Bcam008746.1
Basic Information
- Insect
- Bombus campestris
- Gene Symbol
- -
- Assembly
- GCA_905333015.1
- Location
- HG995127.1:16443809-16449185[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.027 2.1 8.9 0.2 2 20 109 127 108 129 0.92 2 13 0.0047 0.37 11.2 0.8 1 22 135 156 135 156 0.95 3 13 0.0036 0.28 11.6 7.1 1 23 166 189 166 189 0.93 4 13 2e-06 0.00016 21.8 3.9 1 23 524 547 524 547 0.97 5 13 1.5 1.2e+02 3.4 0.3 5 23 554 573 553 573 0.94 6 13 0.00064 0.051 14.0 1.2 2 23 580 601 580 601 0.96 7 13 0.2 16 6.1 2.7 1 20 628 647 628 649 0.90 8 13 0.00016 0.013 15.8 1.4 1 22 746 767 746 767 0.96 9 13 3.7e-05 0.003 17.8 1.0 2 23 775 797 775 797 0.95 10 13 0.0057 0.45 11.0 3.5 3 23 809 830 808 830 0.96 11 13 9.3 7.4e+02 0.9 0.2 3 19 851 867 850 869 0.81 12 13 6.2 4.9e+02 1.4 2.5 1 23 877 900 877 900 0.90 13 13 0.0014 0.11 12.9 4.9 1 23 911 934 911 934 0.94
Sequence Information
- Coding Sequence
- ATGGCTCGAGTGTTAGTTTACGCACGTCCTGTTGATGCAATCTTCATGGATATAAAATTGGACAGAAAAATAGATcCTTCTGAATATGCAATAAGAATAAAGGAAGAGCCAATCGATCCAGAGATATGCGATGATTTGTCGCCAGTTGATACGAATACagagaatgaaaatgaaacgacgaCGTTTAAAGGTGAATCTTCGGATGGCGTTTATCGTAGAAATGGAGAATCCGCGTTTCCTCAAGAAAGTACATATTTAGAGAATAACAAATCGGATCCTGATAAACGAAAAAGTAAACATAAAGTACCTTCGGACAACAGAATAAGTTGCAATGTTTGTTTGTTAACttttaaaactaaaaatttattggaactgcataataaattatatagctGTAATGTGTTCAAGTGTAATAATTGCACTGCGATCTTTAGTATGCATATTTCGTTGATACGTCATTTAAAGAGGCGATGTTGTACGAAACAATCGCCTGGATATAGATGTAATTTTTGTAACCGAAGGTTTTCCGATAAAAAACATGTCCAATCTCATTTATTCCATTTACATGGGAACGCATTATTTTCTGGTGAAAgcaaaattacgaaaacatCTGCTGAATCGTTAGGAAAGTCGAATCATTCGGATGGCATAGTCATGACAGAATCAAATACTTCACGCAGTCCCTCCCCAAAAAGCGTAAATAGctcaataaatatatctttgaaACTATCTAATAGTCCAAACAATACAAGCACCAAGGGTTCGAGCAACAAGATCAAGTCAACGCATCCGAAATGGTTAAGCGACTCGTATGGTACACCTTCGAAAAGGATGAAGCAGACCGTCCTTACAGACTTCATATCGTTGTACAAAGACAAACCGAATGACAAATGGGTTAACCCGGGAAAAGTTATCGATACGGAGAATATTCCTGTTACTGCTAGGAAAAGACCATTTGTTCAAATTCATGTGAATTCCAAAACAATGATATCTTTATTAAGGAACGGAATAGAAGCTGAATCTGAAAGCTCTAATACCTCGCACAATATGTCTTACAACCTTAGGCCGGTAAAAAgatgttcttcttctttatatgatttttacgatttattGGAGTTTGAGACCTTTGAAAGATCAAGACaatcttttaaaagaaacaagtCCCCCTATATGTTTGGCCAAAGTGAAAGATCTGCGCTTGAAGCTAAGTGTAAAGAATGTGTGGTCCGTTTGGAGAAATGCGACGAATTCTTGGAGCCTACTAGTTTTATATCAAACGgagacgaagacgaagacgaagacggaaacgaaaatgaaaatgaaaatgaaaatgaaaacgaaaatgaaaatgaaaacgaaaatgaaaatgaaaatgtaaaggaAAACGAAGACGCTTTCAAACAAGCAATATCGGAAAATGTGAAAGAGGAACTTGAAGGTTTTCGTGAGACAAGCTCAAAGTCAAAGCGATTCAATGAATTTGTAAAATCTTTCGTTGATAGATTAATCGTACCTCAACAAGAATCGGTCGAGTTTAAGAAGAACTTTAAGGTCAATcagcagaaaatatttcaatgtcatatttgtaaaaaatcgTTTTCTTTGAAAGTGAACTTGCGCGAGCACATGAAATTGTTCCATGCGATTTACATGTCGAGCATATGCAACGCGCGTTACACGTCCATGAATAAGTTACTAACACACTATTTACGTCAGCATATTGTGTTTAAACGAAGGGAATGTTGCGTGTGTTATGAGAAGTTTGACACGTCGGCATTGTTGAAGCGGCACATGATTTTGCATTGTTTGAAGACCATAAGATCAAAAAAGGACGTTCTACCGGTTGATgttgaaataaattgcaaCGCATTCAAGAAACAATACAAATGCAAAGGTTGTCGCAAACGATTTTGGCTATACTCGTGTTTGAAACAACATGAGAATGTATGTCGTCGAATGAAAGTTTTAATACATAAGCAACGTGTACCTCGTGTAAACCGTTTGTCTCGGTCCTTGAAAGAACCGAGTGACATGGAACAGTCACCTGATTTGGAAGAAATGTTGGATGTTCCGGGTGGGACGACAAAAcctttggaaaataatttggCTCCGAGTACGCTTATTACGGATGATACATTCTCTTCGTCATTCGACACAGCTGCAAAGAACAAAAGGCTACTTAATGGGATTGCATGCGTAAAGGGTTACCAAGCGGACAAGATGGACACAACAAAGTTTCCGTGCACTATTTGTGGGACACAATTCCGaacatttcaaaatttgtGCATACACGAGCGCACCTATTGCCAAACAGCCACCGAAAAGTGTAACGTTTGTAACACGATGTTTTCCACTAAAAGATTATTACAGCTTCACATGCTTGCTACTCATACGCCTTCGTGCTCGGTGAACTACAAATCCTTTTGTAAATTCTGTAATCAAGGATTTGTTAAGAAATCGTATCTTCAAATTCACGAACGACACTTCCATATTGAGCAGAATCTTAGACTGGCGCTGAATTCCGATAACGTTTCCAAGGATCAACCAATCTGTAATATATGCCATTTGTTATTCGAATCCTACGAACGTTTTGTCGAGCATAACATGTATTATAACAAAGATAAAGATTTTTTATGCGCAATATGTGGTAAGTTGGTTAAAGGAATGTACAAGTTTCATCATCACAACAAAGTGGAGCATTATCCGGACCAACTATGGAAATTGTACCCTTACAAGTGCGATACTTGTAACGAAGGCTTCAGCTACGAATCACATCTCCACGCACATAAGCTACACGTTCATTCGCACGATTCACCCGCTGACGAGGCGCGCGACCGCGATACATCGGATCAAACTTTTCCCACGTGTTCGTGa
- Protein Sequence
- MARVLVYARPVDAIFMDIKLDRKIDPSEYAIRIKEEPIDPEICDDLSPVDTNTENENETTTFKGESSDGVYRRNGESAFPQESTYLENNKSDPDKRKSKHKVPSDNRISCNVCLLTFKTKNLLELHNKLYSCNVFKCNNCTAIFSMHISLIRHLKRRCCTKQSPGYRCNFCNRRFSDKKHVQSHLFHLHGNALFSGESKITKTSAESLGKSNHSDGIVMTESNTSRSPSPKSVNSSINISLKLSNSPNNTSTKGSSNKIKSTHPKWLSDSYGTPSKRMKQTVLTDFISLYKDKPNDKWVNPGKVIDTENIPVTARKRPFVQIHVNSKTMISLLRNGIEAESESSNTSHNMSYNLRPVKRCSSSLYDFYDLLEFETFERSRQSFKRNKSPYMFGQSERSALEAKCKECVVRLEKCDEFLEPTSFISNGDEDEDEDGNENENENENENENENENENENENVKENEDAFKQAISENVKEELEGFRETSSKSKRFNEFVKSFVDRLIVPQQESVEFKKNFKVNQQKIFQCHICKKSFSLKVNLREHMKLFHAIYMSSICNARYTSMNKLLTHYLRQHIVFKRRECCVCYEKFDTSALLKRHMILHCLKTIRSKKDVLPVDVEINCNAFKKQYKCKGCRKRFWLYSCLKQHENVCRRMKVLIHKQRVPRVNRLSRSLKEPSDMEQSPDLEEMLDVPGGTTKPLENNLAPSTLITDDTFSSSFDTAAKNKRLLNGIACVKGYQADKMDTTKFPCTICGTQFRTFQNLCIHERTYCQTATEKCNVCNTMFSTKRLLQLHMLATHTPSCSVNYKSFCKFCNQGFVKKSYLQIHERHFHIEQNLRLALNSDNVSKDQPICNICHLLFESYERFVEHNMYYNKDKDFLCAICGKLVKGMYKFHHHNKVEHYPDQLWKLYPYKCDTCNEGFSYESHLHAHKLHVHSHDSPADEARDRDTSDQTFPTCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00231563; iTF_00228220; iTF_00220047; iTF_00214618; iTF_00221511; iTF_00225489; iTF_00230929; iTF_00232215; iTF_00232823; iTF_00222137;
- 90% Identity
- iTF_00231563; iTF_00228220;
- 80% Identity
- -