Ctra044335.1
Basic Information
- Insect
- Cosmia trapezina
- Gene Symbol
- -
- Assembly
- GCA_905163495.1
- Location
- LR991047.1:8889892-8896404[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0023 0.31 13.1 0.4 1 23 75 98 75 98 0.94 2 20 0.26 35 6.6 0.0 2 23 127 149 126 149 0.92 3 20 0.076 10 8.3 2.6 2 23 172 193 171 193 0.97 4 20 6.5e-05 0.0089 17.9 0.1 1 23 197 219 197 219 0.95 5 20 0.00059 0.08 14.9 2.6 1 23 224 247 224 247 0.96 6 20 0.62 84 5.4 0.5 2 13 255 266 254 277 0.85 7 20 0.00021 0.028 16.4 0.4 2 23 285 307 284 307 0.96 8 20 0.0023 0.31 13.1 0.7 1 23 313 335 313 335 0.97 9 20 4.4e-06 0.0006 21.6 1.3 1 23 341 363 341 363 0.98 10 20 5.6e-05 0.0076 18.1 0.4 1 21 369 389 369 390 0.96 11 20 0.0023 0.31 13.1 0.4 1 23 464 487 464 487 0.94 12 20 0.26 35 6.6 0.0 2 23 516 538 515 538 0.92 13 20 0.076 10 8.3 2.6 2 23 561 582 560 582 0.97 14 20 5.8e-05 0.0078 18.1 0.1 1 23 586 608 586 608 0.95 15 20 0.01 1.4 11.0 4.5 1 23 613 636 613 636 0.96 16 20 2 2.8e+02 3.8 0.2 2 12 644 654 643 664 0.88 17 20 0.0016 0.21 13.6 0.3 2 23 674 696 673 696 0.96 18 20 0.00064 0.086 14.8 0.9 1 23 702 724 702 724 0.98 19 20 4.4e-06 0.0006 21.6 1.3 1 23 730 752 730 752 0.98 20 20 3.6e-06 0.00049 21.9 2.4 1 23 758 781 758 781 0.98
Sequence Information
- Coding Sequence
- ATGGCCGGTACTCGAGGTAAACCTATCGAGGATCCGGAATGGGATCCTAAAACAAATAGTGAAGATAAACCAAAACGGAAACAAGTGAAAAAAAGAGACATCTCTAAGGTCACTAAAGCGAGGTTAGAAATTATGGAAGAAATTAAGAAACACCACACAAATCTCAAGGAAATTCTAACTTGCTCCAATGCTACGCCCTTTGTCGGAATAAATTATCGAGGTTACTTGTGTTCCTACTGTGATTCTCAGTATCCAGACCCTGCTACCCTTAAGAAACATACTCGTGACAATCATAAAGGACTATACGAGTCCGTAATACCAAGTGTTAATAAGAACACTATAGACGAGTTTTGTATAAGGCTGGATATAACTGATTTACGATGCACACTCTGCGACGCTGACATAGACACACtagaaaacttattaaaacatCTAGAAGGTGATCACAAAAGAGATATACATTCGGAAATCAAAAACCAACTCTTTCCATTTAAGTTTAACAGCGAAACCATGAAATGTTGTTTGTGCTcaagtgtttttgaaaagtttAGAAGTTTGCTTGAACACATGCGCATTCATTACAGGAATTTTATTTGCGATAAGTGTGACATGGGATTTATAACCAAAGGAAGCCTCAGGCGACACGTCGCCGAACATGCAACAGGAGTTTATAAATGTAATTTGTGCTCAAAAACCTTTGAAACTAAGAAGAAGGCACAGCGtcatgaaaaaaatgttcacgTAAACAAGGGTTTGAAGAGTAAGTGTGGGTACTGTAATGAGAAATTTAAGAATCATATAAGAAGGGATGAGCACTTGGTCGAAATGCATGGAGTCAAGTTAAAGATTATCAAATGTCAGGCGTGCGACAGGACGTTTCCTAACACATACGCACTAAGGGTCCACACGAGACGAGACCACTTGATGGAGAGACGGTTCAAATGTACACAATGCGATAAGGCATTTTTCCAAGCCGCAGACGTAAAGTTTCACATGGTAACGCATACAAAAACGAGAGAGTTTCAATGTACTGTGTGCCTGAAGTCATATAGCCGGAAGGAAACTTTAAGGCAGCATATGGAAATACACAGTGACATTAGACGGTTTAAATGCGAACACTGCGGTCAAGCATTTGTGCAGAAAGCCAGCTGGAAGGGGCACATGAAGAGTAGTCGAGGTAAACGTATTGAGGATCCGGAATGGGATCCTAAAACAAATAATGAAGATAAACCAAAAcggaaaaaagacaaaaaaagagCTATCCCTAAGATGACTAAAGCGAGGAGGAGGTTAGAAATGATGGAAGAAATTAAGAAACACCACACAAATCTCAAGGAAATTCTAACTTGCTCCAATGCTACGCCCTTTGTAGGAATAAATTATCGAGGTTACTTGTGTTCCTACTGTGATTCTCAGTATCCAGACCCTGCTACCCTTAAGAAACATACTCGTGACAATCATAAAGGACTATACGAGTCCGTAATACCAAGTGTTAATAAGAACACTATAGACGAGTTTTGTATAAGGCTGGATATAACTGATTTACGATGCACACTCTGCGACGCTGACATAGACACACtagaaaacttattaaaacatCTAGAAGGTGATCACAAAAGAGATATACATTCGGAAATCAAAAACCAACTCTTTCCATTTAAGTTTAACAGCGAAACCATGAAATGTTGTTTGTGCTcaagtgtttttgaaaagtttAGAAGTTTGCTTGAACACATGCGCATTCATTACAGGAATTTTATTTGCGATGAGTGTGATATGGGATTTATAACCAAAGGAAGCCTCAGGCGACACGTCGCCGAACATGCAACAGGAGTTTATAAATGTAATTTGTGCTCAAAAACCTTTGAAACTAAGAAGAAGGCACAGTATCATGAAAGACATGTTCACGTAAACAAGGGGCTGAAGAGTAAGTGTGGGTACTGTAATGAGAAATTTATCAGTCATATTAGAAGGGATGAGCACTTGGTGGAAATGCATGGAGTCAAGTTGAAGGTTGTCAAATGTCAGGCGTGCGACAGGACGTTTCCTAACACAAACGCACTAAGTGTACACACGAGACGAGACCACTTGATGGAGAGACGGTTCAAATGTACACAATGCGATAAGGCATTTTTCAAAGCCGCCGACTTAAACTTTCACATGGTAACGCATACAAAAACGAGAGAGTTTCAATGTACTGTGTGCCTGAAGTCATATAGCCGGAAGGAAACTTTAAGGCAGCATATGGAAATACACAGTGACATAAGACGGTTTAAATGCAAGCATTGTGGTCGGGCATTCGTACAGAAAGCCAGCTGGAAGGGGCACATGAGGAGTAAGCACGGCGAACTGGTCTGA
- Protein Sequence
- MAGTRGKPIEDPEWDPKTNSEDKPKRKQVKKRDISKVTKARLEIMEEIKKHHTNLKEILTCSNATPFVGINYRGYLCSYCDSQYPDPATLKKHTRDNHKGLYESVIPSVNKNTIDEFCIRLDITDLRCTLCDADIDTLENLLKHLEGDHKRDIHSEIKNQLFPFKFNSETMKCCLCSSVFEKFRSLLEHMRIHYRNFICDKCDMGFITKGSLRRHVAEHATGVYKCNLCSKTFETKKKAQRHEKNVHVNKGLKSKCGYCNEKFKNHIRRDEHLVEMHGVKLKIIKCQACDRTFPNTYALRVHTRRDHLMERRFKCTQCDKAFFQAADVKFHMVTHTKTREFQCTVCLKSYSRKETLRQHMEIHSDIRRFKCEHCGQAFVQKASWKGHMKSSRGKRIEDPEWDPKTNNEDKPKRKKDKKRAIPKMTKARRRLEMMEEIKKHHTNLKEILTCSNATPFVGINYRGYLCSYCDSQYPDPATLKKHTRDNHKGLYESVIPSVNKNTIDEFCIRLDITDLRCTLCDADIDTLENLLKHLEGDHKRDIHSEIKNQLFPFKFNSETMKCCLCSSVFEKFRSLLEHMRIHYRNFICDECDMGFITKGSLRRHVAEHATGVYKCNLCSKTFETKKKAQYHERHVHVNKGLKSKCGYCNEKFISHIRRDEHLVEMHGVKLKVVKCQACDRTFPNTNALSVHTRRDHLMERRFKCTQCDKAFFKAADLNFHMVTHTKTREFQCTVCLKSYSRKETLRQHMEIHSDIRRFKCKHCGRAFVQKASWKGHMRSKHGELV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00238011;
- 90% Identity
- -
- 80% Identity
- -