Basic Information

Insect: Bombus impatiens
Gene Symbol: -
Assembly: GCA_000188095.4
Location: NT:730993-736525[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 5.1 3.2e+02 1.3 0.2 1 20 367 386 367 390 0.77

2 10 0.021 1.3 8.8 3.8 1 23 397 419 397 419 0.97

3 10 0.0005 0.031 13.9 4.0 1 20 425 444 425 447 0.96

4 10 1e-06 6.5e-05 22.4 1.7 1 23 453 475 453 475 0.98

5 10 3.3e-05 0.0021 17.6 3.3 1 23 481 503 481 503 0.98

6 10 2.3e-06 0.00014 21.3 0.7 1 23 514 536 514 536 0.98

7 10 9.3e-09 5.8e-07 28.8 0.3 1 23 542 564 542 564 0.99

8 10 5.3e-06 0.00033 20.1 0.6 1 23 570 592 570 592 0.95

9 10 7e-06 0.00043 19.8 0.1 1 23 598 620 598 620 0.93

10 10 1.3e-05 0.0008 18.9 0.2 3 23 628 648 626 648 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	5.1	3.2e+02	1.3	0.2	1	20	367	386	367	390	0.77
2	10	0.021	1.3	8.8	3.8	1	23	397	419	397	419	0.97
3	10	0.0005	0.031	13.9	4.0	1	20	425	444	425	447	0.96
4	10	1e-06	6.5e-05	22.4	1.7	1	23	453	475	453	475	0.98
5	10	3.3e-05	0.0021	17.6	3.3	1	23	481	503	481	503	0.98
6	10	2.3e-06	0.00014	21.3	0.7	1	23	514	536	514	536	0.98
7	10	9.3e-09	5.8e-07	28.8	0.3	1	23	542	564	542	564	0.99
8	10	5.3e-06	0.00033	20.1	0.6	1	23	570	592	570	592	0.95
9	10	7e-06	0.00043	19.8	0.1	1	23	598	620	598	620	0.93
10	10	1.3e-05	0.0008	18.9	0.2	3	23	628	648	626	648	0.98

Sequence Information

Coding Sequence: ATGAATTGGGAAATTAGCTGTGCCGACATGTGTCGAGCGTGCATGAAAGTTGACGGCGTTCTTCTTCCTATGTACGATGATGACACGATTAGTCAAAAAAATTTGCCTAATAAACTTGCAGAGCTTGCATCGATAGAGattgaCAGGTTCGATGGGTTACCAAATATGCTTTGCGCAAAGTGTGCTTATCGCACAGATGCATTTTATGATTTCAAGTTGCAAGTTCAAGCTACTGAAAGGAAACTCCGCAAAATGTTTGAAACACAAATTCGCTATAACATAAAGGAGGAGGCAATGGGCAATGATTTTGAACAAGACTGTTCAGAACAATCAGACgaattgttagaaattaaacTATTAGATAACAAAGAAGATATTAAGCCTACCATTGATGTGGATAGTTCGGAAGAATTTTTGTCCGAGCGAATTACTATAAACGACAAAGGAGAGCAAGCGTTAGAGCAAGCGTTCGACGTGTCCGAACTGGTAGAAGAAAATGGCGAATTTAACAAGGCTAGCATATCTGGATTAAAAGGTATTATCATTTCGAAGCTGTCAGGAGCAGAGATCGATCAAGACAAACGGCTGAAGAACGAGATACCtgatgaaatttcgaaaattttggAATCCCAGCAGCTAGATTATACCATAATGTATATACCGGAAGATGTTTCTTTAGAGCACGTAGAGCATGTGAATACGCAGAATACGCTTTCTTGCGATACTGTGATTAAATTAGAAGATAGCAAAAAGATTACCGAGGCTGACTGTAATGGGGAGCTCCTACACGAAACTGTGgataacgaagaatttttagatGCCGTGTGCAACGAGAAGATTGTGGAATCAAGGGGggaagataataaaatcagCAACGCTGAGGTGGCTTGGAAACCTACCATTccggaagaaaaatcgatggaaagactaaacgagaaaaacatacaaaaaCATTCTCCGGAATCGAATCAACAGCCAGAAGAGAGCGACGACTCTGACTCTGATTATTTTGTCGACCcgaaagataatatattagGTAGCTTGAATGATACAATAACGAGAATAAAGGAGATAAAACTCGAAGACGATGTGATACAGTATCAGTGCACTCTATGTTTGCAAAATTACGATAAGCTGACTGGTGTCTTGTTGCATACTATAGACAATCATGTGCCGAGTAGCGGTCCATTCTTTTGCGTGGTATGCGAGAAAGACTGCCAGAGTCATAGAGAATTGCGTGCGCATGTTAAAACGCATAGAGGCCAGTTCCCTTATTCCTGTTTCATATGCAACAAAGCTTACACGATGAAGAGGTATTTAAAGAGACATATGGTGTGTCATACGGAATTTCATAGGCATCGTTGCCCAAAATGTGGCCTCAGATTCAAGGTTAAATCAGAGTTAGAAACTCACATTACGACACACATACGCGGTGCGCCTTACTCCTGTAGTCAATGTCCACGACTCTTCAATCATAAAGGTAATTATAAGCGGCACTTGATTACACACTTGGATCCGCAAGGTCTTCACTTACCCAAGTACCCTTGTAAAGTTTGTGGAAAAAGATTTCTAAATAATCGCACTTTAGAGACACATATGCGCGTTCACACAGGTGAAAAACCGTTCAAATGCGAGATATGTGGACGATCGTTCTCTCAACAAGGAAATTTGTTGAATCATGTAAGAATCCACTCAAACCCGCGAAGCTACACGTGCGAGGTTTGCGGAAAGCGATTCAACCAAAGGGCCACTCTGAGAGATCATAGTCTTCTACACACTGGGGAAAAACCATATGTTTGTAATGTTTGCGGAATAGCGTTTACTTTTAGTGCCGCGTTGAGACGCCACATGTGGACTCATACTGGTGGAAAACCATTCGGATGTGAAATTTGTAGTGCTCGTTTCGTGGGCAAATATGATTTACGACGACATATGAGGATACACACGGATAGACcgagaacgaaacgaagaaaaaacgtGATCAAATCGAACAATGAACAGGAAGGAGCaattaaagaagaagatgTTACAGTTTCGGAACATCCTGATACAGAGACCGTTTTAATAGAGCAAGTTTTGTTAACGCAAAACGTTACGCAGGTTGTGCAACAAGAGTCTGAGAAGGAAAATGTCGATGCTCTTTTTAATCTTATACAATATGGTTAA
Protein Sequence: MNWEISCADMCRACMKVDGVLLPMYDDDTISQKNLPNKLAELASIEIDRFDGLPNMLCAKCAYRTDAFYDFKLQVQATERKLRKMFETQIRYNIKEEAMGNDFEQDCSEQSDELLEIKLLDNKEDIKPTIDVDSSEEFLSERITINDKGEQALEQAFDVSELVEENGEFNKASISGLKGIIISKLSGAEIDQDKRLKNEIPDEISKILESQQLDYTIMYIPEDVSLEHVEHVNTQNTLSCDTVIKLEDSKKITEADCNGELLHETVDNEEFLDAVCNEKIVESRGEDNKISNAEVAWKPTIPEEKSMERLNEKNIQKHSPESNQQPEESDDSDSDYFVDPKDNILGSLNDTITRIKEIKLEDDVIQYQCTLCLQNYDKLTGVLLHTIDNHVPSSGPFFCVVCEKDCQSHRELRAHVKTHRGQFPYSCFICNKAYTMKRYLKRHMVCHTEFHRHRCPKCGLRFKVKSELETHITTHIRGAPYSCSQCPRLFNHKGNYKRHLITHLDPQGLHLPKYPCKVCGKRFLNNRTLETHMRVHTGEKPFKCEICGRSFSQQGNLLNHVRIHSNPRSYTCEVCGKRFNQRATLRDHSLLHTGEKPYVCNVCGIAFTFSAALRRHMWTHTGGKPFGCEICSARFVGKYDLRRHMRIHTDRPRTKRRKNVIKSNNEQEGAIKEEDVTVSEHPDTETVLIEQVLLTQNVTQVVQQESEKENVDALFNLIQYG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00118167;
90% Identity: iTF_00217898;
80% Identity: -