Bcon001195.1
Basic Information
- Insect
- Bombus confusus
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_014737475.1
- Location
- JACXIV010000047.1:3156473-3160336[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.3e-102 5.2e-98 327.8 28.2 20 300 1 280 1 280 0.97 2 3 0.0028 43 3.0 3.3 122 171 280 329 278 333 0.92 3 3 0.073 1.1e+03 -1.6 6.0 197 238 314 354 302 355 0.55
Sequence Information
- Coding Sequence
- ATGCGGGAGTTAGAAAGACAACAGAAAGAGGCAGAGGAAAATGCAGATAGGGTGTACGACATGTGTTCAGCTGATGTGAATAGAACAATGAGAGTAACACCTGATTCTGTGAGGTCGTCGCGTCTCCTCACGAATTCTAACAATTTCCAATCCAGTCGAAGATCTTCCGAAGATTCACTGGAAGATGCCGGCCTAAGCAGAGACCTCAGGTTAGAATTGAAAGAATTTGAAGAAAAATTTAGAAAAGCGATGATAGCCAATGCTCAGTTAGACAATGAAAAATCTTCGTATGCTTATCAAGTCGATCTATTAAAAGACAAATTGGAGGAACTAGAGGAGACGGTTGCACAACTTCGTAGGGAGCTTAGAGAAAAGAATCGGGAGTCTGAACAGTTAAAAAGGCTCAGTCAAACATTGAAAGACGAGTTAGATGTATGCCATGCACAATTAATAGAAAGAGATACGCTTATACAAGAAAACGGTTTAGTTATTGTCGACGACGAAGGAAGTGAAAACGAAGATAATGAAATTGAGAACGGTCCGCGTCCAAGACGAAGAGTACTAGTCAGTACAGAAGCAGCAGAATTATTGCAAAACGCTGGAAAGGGTTCACTAGATGTCCGGCTGAGAAAATTTGCTTCTGAAAAAAAAGAATTGCAAGATGAGATACGACATCTTAGATTGGAACTAGAGGAGACAAGAAATCGTATTAGGTCCGAAAGATCGCCTGGTTCAGTATTAGGTTGCTTATCAGACTCCGAAGATGTGCAACGTGAAGCAAACAAACTTTTGGCCGATTACAAGTTCAAGCTACAAAAAGCTGAACAAGATATGTCTACTTTGCAAGCTACTGTAGCCAGGCTAGAAAGTCAAGTAATACGTTATAAGTCAGCAGCAGAGGCATCTGAAAAAGCAGAGGATGAATTGAAAGTAGAAAAGAGAAAGTTACAAAGAGAAGTCAGGGAGACTCAAGGCCGTGTAGAAGAACTGGAAACGGCAAATTCTCATTTACAGAGGCGATTGGATAAACTTAAAAACGCAAAATCCGCTCTGTTGAAGGAGCTTTGA
- Protein Sequence
- MRELERQQKEAEENADRVYDMCSADVNRTMRVTPDSVRSSRLLTNSNNFQSSRRSSEDSLEDAGLSRDLRLELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEETVAQLRRELREKNRESEQLKRLSQTLKDELDVCHAQLIERDTLIQENGLVIVDDEGSENEDNEIENGPRPRRRVLVSTEAAELLQNAGKGSLDVRLRKFASEKKELQDEIRHLRLELEETRNRIRSERSPGSVLGCLSDSEDVQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRETQGRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_00633626;
- 80% Identity
- iTF_00220577;