Bman009166.1
Basic Information
- Insect
- Bombyx mandarina
- Gene Symbol
- lrrfip2
- Assembly
- GCA_003987935.1
- Location
- NW:207613-238378[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-79 1.3e-75 253.9 16.2 1 295 107 395 107 400 0.86 2 2 0.24 3e+03 -3.3 7.6 127 166 422 465 408 474 0.45
Sequence Information
- Coding Sequence
- ATGATGGGACGCCGATCTGAGATGGCCACCCCCGATAACAGCGACGAAGAAAGCGGAGACGCTTTCACCGATGGGGACTTCGAGGACTCCGGCGACGAAACCGTTGTCGAAAATAACAAATCTCATATACCTGTTAATGACACTGTCAATGAAGAAGTCAAGAATGGTCAATATGTAGAAGAGAATACTCCAAAAGTTAACGGTCACAATAGTCAGATAACGCCCTTAGAAGGTCCAGTCTTAACAGATGTGCGCCGAGATTCCTACGCAGAACAAACACCTTCGATTGTTGGCATCCTAGGAGATCAACATAATCATGCGGAACAGCGATTAGCGGCGCGACGGGCGGCGCGGGCGGAAGCGCGGGAGATTCGCATGCGAGAGTTGGAGCGACAGCAACGCGAACAAGAGGACCATGCCGATAAAGCTTTCGATATGTATACGGAGTCGGTGGGGAGGCGAACGGGGAGTCGTCTGGCGGCGCTCAGTCCCGCTGGAGTGCACTCACCGAGACGCAGCTCCGAGGACTCCGCTGACGACGGGTTCAACGTCAAAGACCTGAGGCACGAGCTGAAAGAAGTCGAAGAGAAGTTCCGCAAGGCGATGATACTGAACGCCCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTCGAGCTGCTCAAGGACAGGATCGAGGAGCTCGGCGAGGAGTACGCGCAGCTACAGCGCGAACACAAAGAGAAGTGCTCGACGCACGAGCGCTTAAAACGCGAGCACGCGTCCGTGGAGCGCGAGCTGGAGGCGGCGAGGGCGGCTATACGCGCGCGggacgccgccgccgccgacgCGGGCTTCGCGTTCGTGGAGgccgccgcgccccccgccccgccccgcaccgcgcccgcCGACCCGCCCCCCGACCCCGCCGCCCCCGCACCCCTCCTCGCGCTCGTCTCGCACGCCGCGCATCAACTGCTCGATGACGTCGGCGAGGGAACGCTTGATGTCCGGTTACAGAAGCTGGTGAGCTCGAAGCAGGCGCTCGAGTCCGAAGTGCGGAAACTGAAGATCCAGCTGAACGAAGAGCGCGCCGCCAGACAGAACGGGGTCGCCAACCATCACGACCAGGAGTATGAGGACGAATTGGAGACCCTGCGGAAGTCGGTGTCGGAGGCTCGCGGGCGGGCGGCGCGCGCGGAGGCCGAGGCCGCGCTGCAGGCCGGCGGCGCCGCCCGCCTCGCCGCGCAGCTGGCCCGCCTGCGCGCCCGCCAGGACCAGCACGACCAGCTCGAGGACCAGCTCAACCAGGAGCGGAGGAGGCTGCAGCGCGAGACGAGGGAAGCGCTGAACCGCGTCGAGGAGTTGGAAACCGAGAACAGTCACCTCACGAAACGTCTCGACAAATTGAAGAACGCGAAGTCTGCGCTGCTCAAGGACCTGTGA
- Protein Sequence
- MMGRRSEMATPDNSDEESGDAFTDGDFEDSGDETVVENNKSHIPVNDTVNEEVKNGQYVEENTPKVNGHNSQITPLEGPVLTDVRRDSYAEQTPSIVGILGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAFDMYTESVGRRTGSRLAALSPAGVHSPRRSSEDSADDGFNVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELGEEYAQLQREHKEKCSTHERLKREHASVERELEAARAAIRARDAAAADAGFAFVEAAAPPAPPRTAPADPPPDPAAPAPLLALVSHAAHQLLDDVGEGTLDVRLQKLVSSKQALESEVRKLKIQLNEERAARQNGVANHHDQEYEDELETLRKSVSEARGRAARAEAEAALQAGGAARLAAQLARLRARQDQHDQLEDQLNQERRRLQRETREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01490145; iTF_00236645;
- 90% Identity
- -
- 80% Identity
- -