Bmor003317.1
Basic Information
- Insect
- Bombyx mori
- Gene Symbol
- lrrfip2
- Assembly
- GCA_027497135.1
- Location
- CP114958.1:15964314-15988116[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-63 2.5e-59 201.0 13.2 1 187 107 286 107 298 0.94 2 2 1 1.8e+04 -6.1 12.6 207 266 369 424 321 448 0.45
Sequence Information
- Coding Sequence
- ATGATGGGACGCCGATCTGAGATGGCCACCCCCGATAACAGCGACGAAGAAAGCGGAGACGCTTTCACCGACGGGGACTTCGAGGACTCCGGCGACGAAACCGTTGTCGAAAATAACAAATCTCATATACCTGTTAATGACACTATCAATGAAGAAGTCAAGAATGGTCAATATGTAGAAGAGAATACTCCAAAAGTTAACGGCCACAATAGTCAGATGACGCCCTTAGAAGGTCCAGTCTTAACAGATGTGCGCCGAGATTCCTACGCTGAACAAACACCTTCGATTGTTGGCATCCTAGGAGATCAACATAATCATGCGGAACAGCGATTAGCGGCGCGACGGGCGGCGCGGGCGGAAGCGCGGGAGATCCGCATGCGAGAGTTGGAGCGACAGCAACGCGAACAAGAGGACCATGCCGATAAAGCTTTCGATATGTATACGGAGTCGGTGGGGAGGCGAACGGGGAGTCGTCTGGCGGCGCTTAGTCCCGCTGGAGTGCACTCACCGAGACGCAGCTCCGAGGACTCCGCTGATGACGGGTTCAACGTCAAAGACCTCAGGCACGAGCTGAAAGAAGTCGAAGAGAAGTTCCGCAAGGCGATGATACTGAACGCCCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTCGAACTGCTCAAGGACAGAATCGAGGAGCTCGGCGAGGAGTACGCGCAGCTACAGCGCGAACACAAAGAGAAGTGCTCGACGCACGAGCGTTTAAAACGCGAGCACGCGTCCGTGGAGCGCGAGCTGGAGGCGGCGAGGGCGGCTATACGCGCGCGGGACGCCGCCGCCGCCGACGCGGGCTTCGCGTTCGTGGAGGCCGCCGCGCCCCCCGCCCCGCCCCGCGCCGCGCCCGCCGACCCGCCCCCCGACCCCGCCGCCCCGCACCCCTCCTCGCGCTCGTCTCGCACGCCGCGCATCAACTGCTCGATGACGTCGGAGAGGGAACGCTTGATGTCCGAGCGCGCCGCCAGACAGAACGGGGTCGCCAACCATCACGACCAGGAGTATGAGGACGAATTGGAAACCCTGCGGAAGTCTGTGTCGGAGGCTCGCGGGCGGGCGGCGCGCGCGGAGGCCGAGGCCGCGCTGCAGGCCGGCGGCGCCGCCCGCCTCGCCGCGCAGCTGGCCCGCCTGCGCGCCCGCCAGGACCAGCACGACCAGCTCGAGGACCAGCTCAACCAGGAGCGGAGGAGGCTGCAGCGCGAGACGAGGGAAGCGTTGAACCGCGTTGAGGAGTTGGAGACCGAGAACAGTCACCTCACGAAACGTCTCGACAAACTGAAGAACGCGAAGTCTGCGCTGCTCAAGGACCTGTGA
- Protein Sequence
- MMGRRSEMATPDNSDEESGDAFTDGDFEDSGDETVVENNKSHIPVNDTINEEVKNGQYVEENTPKVNGHNSQMTPLEGPVLTDVRRDSYAEQTPSIVGILGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAFDMYTESVGRRTGSRLAALSPAGVHSPRRSSEDSADDGFNVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELGEEYAQLQREHKEKCSTHERLKREHASVERELEAARAAIRARDAAAADAGFAFVEAAAPPAPPRAAPADPPPDPAAPHPSSRSSRTPRINCSMTSERERLMSERAARQNGVANHHDQEYEDELETLRKSVSEARGRAARAEAEAALQAGGAARLAAQLARLRARQDQHDQLEDQLNQERRRLQRETREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00235874;
- 90% Identity
- -
- 80% Identity
- -