Alyc042183.1
Basic Information
- Insect
- Agrochola lychnidis
- Gene Symbol
- -
- Assembly
- GCA_963680765.1
- Location
- OY796877.1:8116814-8121779[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00016 0.02 16.7 0.3 1 23 32 55 32 55 0.97 2 20 0.03 3.8 9.5 0.1 2 23 84 106 83 106 0.95 3 20 4.8 5.9e+02 2.6 4.3 2 23 129 150 128 150 0.97 4 20 0.00036 0.045 15.6 0.0 1 23 154 176 154 176 0.95 5 20 0.0005 0.063 15.1 2.1 1 23 181 204 181 204 0.97 6 20 1.1 1.3e+02 4.7 1.1 2 14 212 224 211 234 0.76 7 20 0.00072 0.09 14.6 0.6 2 23 242 264 241 264 0.97 8 20 0.00018 0.023 16.5 0.9 1 23 270 292 270 292 0.98 9 20 2.7e-05 0.0033 19.2 0.8 1 23 298 320 298 320 0.98 10 20 2.5e-05 0.0031 19.2 0.3 1 22 326 347 326 347 0.96 11 20 0.0023 0.29 13.1 0.2 1 23 415 438 415 438 0.94 12 20 0.02 2.5 10.1 0.5 2 23 467 489 466 489 0.94 13 20 4.4 5.4e+02 2.8 4.7 2 23 512 533 511 533 0.97 14 20 6e-05 0.0074 18.1 0.1 1 23 537 559 537 559 0.97 15 20 0.006 0.74 11.8 3.4 1 23 565 588 565 588 0.96 16 20 1.3 1.6e+02 4.4 0.4 2 12 596 606 595 614 0.90 17 20 0.00019 0.023 16.5 0.2 2 23 626 648 625 648 0.97 18 20 0.0011 0.14 14.1 1.4 1 23 654 676 654 676 0.98 19 20 2.7e-05 0.0033 19.2 0.8 1 23 682 704 682 704 0.98 20 20 9.7e-06 0.0012 20.5 1.3 1 23 710 733 710 733 0.97
Sequence Information
- Coding Sequence
- ATGATGGAAGAAATGAAGAAACACCACACAAACCTTAAAGAAATTCTTATTTGCTCCAATGCTACGCCCTTTGTCGGAGTCAATTATCGAGGTTTTGTGTGTTCCTACTGCGATTCACAGTATCCAGACCCTGCAGCCCTGAAGAAACATACTCGTAAGAATCATAAAGGACTATACGACTCCGTAATaccaaatgttaataaaaacataaaagacgAATTCTGTATGAGGCTGGACATAACTGATTTACAATGCTCACTTTGCGATACTGACATAGACACACTAGAAAACTTGTTAAAACATCTAGAAAGTGACCACAATAGAGATATACATACGGAAATCAAAAACCAACTGTTTCCATTTAAGTTTAACAGCGAAACCATGAAATGCTGTTTGTGCTCCAGTATTTTTGAAAAGTTTAGAAGTTTGCTAGAACACATGCACATTCACTATAGGAATTTTGTATGTGATGAGTGTGACATGGGTTACATAACCAAAGGAGGTCTCAGGCGACATGTCGCCGAACATACAACGGGCGTTTTCAAATGTAATTTGTGCTCAAAAACCTTTGAAACTAACAAGAAGGCAGAGCGTCATAAAAAAGTTGTTCACGTATACAAGGGTTTGAGGAGTAAGTGTGGGTACTGTAATGAGAAATTTAATAATCATGTGAGAAGAGATGAGCACTTGGTGAAAATGCATGGAGTCAAGTTGAAAGTTGTCAAATGTAATGCGTGCGTCAGGACATTTCCTAACACAAGCTCACTAAGGATCCACACGAGACGAGACCACTTGATGGAGAGACGGTTCAAATGTACACAATGCGATAAGGCATTTTTCCAAGCTGCCGATTTAAAGTTTCACATGGTAACGCATACAAAAACAAGAGATTTCCAATGTACTGTGTGCCTGAAGTCATATGGCCGGAAGGAAACTTTAAGGCAGCATATGGAAATACACAGTGACACAAGACGGTTTAAATGCGAGCACTGCGGTCAGGCATTTGTGCAGAAAGCCAGCTGGAAAGGGCACATGAGGAGTACTCGAGATATACCAATCAGGCATCCTAAAACATATAATGAAGTTAAATCCAAACggagaaaaggaaaaaaagaacTTAACTGTAAGGTCACTGAAGCGAGATTAGAAATGATGGAAGAAATGAAGAAACACCACACAAATCTTAAAGAAATTCTAACTTGCTCCAATGCTACACCCTTCGTCGGAGTCGATTATCAAGGTTATTTGTGTTCCTACTGCGATTCACAGTATCCAGACCCTGCAGCCCTGAAGAAACATACTCGTGACAATCATAAAGGATTATACGACTCTGTAATACCAAGTGCTTATAAGAACACTCTAGAAGAGTTTTGTATAAGGCTGGATATAACTGATTTACGATGTACACTCTGCCACACTGACATAGTCACATTAGaaaatttgataaaacatcTAAAAGGTGATCACAAAAGAGATATACATACGGAAATCAAAAACCAActcattccatttaaatttAACAGCGAAACCATGAAATGTTGTTTGTGCTCAAGTGTTTTTGAAAAGTTTAGGAAATTGCTTGAACACATGCACATTCATTACAGGAATTTTATTTGCGATGAGTGTGACAGAGGATTTATAATCAAAGGAAGCCTCAGGCGACACATTGCCTCACATACATCCGTGGGCGTacataaatgtaatttgtgCTCAAAAACCTTTGAAACTAAGCAGAAGGTACAGTATCATGAAAAAGTTATTCACGTAAACAAGGGTTTGAAGAATAAGTGTGGGTACTGTAATGAGAAATTTAAGAGTTTTATTAGAAGAGATGAGCACTTGGTGGAAATGCATGGAGTCAAGTTGAAGGTTGTGAAATGTAATGCGTGCGACAGGACGTTTCCTAACACAGGCGCATTAAGGGTCCACACGAGACGAGATCACTTGATGGAGAGACGGTTCAAATGTACACAATGCGATAAGGCATTTTTCAAAGAGGCCGATTTAAAGTTTCACATGGTAACGCATACTAAAACAAAAGAGTTTCAATGTACTGTGTGCCTGAAGTCATATGGCCGGAAGGAAACTTTAAGGCAGCATATGGAAATACACAGTGATATTAGACGGTTTAAATGTGAGCACTGTGGTCAGGCATTTGTGCAGAAAGCCAGCTGGAAAGGGCACATGAGGAATAGGCACGGCGAAGTTCACTAA
- Protein Sequence
- MMEEMKKHHTNLKEILICSNATPFVGVNYRGFVCSYCDSQYPDPAALKKHTRKNHKGLYDSVIPNVNKNIKDEFCMRLDITDLQCSLCDTDIDTLENLLKHLESDHNRDIHTEIKNQLFPFKFNSETMKCCLCSSIFEKFRSLLEHMHIHYRNFVCDECDMGYITKGGLRRHVAEHTTGVFKCNLCSKTFETNKKAERHKKVVHVYKGLRSKCGYCNEKFNNHVRRDEHLVKMHGVKLKVVKCNACVRTFPNTSSLRIHTRRDHLMERRFKCTQCDKAFFQAADLKFHMVTHTKTRDFQCTVCLKSYGRKETLRQHMEIHSDTRRFKCEHCGQAFVQKASWKGHMRSTRDIPIRHPKTYNEVKSKRRKGKKELNCKVTEARLEMMEEMKKHHTNLKEILTCSNATPFVGVDYQGYLCSYCDSQYPDPAALKKHTRDNHKGLYDSVIPSAYKNTLEEFCIRLDITDLRCTLCHTDIVTLENLIKHLKGDHKRDIHTEIKNQLIPFKFNSETMKCCLCSSVFEKFRKLLEHMHIHYRNFICDECDRGFIIKGSLRRHIASHTSVGVHKCNLCSKTFETKQKVQYHEKVIHVNKGLKNKCGYCNEKFKSFIRRDEHLVEMHGVKLKVVKCNACDRTFPNTGALRVHTRRDHLMERRFKCTQCDKAFFKEADLKFHMVTHTKTKEFQCTVCLKSYGRKETLRQHMEIHSDIRRFKCEHCGQAFVQKASWKGHMRNRHGEVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00238011;
- 90% Identity
- -
- 80% Identity
- -