Bpic006397.1
Basic Information
- Insect
- Bombus picipes
- Gene Symbol
- Prdm2
- Assembly
- GCA_014737485.1
- Location
- JACXIP010000013.1:2782820-2783983[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00014 0.014 16.0 0.1 2 23 37 59 36 59 0.96 2 9 2.6e-05 0.0026 18.3 6.4 1 23 130 152 130 152 0.99 3 9 0.00012 0.012 16.3 1.7 1 23 180 202 180 202 0.99 4 9 3.3e-05 0.0034 18.0 0.7 2 23 209 231 208 231 0.94 5 9 0.00011 0.011 16.3 0.0 1 23 237 259 237 259 0.97 6 9 0.00027 0.027 15.1 1.2 1 23 265 287 265 287 0.97 7 9 0.00087 0.087 13.5 9.7 1 23 293 315 293 315 0.97 8 9 7.2e-06 0.00073 20.1 0.0 1 23 321 343 321 343 0.96 9 9 0.0039 0.39 11.5 3.1 5 23 352 370 350 371 0.93
Sequence Information
- Coding Sequence
- ATGATATCGGAATGTTTATTTTGCAGGTGGAAGACCGAGTCTGATCCTGTTATGCAAATATCGACGGCCGAAAGCGAAAGTACAAACGTTGAAGAGGTAGAATACATCCAGTGCGCTCAATGTGATATTGTTTTCGTAAATATGAAGTACCTTATAGACCATATGAACAGCGAGCATGAAGCTCAAATGCATTATTGTCAGTATTGTAAGCTAGTGTATCATGGTAAAGATAAGGATTTTGAGGTTCACATATCAATGCATGGTAGTAATTATAATAAATTAAAAGATGCCACAGAAGATGAAACTTTGGAATACACAAACGAAGTGAAAAAGAAAGACAAGAATAATGAAAAATCTTTTAATCAGGACATTGAAAAGCCTCCGTGTTACACTTGCAATTTATGCAAGAGAAATTTCACAAAGAAGTGTGAATTAAAAAAGCACATAAACAGACATTCCGATGTCAACCCGATTCAAAATTCGGATGAGACAGAACTTGTAAATAAAGCAAAACAAATAATTAATGATCGTGTCTCTTACAAATGTGAAACATGTAAAAAGGTCATATTTACAAAACGGGGATTCCTACGCCATATTCGTGTCCATTTTGATAAACGACCATGTAAATGTGATTTATGCGGAAAATCCTATCGTATCGAACAAGACCTAGCTAGACATATACGAGACGTTCACGAAGGATTAAAAAAATATGCTTGCGACATTTGTGGTCGCGCATTTGCGAATAAAGGAGCGAAAGATGATCATCGAAGGATTCATACCGGTGAACGTCCATACGCATGCGAACATTGCCCAAAAATGTTTCGAACTCTGAATTCAATTTACATTCACAATCGTGTACATACGGATTATAAACCTCATAAATGTTCATATTGTGGAAAACATTTTAGAAGCAGGCAGAGGCTAACTCATCATGAAACTACACATACAGGTATCAAAGCTTTTGCCTGCGAAATCTGCGGTAAAACTTTTTCCGTCAAAGGAGAAGTTGTACGACATCGTGCGATACATAACGAAGAAAAACCTTTCGACTGTAAATGCGGCATGAAATTTGGCCAGAAAAGATATCTGAGAAACCATATAAAACAACATCACAAGGAAGCATCTTCGTGGTTGTTAGCAGAATTATTAGGAAATAGTAATTGA
- Protein Sequence
- MISECLFCRWKTESDPVMQISTAESESTNVEEVEYIQCAQCDIVFVNMKYLIDHMNSEHEAQMHYCQYCKLVYHGKDKDFEVHISMHGSNYNKLKDATEDETLEYTNEVKKKDKNNEKSFNQDIEKPPCYTCNLCKRNFTKKCELKKHINRHSDVNPIQNSDETELVNKAKQIINDRVSYKCETCKKVIFTKRGFLRHIRVHFDKRPCKCDLCGKSYRIEQDLARHIRDVHEGLKKYACDICGRAFANKGAKDDHRRIHTGERPYACEHCPKMFRTLNSIYIHNRVHTDYKPHKCSYCGKHFRSRQRLTHHETTHTGIKAFACEICGKTFSVKGEVVRHRAIHNEEKPFDCKCGMKFGQKRYLRNHIKQHHKEASSWLLAELLGNSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00233412;
- 90% Identity
- iTF_00221448;
- 80% Identity
- -