Tvar006025.1
Basic Information
- Insect
- Trilocha varians
- Gene Symbol
- lrrfip2
- Assembly
- GCA_030269945.2
- Location
- AP028262.1:12069655-12083666[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-78 5.8e-74 249.7 16.1 1 297 104 402 104 405 0.89 2 2 0.017 4.9e+02 0.4 3.1 126 166 433 470 409 479 0.46
Sequence Information
- Coding Sequence
- ATGATGGGACGACACTCAGAAATGGCCACTCCCGACAATAGCGACGAAGAGAGCGGAGATGCATTCACTGACGGCGATTTCGGTGATTCCGATGAAGAAACTGTTGTAGAAAACAACAAATCTAATATACCAGTCAATGAAACTGTTAATGAAGAAGTAAAGAATGGTCATTATGACGATAACTCGCCTAAAGTTAATGGACACAATAGTCATCACTCGGAAAATGGGGACTTGCCCGATGTGCGCAGGGATTCCTATGGAGAGCAGACACCCTCTATTGTGGGCATACTTGGAGACCAACACAATCATGCTGAACAGCGGTTAGCAGCGCGACGGGCGGCGCGGGCAGAGGCGCGGGAGATCCGCATGAGAGAGCTGGAACGACAGCAGCGGGAACAAGAGGACCATGCTGACAAAGCATTCGATATGTATACAGAGTCGGTGGGGAGACGCGCCGGGGGTCGGCTCGCGGCGCTCAGTCCCGGCGGAGTGCACTCGCCCAGACGTAGCTCAGAGGACTCCGCTGATGACGGCTTCAACGTTAAGGATCTCAGGcaCGAGTTGAAAGAAGTTGAAGAGAAGTTCCGCAAGGCGATGATATTGAACGCTCAACTTGACAACGACAAGGCGGCGCTCGGCTACCAGCTCGAGCTGCTTAAGGACAGGATAGAGGAGCTCGGGGAGGAATACGCACAGTTACAGCGAGAACACAAAGAGAAATGTTCAGCGCACGAGCGTTTAAAACGCGAGCACGCGTCCGTCGAGCGGGAGCTGGGTGCAGCGCGCGCCGCCATCACGGCGAGGGACTCGGCCGCCGCGGAGGCAGGATATGCGTTCGTGGAAGCCAGCGCAGCCCCGGCTCAGTCTCGGTCGGCGCCCGCTCCGGACACCGCGCCCGCCGCCCCCGCCGCCCCCGCCACCCCCGCCACCCCCGCGCCGCACCTCGCGCTCGTGTCGCACGCCGCGCACCAGCTGCTCGACGACGTGGGAGAGGGGACGCTAGACGTGCGGTTGCAGAAACTGGTGAGCTCTAAACAAGGTCTCGAGTCAGAAGTGCGGAAACTGAAGATACAGCTGAACGAGGAGCGCGCCGCCAGACAGAACGGCGTCGCCAACCATCACGACCAGGAATATGAGAACGAATTGGAGACGCTCCGCAAGGCGGTGTCGGAGGCGAAGGGTCGCGCGGCGCGGGCCGAGGCGGAGGCCGCGCTGCAGGCCGGCGGGGCGGCGCGGCTCACGGCGCAGCTCGCGCGGCTCCGGGCGCGCCTCGACCACCACGACGCGCTCGAGGACCAGCTCAACCAGGAGCGACGGAAGCTGCAGCGGGAGGCTCGAGATGCGTTAAATCGTGTCGAAGAATTAGAAACGGAAAACAGTCATCTAACGAAACGTCTCGATAAACTGAAGAATGCTAAATCGGCGCTACTTAAGGACCTGTGA
- Protein Sequence
- MMGRHSEMATPDNSDEESGDAFTDGDFGDSDEETVVENNKSNIPVNETVNEEVKNGHYDDNSPKVNGHNSHHSENGDLPDVRRDSYGEQTPSIVGILGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAFDMYTESVGRRAGGRLAALSPGGVHSPRRSSEDSADDGFNVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELGEEYAQLQREHKEKCSAHERLKREHASVERELGAARAAITARDSAAAEAGYAFVEASAAPAQSRSAPAPDTAPAAPAAPATPATPAPHLALVSHAAHQLLDDVGEGTLDVRLQKLVSSKQGLESEVRKLKIQLNEERAARQNGVANHHDQEYENELETLRKAVSEAKGRAARAEAEAALQAGGAARLTAQLARLRARLDHHDALEDQLNQERRKLQREARDALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00235874;
- 90% Identity
- -
- 80% Identity
- -