Xtog049873.1
Basic Information
- Insect
- Xanthia togata
- Gene Symbol
- -
- Assembly
- GCA_963853775.1
- Location
- OY970818.1:6765099-6770179[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.28 40 6.5 0.4 2 14 4 16 3 26 0.81 2 14 0.00025 0.035 16.1 1.3 2 23 34 56 33 56 0.97 3 14 0.003 0.43 12.7 1.4 1 23 62 84 62 84 0.97 4 14 1.8e-05 0.0026 19.7 0.8 1 23 90 112 90 112 0.98 5 14 1.7e-05 0.0025 19.8 0.3 1 22 118 139 118 139 0.96 6 14 0.0072 1 11.5 0.9 1 23 208 231 208 231 0.93 7 14 0.01 1.4 11.1 0.2 2 23 260 282 259 282 0.95 8 14 9.7e-05 0.014 17.4 0.0 1 23 330 352 330 352 0.95 9 14 0.00094 0.13 14.3 3.0 1 23 357 380 357 380 0.96 10 14 0.5 70 5.7 0.5 2 13 388 399 387 410 0.81 11 14 6.2e-05 0.0088 18.0 0.4 2 23 418 440 417 440 0.97 12 14 0.033 4.6 9.5 1.3 1 23 446 468 446 468 0.90 13 14 1.8e-05 0.0026 19.7 0.8 1 23 474 496 474 496 0.98 14 14 4e-06 0.00056 21.8 1.4 1 23 502 525 502 525 0.98
Sequence Information
- Coding Sequence
- ATGACGAGTAAGTGTGGGTACTGTAATGAGAGATTTAAGAATTATACGAGAAGGGATGAGCACTTGGTGGAAATACATGGGGTCAAGTTGAAAGTTGTCAAATGTCATGCGTGCGACAGGACATTTCCTAACACAAACGCACTAAGGATCCACACGAGACGAGACCACTTGATGGAGAGACGGTTCAAATGTACACAATGTGATAAGGCATTTTTCAAAGATGCCGATTTAAAGTTTCACATGGTAACGCATACAAAAACAAGAGAATTCCAATGTACTGTGTGCCTGAAGTCATATGGCCGGAAGGAAACTTTAAGGCAGCATATGGAAATACACAGTGACATTAGACGGTTTAAATGCGAGCACTGCGGTCAAGCATTTGTGCAGAAAGCCAGCTGGAAGGGGCATATGAGGAGTACACGAGACAAACCAATCAGGCAtctaaaaacaaataatgaagATACACCCAAACAGagaaaaggaaaaaaaggaCTTCCCTGTAAGATCACTAAAGCTAGGTTAGAAATGATGGGAGAAATGAAGAAACACCACACAAATCTTAAAGAAATTCTAACTTGCTCCAATGCGACGCCCTTTGTCGGAGTCACTTATCAAAGTTATTATTTGTGTTGCTACTGCGATTCTCAGTATCCAGACCCTGCCGCCCTGAAGAAACATACTCGTGACAATCATAAAGGACTATATGACTCCGTCATACcaaatgttaataaaaacatCAAAGATGAATTTTGTATGAGGCTGGATATAACTGATTTACAATGCTCACTTTGCGACACTAACATAGACACACTAGAAAACTTGTTAAAACATCTAGAAAGAGACCACAATAGATATATACATACGGAAATCAAAAACCAACTCTTTCCTTTTAAGTTTAACAGCGAAACCATGAAATGTTGTTTGTGCTCTagtatttttgaaaagtttaagaGGTTGCTTGAACACATGCACATTCATTACAGGAATTTTATTTGTGATGAGTGTGACATGGGATTTATAACCAAAGGAGGTCTCAGGCGACATGTCGCCGAACATGCAACAGGCGTTTTCAAATGTAATTTGTGTTCAAAAACCTTTAAAACTAAGAAGAAGGCACAATATCATGAAAAAATTGTTCACGTAAACAAGGGCTTGAAGAATAAGTGTGGATACTGTAATGagaaatttaagaattttatcaagagaGATGAGCACTTGGTGGAAGTGCATGGAGTCAAGTTGAAAGTTGTCAAATGTAATGCGTGCGACAGGACGTTTCCTAACACAAGCGGACTAAGGGTCCATACGAGACGAGATCACTTGATGGAGAGACGGTTCAAATGTACACAATGCGATAAGGCATTTTTCAAAGATGCCGATGTAAAGTTTCACATGGTAACGCATACAAAAACAAGAGAGTTCCAATGTACTGTGTGCCTGAAGTCATATGGCCGGAAGGAAACATTAAGGCAGCATATGGAAATACACAGTGACATTAGACGGTTTAAATGCGAGCACTGCGGTCAGGCATTTGTGCAGAAAGCCAGCTGGAAGGGGCACATGAGGAGTAAGCACGGCGAACTGGTCTGA
- Protein Sequence
- MTSKCGYCNERFKNYTRRDEHLVEIHGVKLKVVKCHACDRTFPNTNALRIHTRRDHLMERRFKCTQCDKAFFKDADLKFHMVTHTKTREFQCTVCLKSYGRKETLRQHMEIHSDIRRFKCEHCGQAFVQKASWKGHMRSTRDKPIRHLKTNNEDTPKQRKGKKGLPCKITKARLEMMGEMKKHHTNLKEILTCSNATPFVGVTYQSYYLCCYCDSQYPDPAALKKHTRDNHKGLYDSVIPNVNKNIKDEFCMRLDITDLQCSLCDTNIDTLENLLKHLERDHNRYIHTEIKNQLFPFKFNSETMKCCLCSSIFEKFKRLLEHMHIHYRNFICDECDMGFITKGGLRRHVAEHATGVFKCNLCSKTFKTKKKAQYHEKIVHVNKGLKNKCGYCNEKFKNFIKRDEHLVEVHGVKLKVVKCNACDRTFPNTSGLRVHTRRDHLMERRFKCTQCDKAFFKDADVKFHMVTHTKTREFQCTVCLKSYGRKETLRQHMEIHSDIRRFKCEHCGQAFVQKASWKGHMRSKHGELV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00238011;
- 90% Identity
- -
- 80% Identity
- -