Bcul013358.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bombus cullumanus
Gene Symbol
-
Assembly
GCA_014737535.1
Location
JACXIX010000059.1:709404-713227[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 6.3 5.9e+02 1.3 0.2 1 20 362 381 362 385 0.77
2 10 0.071 6.6 7.4 4.9 1 23 392 414 392 414 0.97
3 10 0.00062 0.058 13.9 4.0 1 20 420 439 420 442 0.96
4 10 1.3e-06 0.00012 22.4 1.7 1 23 448 470 448 470 0.98
5 10 4.1e-05 0.0038 17.6 3.3 1 23 476 498 476 498 0.98
6 10 2.8e-06 0.00026 21.3 0.7 1 23 509 531 509 531 0.98
7 10 1.1e-08 1.1e-06 28.8 0.3 1 23 537 559 537 559 0.99
8 10 6.5e-06 0.00061 20.1 0.6 1 23 565 587 565 587 0.95
9 10 8.6e-06 0.0008 19.8 0.1 1 23 593 615 593 615 0.93
10 10 1.6e-05 0.0015 18.9 0.2 3 23 623 643 621 643 0.98

Sequence Information

Coding Sequence
ATGAATTGGGAAATCAGCTGTGCCGATATGTGTCGAGCGTGCATGAAAGTTGACGGCGTTCTTCTTCCTATGTACGATGACGACACGATTAGTCAAAAAAATTTGCCTAATAAACTTGCAGAACTTGCATCGATACAGATTGACAGGTTCGATGGGTTACCAAATATGCTTTGTGCGAAGTGTGCTTATCGCACAGATGCATTTTATGATTTCAAGTTGCAAGTTCAAGCTACTGAAAGGAAACTCCGCAAAATGTTTGAAACACAAATCCGCTATAACATAAAGGAGGAGGCAATGGGCAATGATTTTGAACAAGACTGTTCAGAACAATCAGACGAATTGTTAGAATTTAAACTATTAGATAACAAAGAAGATATTAGGCCTACCAATGGAACGGACAGTTCAGAAGAATTTTTGTCCGAGCGAGTTACTATAAACGACAAAGGAGAGCAACCGTTAGAGCTCGACGTGTCCGAACTGGTAGAAGAAAATGGCGAATTTAACAAGGCTAGCATATCTGGATTAAAAGGTATTATCATTTCGAAGCTGCCAGGAACAGAGATCGATCAAGACAAACGACTGAAGAACGAGATACCTGATGAAATTTCGAAAATTTTGGAATCCCAGCAGCTAGATTATACCATTATGTATATACCGGAAGATGTTTCTTTAGAGCATGTGAATACCCAGAATACGCTTTCTTGCGATACTGTGATTAAATTAGATGATAGCAAAAAGATTACTGAGGCTGACTGTAATGGGGAGCTCCTACAAGAAACTGTGGACAACGAGGAATTTTTAAATGCCGTGTGCAACGAGAAGATTGTGAAATCAAAGGAGGAAGATAATAAAATCAGCGACAACGAGGTGGCCTGGAAACCTACGATTCCGGAAGAAAAATCAACGGAAAGACTAAACGAGAAAAACACGCAAAAACATTCGCCGGAATCGAATCAACAGCCAGAAGAGAGCGATGACTCTGATTCCGATTATTTTGTCGACCCGAAAGATAATATATTAGGTAGCTTGAATGATACAATAACGAGAATAAAGGAGATAAAACTTGCAGACGATGTGATACAGTATCAGTGCACTCTGTGTTTGCAAAATTACGATAAGCTGACCGGTGTCTTGTTGCATACTATAGACAATCATGTGCCGAGTAGCGGTCCATTCTTTTGCGTGGTATGCGAGAAAGACTGCCAGAGTCATAGGGAATTGCGTACGCATGTTAAAACGCATAGAGGCCAGTTCCCTTATTCCTGTTTCATATGCAACAAAGCTTACACGATGAAGAGGTATTTAAAGAGACATATGGTGTGTCACACGGAGTTTCATAGGCATCGTTGTCCAAAATGTGGCCTCAGATTCAAAGTTAAATCAGAGTTAGAAACTCACATTACGACACACATACGCGGTGCGCCTTACTCCTGTAGTCAATGTCCACGACTGTTCAATCATAAAGGTAACTATAAGCGGCATTTGATTACTCACTTGGATCCGCAAGGTCTTCACTTACCCAAGTACCCCTGTAAAGTTTGTGGAAAAAGATTTCTAAATAATCGCACTTTAGAAACACATATGCGCGTTCACACAGGTGAAAAACCGTTCAAATGCGAGATATGTGGAAGATCGTTCTCTCAACAAGGAAATTTGTTGAATCATGTACGAATCCACTCGAACCCGCGAAGCTACACGTGCGAGGTTTGCGGAAAGCGATTCAACCAAAGGGCCACTCTGAGAGATCATAGTCTTCTACATACTGGAGAAAAACCATATGTTTGTAATGTTTGCGGAATAGCGTTTACTTTTAGCGCCGCGTTGAGACGCCACATGTGGACTCATACTGGTGGAAAACCATTCGGATGTGAAATTTGTAGTGCTCGTTTCGTGGGCAAATATGATTTACGACGACATATGAGGATACACACGGATAGACCGAGAATGAAACGAAGAAAAAACGTGATCAAATCGAACAATGAACAGGAAGCAATTAAAGAAGAAGATGTTACAGTTTCGGAACATCCTGATACAGAGACCGTTTTAATAGAACAAGTTTTGTTAACACAAAACGTTACACAGGTCGTACAACAAGAGTCCGAGAAGGAAAATGTCGATGCTCTTTTTAATCTTATACAATATGGTCAATAG
Protein Sequence
MNWEISCADMCRACMKVDGVLLPMYDDDTISQKNLPNKLAELASIQIDRFDGLPNMLCAKCAYRTDAFYDFKLQVQATERKLRKMFETQIRYNIKEEAMGNDFEQDCSEQSDELLEFKLLDNKEDIRPTNGTDSSEEFLSERVTINDKGEQPLELDVSELVEENGEFNKASISGLKGIIISKLPGTEIDQDKRLKNEIPDEISKILESQQLDYTIMYIPEDVSLEHVNTQNTLSCDTVIKLDDSKKITEADCNGELLQETVDNEEFLNAVCNEKIVKSKEEDNKISDNEVAWKPTIPEEKSTERLNEKNTQKHSPESNQQPEESDDSDSDYFVDPKDNILGSLNDTITRIKEIKLADDVIQYQCTLCLQNYDKLTGVLLHTIDNHVPSSGPFFCVVCEKDCQSHRELRTHVKTHRGQFPYSCFICNKAYTMKRYLKRHMVCHTEFHRHRCPKCGLRFKVKSELETHITTHIRGAPYSCSQCPRLFNHKGNYKRHLITHLDPQGLHLPKYPCKVCGKRFLNNRTLETHMRVHTGEKPFKCEICGRSFSQQGNLLNHVRIHSNPRSYTCEVCGKRFNQRATLRDHSLLHTGEKPYVCNVCGIAFTFSAALRRHMWTHTGGKPFGCEICSARFVGKYDLRRHMRIHTDRPRMKRRKNVIKSNNEQEAIKEEDVTVSEHPDTETVLIEQVLLTQNVTQVVQQESEKENVDALFNLIQYGQ