Bcos008502.1
Basic Information
- Insect
- Bombus consobrinus
- Gene Symbol
- Prdm2
- Assembly
- GCA_014737455.1
- Location
- JACXIU010000028.1:5080855-5082015[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00033 0.027 14.8 0.0 2 23 37 59 36 59 0.96 2 9 2.6e-05 0.0021 18.3 6.4 1 23 129 151 129 151 0.99 3 9 0.00012 0.0093 16.3 1.7 1 23 179 201 179 201 0.99 4 9 3.3e-05 0.0026 18.0 0.7 2 23 208 230 207 230 0.94 5 9 0.00011 0.0089 16.3 0.0 1 23 236 258 236 258 0.97 6 9 0.00027 0.021 15.1 1.2 1 23 264 286 264 286 0.97 7 9 0.00086 0.069 13.5 9.7 1 23 292 314 292 314 0.97 8 9 1.5e-05 0.0012 19.1 0.0 1 23 320 342 320 342 0.96 9 9 0.0038 0.31 11.5 3.1 5 23 351 369 349 370 0.93
Sequence Information
- Coding Sequence
- ATGATATCGGAATGTTTATTTTGCAGGTGGAAGACCGAATCTGATCCTGTTATGCAAATATCGACGGCCGAAAGCGAAAGTACAAACATTGAAGAGGTAGAATACATCCAGTGCGCTCAATGTGATATTGTTTTCGTAAATATGAAGTACCTTATAGATCATATAAACAGCGAGCATGAAGCTCAAATGCATTATTGTCAGTATTGTAAGCTAGTGTATCATGGTAAAGATAAGGATTTTGAGGTTCACATATCAATGCATGGTAGTAATAATAAATTAAAAGATGCCACAGAAGATGAAACTTTGGAATACACAAACGAGGTGAAAAAGAAAGACAAGGATAATGAAAAATCTTTTAATCAGGACATTGAAGAGCCTCCGTGTTACACTTGTAATTTATGCAAGAGAAATTTCACAAAGAAGTGTGAATTAAAAAAGCACATAAACAGACATTCCGATGTCAACCCGATTCAAAATTCTGATGAGACAGAACTTGTAAATAAAGCAAAACAAATAATTAATGATCGTGTCTCTTACAAATGTGAAACATGTAAAAAGGTCATATTTACAAAACGGGGATTCCTACGCCATATTCGTGTCCATTTTGATAAACGGCCATGTAAATGTGATTTATGCGGAAAATCCTATCGTATCGAACAAGACCTAGCTAGACATATACGAGACGTTCACGAGGGATTAAAAAAATATGCTTGCGACATTTGTGGTCGCGCGTTTGCGAATAAAGGAGCGAAAGACGATCATCGAAGGATTCATACCGGTGAACGTCCATACGCATGCGAACATTGTCCAAAAATGTTTCGAACTCTGAATTCAATTTACATTCACAATCGTGTACATACGGATTATAAACCTCATAAATGTTCATATTGTGGAAAACATTTCAGAAGTAGGCAGAGGTTAACTCATCATGAAACTACACATACAGGTATCAAAGCTTTTGCCTGCGAAATCTGCGGTAAAATGTTTTCCGTCAAAGGAGAAGTTGTACGGCATCGTGCGATACATAACGAAGAAAAACCTTTCGACTGTAAATGCGGCATGAAATTTGGCCAGAAAAGATATCTGAGAAACCATATAAAACAACATCACAAGGAAGCATCTTCGTGGTTGTTGGAAGAATTATTGGGAAATAATAATTGA
- Protein Sequence
- MISECLFCRWKTESDPVMQISTAESESTNIEEVEYIQCAQCDIVFVNMKYLIDHINSEHEAQMHYCQYCKLVYHGKDKDFEVHISMHGSNNKLKDATEDETLEYTNEVKKKDKDNEKSFNQDIEEPPCYTCNLCKRNFTKKCELKKHINRHSDVNPIQNSDETELVNKAKQIINDRVSYKCETCKKVIFTKRGFLRHIRVHFDKRPCKCDLCGKSYRIEQDLARHIRDVHEGLKKYACDICGRAFANKGAKDDHRRIHTGERPYACEHCPKMFRTLNSIYIHNRVHTDYKPHKCSYCGKHFRSRQRLTHHETTHTGIKAFACEICGKMFSVKGEVVRHRAIHNEEKPFDCKCGMKFGQKRYLRNHIKQHHKEASSWLLEELLGNNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00233412;
- 90% Identity
- iTF_00221448;
- 80% Identity
- -