Bhor005357.1
Basic Information
- Insect
- Bombus hortorum
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_905332935.1
- Location
- HG995203.1:3790653-3792893[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.1e-115 2.4e-111 372.1 34.8 1 300 29 327 29 327 0.97 2 3 0.0024 52 3.2 2.9 122 172 327 377 325 382 0.92 3 3 0.051 1.1e+03 -1.1 5.4 195 238 359 401 348 402 0.56
Sequence Information
- Coding Sequence
- ATGGAGTCTGCTATAGCTGGACGTAGGCGGACAACCGCACGACATTCAGCAGAGGATCAGGCTCTCGATCAGATAGCCAAGGAGGCAGAAGCTAGATTAGCTGCTAGAAGACAGGCAAGAGCGGAAGCTAGAGAAATACGAATGCGGGAGTTAGAAAGACAACAGAAAGAGGCAGAGGAAAATGCAGATAGGGTGTACGACATGTGTTCAGCTGATGTGAATAGAACAATGAGAGTAACACCTGATTCTGTGAGGTCGTCGCGTCTCCTCACGAATTCTAACAATTTCCAATCCAGTCGAAGATCTTCCGAAGATTCACTGGAAGATGCTGGCCTAAGCAGAGACCTCAGGTTAGAATTGAAAGAATTTGAAGAAAAATTTAGAAAGGCGATGATAGCCAATGCCCAGTTAGACAATGAAAAATCTTCGTATGCTTATCAAGTCGATCTATTGAAAGACAAATTGGAGGAACTAGAGGAGACGGTTGCACAACTTCGTAGGGAGCTTAGAGAAAAGAATCGTGAGTCTGAACAGTTAAAAAGACTCAGTCAAACATTGAAAGACGAGTTAGATGTATGCCATGCACAATTAATAGAAAGAGATACGCTTATACAAGAAAACGGTTTAGTTATTGTCGACGATGAAGGAAGTGAAAACGAAGATAATGAAATTGAGAACGGTCCACGTCCAAGACGAAGAGTACTAGTCAGTACAGAAGCAGCAGAATTATTGCAAAACGCTGGGAAGGGTTCACTAGATGTCCGGCTGAGAAAATTTGCTTCTGAAAAAAAAGAATTGCAAGATGAGATACGACATCTTAGATTGGAACTAGAGGAGACAAGAAATCGTATTAGGTCCGAAAGATCGCCTGGTTCAGTATTAGGTTGCTTATCAGACTCCGAAGATGTGCAACGTGAAGCAAACAAGCTTTTGGCCGATTACAAATTCAAGCTTCAAAAAGCTGAACAAGATATGTCTACTTTGCAAGCTACTGTAGCCAGGCTAGAAAGTCAAGTAATACGTTATAAGTCAGCAGCAGAGGCATCTGAAAAAGCGGAGGATGAACTGAAAGTAGAAAAGAGAAAGTTACAGAGAGAAGTCAGAGAGACTCAAGGCCGTGTAGAAGAACTGGAAACGGCAAATTCTCATTTACAGAGGCGATTGGATAAACTTAAAAACGCAAAATCCGCTCTGTTGAAGGAGCTTTGA
- Protein Sequence
- MESAIAGRRRTTARHSAEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQKEAEENADRVYDMCSADVNRTMRVTPDSVRSSRLLTNSNNFQSSRRSSEDSLEDAGLSRDLRLELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEETVAQLRRELREKNRESEQLKRLSQTLKDELDVCHAQLIERDTLIQENGLVIVDDEGSENEDNEIENGPRPRRRVLVSTEAAELLQNAGKGSLDVRLRKFASEKKELQDEIRHLRLELEETRNRIRSERSPGSVLGCLSDSEDVQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRETQGRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_00633626;