 85 102 84 107 0.77 5 18 0.00011 0.016 17.2 1.4 2 23 115 137 114 137 0.97 6 18 5.9e-05 0.0084 18.1 0.9 1 23 143 165 143 165 0.98 7 18 2.1e-05 0.003 19.5 0.8 1 23 171 193 171 193 0.98 8 18 2.1e-05 0.0029 19.5 0.1 1 22 199 220 199 220 0.96 9 18 0.0027 0.39 12.8 1.0 1 23 288 311 288 311 0.93 10 18 0.31 44 6.4 0.0 2 21 340 359 339 362 0.89 11 18 1.9 2.6e+02 3.9 3.9 2 23 385 406 384 406 0.97 12 18 4.4e-05 0.0063 18.5 0.1 1 23 410 432 410 432 0.95 13 18 0.0011 0.15 14.1 2.7 1 23 437 460 437 460 0.97 14 18 0.75 1.1e+02 5.2 2.1 2 21 468 487 467 490 0.76 15 18 5.3e-05 0.0075 18.2 1.3 2 23 498 520 497 520 0.97 16 18 0.00017 0.024 16.6 1.1 1 23 526 548 526 548 0.98 17 18 2.1e-05 0.003 19.5 0.8 1 23 554 576 554 576 0.98 18 18 2.8e-06 0.0004 22.2 0.5 1 23 582 605 582 605 0.98
Sequence Information
- Coding Sequence
- ATGAAATGTTGTGTGTGCTCCAGTATTTTTGAAAAGTTTAGGAGTTTGCTAGAACACATGCACATTCACTATAGGAATTTTATATGTGATGAGTGTGACATGGGTTTCATAACCAAAGGAAGTCTCAGGCGACACGTCACCGAACATACAACGGGCGTTTTCAAATGTAATTCGTGCTCTAAAACCTTTGATACTAAGAAGAAGGCACGGCGTCATGAAAAAGTTGTTCACGTAGATAAGGGTTTTAGTAGTAAGTGTGGGTACTGTAACGAGAGATTTAGGAATCCTATGAGAAGGGATGAGCATTTGGTGAAAACACATGGAGTCAAGTTGAAGGTTATCAAATGTCATGCGTGCGACAGGACGTTTCCTACCACATACGCACTAAGGATACACACGAGACGAGACCACTTGATGGAGAGACGGTTTAAATGTACACAGTGCGATAAGGCATTTTTCCAAGCTGCCGATTTAAAGTTTCACATGATAACGCATACAAAAACAAGAGAGTTCCAATGTACTGTGTGCCTAAAGTCATACGGTCGAAAGGAAACTTTAAGGCAGCATATGGAAATACACAGTGATATTAGACGGTTTAAATGCGAGTACTGCGGTCAGGCTTTTGTGCAGAAAGCAAGCTGGAAGGGACACATGAGGAGTACTCGAGGTAAACCTAGCGAGGATCCTGAAACATATAATGAAGATAAATCACAACGGAAAAAAGGAAAACAAAGAGCTATCTCTAAAAGCACTAAAGCTATGTTAGAAATGATTGAAGAGATGAAGAAACACCACATAAATCTGAAAGAAATACTAACTTGCTCCAATGCTACGCCCTTTGTCGGAGTCAATTATCTAGGTTATCTGTGTTGCTACTGCGATTCTCAGTATTCAGACCCTGCAGCCCTGAAGAAACACACACGTGACATTCATAAAGGCGAATACAACTCCGTAATAccaaatgttaataaaaatataaaagacgAATTTTGTATGAGGCTGGATATAACTGACTTACAATGCACACTTTGCGACGCTGACATAGACACACTAGAAAATTTGTTGAAACATCTAGGAGGTGACCACAATAGAGATATACATACGGAAATCAAAAACCAACTGCTTCCATTTAAGTTTAACAGCGAAACCATGAAATGTTGTGTGTGCTCCAGTATTTTTGAAAAGTTTAGGAGTTTGCTAGAACACATGCACATTCACTATAGGAATTTTATATGTGATGAGTGTGACATGGGTTTCATAACCAAAGGAAGTCTCAGGCGACACGTCACCGAACATACAACGGGCGTTTTCAAATGTAATTCGTGCTCTAAAACCTTTGATACTAAGAAGAAGGCACGGCGTCATGAAAAAGTTGTTCACGTAGATAAGGGTTTAAGTAGTAAGTGTGGGTACTGTAACCAGAGATTTAGGAATCATATAAGAAGGGATGAGCATTTGGAGAAAACACATGGAGTCAAATTGAAGGTTATCAAATGTCATGCGTGCGACAGGACGTTTCCTAACACAAGCGCACTAAGGATCCACACGAGAAGAGACCACTTGATCGAGCGACGGTTCAAATGTACGCAATGCGATAAGGCATTTTTCAAAGCTGCCGATTTAAAGTTTCACATGATAACGCATACAAAAACAAGAGAGTTCCAATGTACTGTGTGCCTGAAGTCATACGGTCGAAAGGAAACTTTAAGGCAGCATATGGAAATACACAGTGACATTAGACGGTTTAAATGCGAGTACTGCGGTCAGGCTTTTGTGCAGAAAGCAAGCTGGAAGGGACACATGAGGAGTAAGCACGAGGAACTGGTCTGA
- Protein Sequence
- MKCCVCSSIFEKFRSLLEHMHIHYRNFICDECDMGFITKGSLRRHVTEHTTGVFKCNSCSKTFDTKKKARRHEKVVHVDKGFSSKCGYCNERFRNPMRRDEHLVKTHGVKLKVIKCHACDRTFPTTYALRIHTRRDHLMERRFKCTQCDKAFFQAADLKFHMITHTKTREFQCTVCLKSYGRKETLRQHMEIHSDIRRFKCEYCGQAFVQKASWKGHMRSTRGKPSEDPETYNEDKSQRKKGKQRAISKSTKAMLEMIEEMKKHHINLKEILTCSNATPFVGVNYLGYLCCYCDSQYSDPAALKKHTRDIHKGEYNSVIPNVNKNIKDEFCMRLDITDLQCTLCDADIDTLENLLKHLGGDHNRDIHTEIKNQLLPFKFNSETMKCCVCSSIFEKFRSLLEHMHIHYRNFICDECDMGFITKGSLRRHVTEHTTGVFKCNSCSKTFDTKKKARRHEKVVHVDKGLSSKCGYCNQRFRNHIRRDEHLEKTHGVKLKVIKCHACDRTFPNTSALRIHTRRDHLIERRFKCTQCDKAFFKAADLKFHMITHTKTREFQCTVCLKSYGRKETLRQHMEIHSDIRRFKCEYCGQAFVQKASWKGHMRSKHEELV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01527586; iTF_00039075; iTF_00375554;
- 90% Identity
- -
- 80% Identity
- -