Bign017198.1
Basic Information
- Insect
- Bombus ignitus
- Gene Symbol
- -
- Assembly
- GCA_014825875.1
- Location
- CM026156.1:1827038-1832500[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.7 7e+02 1.3 0.2 1 20 370 389 370 393 0.77 2 10 0.027 2.9 8.8 3.8 1 23 400 422 400 422 0.97 3 10 0.00066 0.069 13.9 4.0 1 20 428 447 428 450 0.96 4 10 1.4e-06 0.00014 22.3 1.7 1 23 456 478 456 478 0.98 5 10 4.3e-05 0.0046 17.6 3.3 1 23 484 506 484 506 0.98 6 10 3e-06 0.00032 21.3 0.7 1 23 517 539 517 539 0.98 7 10 1.2e-08 1.3e-06 28.8 0.3 1 23 545 567 545 567 0.99 8 10 6.9e-06 0.00073 20.1 0.6 1 23 573 595 573 595 0.95 9 10 9.1e-06 0.00096 19.8 0.1 1 23 601 623 601 623 0.93 10 10 1.7e-05 0.0018 18.9 0.2 3 23 631 651 629 651 0.98
Sequence Information
- Coding Sequence
- ATGTCGAAGGTAACGATGAATTGGGAAATTAGCTGTGCCGACATGTGTCGAGCGTGCATGAAAGTTGACGGCGTTCTTCTTCCTATGTACGATGACGACACGATTAGTCAAAAAAATTTGCCTAATAAACTTGCAGAGCTTGCATCAATACAGATTGACAGGTTTGATGGGCTACCAAATATGCTTTGTGCAAAGTGTGCTTATCGCACAGATGCATTTTATGATTTCAAATTGCAAGTTCAAGCTACTGAAAGGAAACTCCGCAAAATGTTTGAAACACAAATCCGCTATAACATAAAGGAGGAGGCAATGGGCAATGATTTTGAACAAGACTGTTCAGAACAACCAGACGAATTGTTAGAAATGAAACTATTAGATAGCAAAGAAGATATTAAGCCTATCAGTGATATGGATATTTCAGAAGAATTTTTGTCCGACCGAATTACTATAAACGACAAAGAGGAGCAAGCGTTAGAGCTCGACGTGTCCGAACTGGTAGAAGAAAATGGCGAATTTAACAAGGCTAACATATCTGGATTAAAAGGTATTATCATTTCGAAGCTATCAGGAGCAGAGATCGATCAAGACAAACAAGTGAAGAACGAGATACCTGATGAAATTTCGAAAATTTTGGAATCCCAACAGCTAGATTATACCATAATGTATATACCGGAAGATGTTTCTTTAGAGCATGTAGAGCACGTGAATACCCAGAATACGCTTTCTTGCGATACTGTGATTAAATTAGATGATAGCAAAAAGATTACCGAGGCTGACTGTAATGGGGAGCTCCTACACGAAACTGTGGACAACGAAGGATTTTTAAATGCCGTGTGCAACGAGAAGATTGTGGAATCAAGGGAGGAAGATAATAAAATCATCGACAACGAGGTGGCCTGGAAACCTACGATTCCGGGAGAAAAATCGATGGAAAGACTAAACGAGAAAAACACACAAAAACATTTGCCGGAATCGAATCAACAGCCAGAAAAGAGCGATGACTCTGACTCTGATTATTATGTCCACCCGAAAGATAATATATTAGGTAGCTTGAATGATACAATAACGAGAATAAAAGAGATAAAACTCGAAGACGATGTAATACAATATCAGTGCACTCTGTGTTTGCAAAATTACGATAAGCTGACCGGTGTCTTGTTGCATACTATAGACAATCATGTACCGAGTAGCGGTCCATTCTTTTGCGTGGTATGCGAGAAAGACTGCCAAAGTCATAGAGAATTGCGTGCGCATGTTAAAACGCATAGAGGCCAGTTCCCTTATTCCTGTTTCATATGCAACAAAGCTTACACGATGAAGAGGTATTTAAAGAGACATATGGTGTGTCACACGGAGTTTCATAGGCATCGTTGTCCGAAATGTGGCCTCAGATTCAAAGTTAAATCAGAATTAGAAACTCACATTACGACACACATACGCGGTGCGCCTTACTCCTGTAGTCAATGTCCACGACTGTTCAATCATAAAGGTAACTATAAGCGGCATTTGATTACTCACTTGGATCCGCAAGGTCTTCACTTACCCAAGTATCCCTGTAAAGTTTGTGGAAAAAGATTTCTAAATAATCGCACTTTAGAGACACATATGCGCGTTCACACAGGTGAAAAACCGTTCAAATGCGAGATATGTGGACGATCATTCTCTCAACAAGGAAATTTGTTGAATCATGTAAGAATCCACTCAAACCCGCGAAGCTACACGTGCGAGGTTTGCGGAAAGCGATTCAACCAAAGGGCCACTTTGAGAGATCATAGTCTTCTACACACTGGAGAAAAACCATATGTTTGTAATGTTTGCGGAATAGCGTTTACTTTTAGCGCCGCGTTGAGACGCCACATGTGGACTCATACTGGTGGAAAACCATTCGGATGTGAAATTTGTAGTGCTCGTTTCGTGGGCAAATATGATTTACGACGACATATGAGGATACACACGGATAGACCGAGAACGAAACGAAGAAAAAACGTGATCAAATCGAACAATGAACAGGAAGCAGCAGTTAAAGAAGAAAATGTTACAGTTTCGGAACATCCTGATACAGAGACCGTTTTAATAGAACAAGTTTTGTTAACGCAAAACGTTACACAAGTTGTACAACAAGAGTCTGAGAAGGAAAATGTCGATGCTCTTTTTAATCTTATACAATATGGTTAA
- Protein Sequence
- MSKVTMNWEISCADMCRACMKVDGVLLPMYDDDTISQKNLPNKLAELASIQIDRFDGLPNMLCAKCAYRTDAFYDFKLQVQATERKLRKMFETQIRYNIKEEAMGNDFEQDCSEQPDELLEMKLLDSKEDIKPISDMDISEEFLSDRITINDKEEQALELDVSELVEENGEFNKANISGLKGIIISKLSGAEIDQDKQVKNEIPDEISKILESQQLDYTIMYIPEDVSLEHVEHVNTQNTLSCDTVIKLDDSKKITEADCNGELLHETVDNEGFLNAVCNEKIVESREEDNKIIDNEVAWKPTIPGEKSMERLNEKNTQKHLPESNQQPEKSDDSDSDYYVHPKDNILGSLNDTITRIKEIKLEDDVIQYQCTLCLQNYDKLTGVLLHTIDNHVPSSGPFFCVVCEKDCQSHRELRAHVKTHRGQFPYSCFICNKAYTMKRYLKRHMVCHTEFHRHRCPKCGLRFKVKSELETHITTHIRGAPYSCSQCPRLFNHKGNYKRHLITHLDPQGLHLPKYPCKVCGKRFLNNRTLETHMRVHTGEKPFKCEICGRSFSQQGNLLNHVRIHSNPRSYTCEVCGKRFNQRATLRDHSLLHTGEKPYVCNVCGIAFTFSAALRRHMWTHTGGKPFGCEICSARFVGKYDLRRHMRIHTDRPRTKRRKNVIKSNNEQEAAVKEENVTVSEHPDTETVLIEQVLLTQNVTQVVQQESEKENVDALFNLIQYG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00118167;
- 90% Identity
- iTF_00217898;
- 80% Identity
- -