Basic Information

Insect: Bombus soroeensis
Gene Symbol: Prdm2
Assembly: GCA_014737365.1
Location: JACXIL010000174.1:905779-906801[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2.2e-05 0.002 18.5 6.4 1 23 83 105 83 105 0.99

2 8 0.00028 0.026 15.0 1.7 1 23 133 155 133 155 0.99

3 8 2.8e-05 0.0026 18.2 0.7 2 23 162 184 161 184 0.94

4 8 9.5e-05 0.0089 16.5 0.0 1 23 190 212 190 212 0.97

5 8 0.00023 0.021 15.3 1.2 1 23 218 240 218 240 0.97

6 8 0.00073 0.069 13.7 9.7 1 23 246 268 246 268 0.97

7 8 6.1e-06 0.00057 20.3 0.0 1 23 274 296 274 296 0.96

8 8 0.0033 0.31 11.7 3.1 5 23 305 323 303 324 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2.2e-05	0.002	18.5	6.4	1	23	83	105	83	105	0.99
2	8	0.00028	0.026	15.0	1.7	1	23	133	155	133	155	0.99
3	8	2.8e-05	0.0026	18.2	0.7	2	23	162	184	161	184	0.94
4	8	9.5e-05	0.0089	16.5	0.0	1	23	190	212	190	212	0.97
5	8	0.00023	0.021	15.3	1.2	1	23	218	240	218	240	0.97
6	8	0.00073	0.069	13.7	9.7	1	23	246	268	246	268	0.97
7	8	6.1e-06	0.00057	20.3	0.0	1	23	274	296	274	296	0.96
8	8	0.0033	0.31	11.7	3.1	5	23	305	323	303	324	0.93

Sequence Information

Coding Sequence: ATGAAGTACCTTATAGATCATATGAACAGCGAGCATGAAGCTCAAATGCATTATTGTCAGTATTGTAAGCTAGTGTATCATGGTAAAGATAAGGATTTTGAGGTTCACATATCAATGCATGGTAGTAATTATAATAAATTAAAAGATGCCACAGAAGATGAAACTTTGGAATACACAAACGAGGTGAAAAAGGAAGATAAGAATAGTGAAAAATCTTCTAATCAGGACATTGAAAAGCCTCCGTGTTACACTTGCAATTTATGCAAGAGAAATTTCACAAAGAAGTGTGAATTAAAGAAACACATAAACAGACATTCCGATGTTAACCCGATTCAAAATTCGGATGAGACAGAACTTGTAAATAAAGCAAAGCAAATAATTAATGATCGTGTCTCTTACAAATGTGAAACGTGTAAAAAGATCATATTTACAAAACGGGGATTCCTACGCCATATTCGTGTCCATTTTGATAAGCGGCCATGTAAATGTGATTTATGCGGAAAATCCTATCGTATCGAACAAGACCTAGCTAGACATATACGAGACGTTCACGAAGGATTAAAAAAATATGCTTGCGACATTTGTGGACGCGCGTTTGCGAATAAAGGTGCGAAAGATGATCATCGAAGGATTCATACCGGTGAACGTCCATACGCATGCGAACATTGCCCAAAAATGTTTCGAACTCTCAATTCAATTTACATTCACAATCGTGTACATACTGATTATAAACCTCATAAATGTTCATATTGTGGAAAACATTTTAGAAGTAGGCAGAGGCTAACTCATCATGAAACTACACATACAGGCATCAAAGCTTTTGCCTGCGAAATCTGCGGTAAAACGTTTTCCGTCAAAGGAGAAGTTGTACGACATCGTGCGATACATAACGAAGAAAAACCTTTCGACTGTAAATGCGGCATGAAATTTGGCCAGAAAAGATATCTGAGAAACCATATAAAACAACATCACAAGGAAGCATCTTCGTGGTTGTTAGCAGAATTATTGGGAAATAATAATTGA
Protein Sequence: MKYLIDHMNSEHEAQMHYCQYCKLVYHGKDKDFEVHISMHGSNYNKLKDATEDETLEYTNEVKKEDKNSEKSSNQDIEKPPCYTCNLCKRNFTKKCELKKHINRHSDVNPIQNSDETELVNKAKQIINDRVSYKCETCKKIIFTKRGFLRHIRVHFDKRPCKCDLCGKSYRIEQDLARHIRDVHEGLKKYACDICGRAFANKGAKDDHRRIHTGERPYACEHCPKMFRTLNSIYIHNRVHTDYKPHKCSYCGKHFRSRQRLTHHETTHTGIKAFACEICGKTFSVKGEVVRHRAIHNEEKPFDCKCGMKFGQKRYLRNHIKQHHKEASSWLLAELLGNNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00233412;
90% Identity: iTF_00221448;
80% Identity: -