Bwal015817.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombus waltoni
Gene Symbol
-
Assembly
GCA_014737395.1
Location
JACXII010000044.1:1140231-1141560[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.00015 0.012 15.9 0.1 2 23 57 79 56 79 0.96
2 9 3.9e-07 3.1e-05 24.0 2.8 1 23 150 172 150 172 0.99
3 9 0.00012 0.0098 16.2 1.7 1 23 200 222 200 222 0.99
4 9 3.6e-05 0.0028 17.9 0.7 2 23 229 251 228 251 0.94
5 9 0.00012 0.0094 16.2 0.0 1 23 257 279 257 279 0.97
6 9 0.00029 0.023 15.0 1.2 1 23 285 307 285 307 0.97
7 9 0.00092 0.073 13.4 9.7 1 23 313 335 313 335 0.97
8 9 7.7e-06 0.00061 20.0 0.0 1 23 341 363 341 363 0.96
9 9 0.0041 0.32 11.4 3.1 5 23 372 390 370 391 0.93

Sequence Information

Coding Sequence
ATGTCTGTGGCAAACAATTTCGTAGTAAGGGCTGTATTAGTCGTCATAAACGTATTCATAATAATCAAAGGTCCTACATTTGTCCTGTGGAAGACCGAGTCTGATCCTGTTATGCAAATATCAACGGCCGAAAGCGATAGTACAAATGTTGAAGAGGTAGAATACATCCAGTGCGCTCAATGTGATATTGTTTTCGTAAATATGAAGTACCTTATAGATCATATGAACAGCGAGCATGAAGCTCAAATGCATTATTGTCAGTATTGTAAGTTAGTGTATCATGGTCAAGATAAGGATTTTGAGGTTCACATATCAATGCATGGTAGAAATTATAATAAGTTAAAAGATGCCACAGAAGATAAAACTTCGGAACGTACAAACGAAGTGAAAAAGAAAGGCAAGAATAATGAAAAATCTTTTGATCAGAACATTGAAAAGCCTCTGTGTTATACTTGCAACTTATGCGAGAGAAATTTCACAAAGAAGTCTGAATTGAAAAAGCACATAAACAGACATTCCGATGTCAACCCGATTCAAAATCCGGATGAGACAGAACTTGTAAATAAAGCAAAACAAATAATTAATGATCGTGTTTCTTACAAATGTGAAACGTGTAAAAAGGTCATATTTACAAAACGAGGATTCCTACGCCATATTCGTGTCCATTCTGATAAACGACCGTGTAAATGTGATTTATGCGGAAAATCCTATCGTATCGAACAAGATCTAGCTAGACATATACGAGACGTTCACGAAGGATTAAAAAAATATGCTTGCGACATTTGTGGTCGCGCGTTTGCGAATAAAGGAGCGAAAGATGATCATCGAAGGATTCATACCGGTGAACGTCCATACGCATGCGAACATTGCCCAAAAATGTTTCGAACTCTGAATTCAATTTACATTCACAATCGTGTACATACGGATTATAAACCTCATAAATGTTCATATTGTGGAAAACATTTTAGAAGCAGGCAGAGGCTAACTCATCATGAAACCACGCATACAGGTATCAAAGCTTTTGCCTGCGAAATCTGTGGTAAAACGTTTTCCGTCAAAGGAGAAGTCGTACGACATCGTGCGATACATAACGAAGAAAAACCTTTCGACTGTAAATGCGGCATGAAATTTGGCCAAAAAAGATATTTGAGAAACCATATAAAACAACATCACAAGGAAGCATCTTCGTGGTTGTTAGCAGAGTTATTGGGAAATAATAATTGA
Protein Sequence
MSVANNFVVRAVLVVINVFIIIKGPTFVLWKTESDPVMQISTAESDSTNVEEVEYIQCAQCDIVFVNMKYLIDHMNSEHEAQMHYCQYCKLVYHGQDKDFEVHISMHGRNYNKLKDATEDKTSERTNEVKKKGKNNEKSFDQNIEKPLCYTCNLCERNFTKKSELKKHINRHSDVNPIQNPDETELVNKAKQIINDRVSYKCETCKKVIFTKRGFLRHIRVHSDKRPCKCDLCGKSYRIEQDLARHIRDVHEGLKKYACDICGRAFANKGAKDDHRRIHTGERPYACEHCPKMFRTLNSIYIHNRVHTDYKPHKCSYCGKHFRSRQRLTHHETTHTGIKAFACEICGKTFSVKGEVVRHRAIHNEEKPFDCKCGMKFGQKRYLRNHIKQHHKEASSWLLAELLGNNN