Bter006238.1
Basic Information
- Insect
- Bombus terrestris
- Gene Symbol
- -
- Assembly
- GCA_000214255.1
- Location
- NC:18034740-18041507[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.099 6.1 6.7 0.4 2 19 109 126 108 129 0.92 2 13 0.0015 0.092 12.4 0.7 1 21 135 155 135 156 0.95 3 13 0.014 0.83 9.4 7.9 1 23 166 189 166 189 0.93 4 13 9.6e-06 0.00059 19.3 2.4 1 23 546 569 546 569 0.96 5 13 1.2 72 3.3 0.3 5 23 576 595 575 595 0.94 6 13 0.0022 0.13 11.9 4.3 2 23 602 623 602 623 0.96 7 13 5.9 3.6e+02 1.1 8.0 1 23 650 673 650 673 0.95 8 13 0.00049 0.03 13.9 2.0 1 22 773 794 773 794 0.96 9 13 2.9e-05 0.0018 17.8 1.0 2 23 802 824 802 824 0.95 10 13 0.05 3 7.6 4.5 1 23 834 857 834 857 0.95 11 13 7.2 4.4e+02 0.8 0.2 3 19 878 894 877 896 0.81 12 13 0.22 13 5.6 3.6 1 23 904 927 904 927 0.88 13 13 0.0062 0.38 10.5 5.8 1 23 938 961 938 961 0.94
Sequence Information
- Coding Sequence
- ATGGCTCGAGTGTTAGTTTACGCACGTCCTGTTGATGCAATCTTCATGGATATAAAATTGGGCAACAAAATAGACcATTCTGAATATGCAATAAGAATAAAGGAAGAGCCAATCGATCCAGAGATCTGTGATGATTTATCGCCAGTTGATACGAATACGGAGAATGAAAATGAGACAGCGATGTTTGAAGGTGAATTTTCGGATGGCGTTTATTGTAGAAATCGAGAATCTGCGTTTCCTCAAGAAAGtacatatttagaaaataacaaatccGATGCTGATAAACGAAAAAGTAAACATAAAGTACCTTCAAACAACAGAATAAGCTGCAATGTTTGTTTGTTAACTTTTCAAACTAAACATTTATTGGAActgcataataaattatatagctGTAATGTATTCAAGTGTAACAATTGTACTGCAATCTTCAGTATGCATACTTCGTTGATACGTCATTTAAATATGCGATGCTGTACGAAACAATGGCCTGGATATagatgtaatttttgtaaccgAAGGTTTTCCTATAAAAGACATGTCCAAtctcatttatttcatatgcATGGGAACGCAATATTTTCTGGCGAaaggaaaattacgaaaacatCTCCTGAATCGTTAGGAAAGTCGAATCATTCGGATGGTATAGTCACGGCAGAATCAAATACTTCACACAGTCCCTCCCTAAAAAACGTAAATAGCTCGATAAATATGTCTTTGAAACTATCTAATAGTTCAAACAATACACCCACCAAGGGTTCGAGCAGCAAGATCAGGTCTACGCATCCGAAATGGTTAAACGATTCGTATGGTACACCTTCGAAAAGGATGAAACAGAACGTCCTTACAGACTTCATATCGCTGTACAAAGACAAGCCGAATGACAAATTGGTTAGTCCGGAAAAAGTTATCGATACGGAGAACATTCCTGTTACTGCGACTATTATACCAACTTCAACGCTCGAGACATTTAGTAACAAGACATCAACGGCTTCAGAAGTTATCCAGATGTCTACTTCTGTTAAGCGAATCGAATCTCCTGTTAGGAAAAGACCATTTGTTCAAATTCATGTGAATTCCGAAACAATGATATCTTTATTaaggaacgaaataaaagctGAATCTGAAAGCTCTAATACCTCGCACAATATGTCTTACAACCTTAGGCCAGTAAAAAgatgttcttcttctttatatgatttttatgatttattggAGTTTGAGACCTTTGAAAGATCAAGACAATCTTTTAGAAGAAACAAGTCCCCCTATACGTTTAATCAAAGTGAAAGATCTGCACCTGAAGCTAAGTGTAAAGAATGTGTGGTCCGTTTGGAGAAATGCGACAAATTCTTGGAGCCTACTAGTTTTGTGTCAAACGGAgacgaaaacgaaaacgaaaacgaaaatgaaaacgaagaCGGTTTCAAACAAGCAGTATCGAAAAATGTGGAAGAGGAATTTGAAGGTTTTCGTGAGACAAGCTCGGCAGGTAACTTGCCTTTGGAAGCTGGCACGATTGAATCAAAGCGATTcaatgaatttgtaaaatctttCGCTGATAGATTAATCGTACCTAAACAAGAATCGGTTGAGTTTAAGAAGAACTTTAAGGTCAATcagcagaaaatatttcaatgtcatatttgtaaaaaaatcTTTTCTTTGAAAGAGAACCTGCGCGAGCACGTGAAATTGTCCCATACGATTTACATGTCGAGCATATGCAACGCGCGTTACACGTCCATGAATAAGTTACTAACTCACTATCTACGTCAGCATATTGTGTTTAAACGAAGGGAATGTTGCGTGTGTTATGAGAAGTTTCACACATCGTCATTGTTGAAGCGGCACATGATTTTGCATTGTTTGAAGACCATAAGATCAAAAAAGGACGTTCTACCGATTgatgttgaaataaattgcaacGCATTCAAGAAACAACACAAATGCCAAGGTTGTCGCAAACGATTTTGGCTATACTCATGTTTGAAACAACATGAGAATGTATGCCATCGAATGAAAGTATTAATACATAAACAACGTGCACCTCGTGTAAACCATTTGTCTCGGTCCTTGAAAGAACCAAGTAAACCAATGGAACTCGGCATAGTACAATCACCTGATTTGGAACAAATGTTGGATGTTCCGGGTGGGATGACAGGAcctttggaaaattatttggCTCCGAGTACGCTTATTACGGATGATACTTTCTTTTCGTCGTTCGATACAGCTGCAAAGAACAAAAGGCTACTTAATGGGATAGCGTGCGTAAAGGGTTACCAAGCGGACAACATGAACAGAACAAGGTTTCCTTGCACTACTTGTGGGACACAATTCCgaacatttcaaaatttgtgCATACACGAGCGCACCTATTGCCAAACAGCCACCGAAAAGTGTAACGTTTGTAACACGATGTTTTCCACTAAAAGGTTATTACAGCTTCACATGCTTGCTACCCATGCGCCTTCGTGCTTGATGAACTACAAATTCTTTTGTAAGTTTTGTAATCAAGGATTTGTTAAGAAATCGAAAGTTCAAATTCACGAACGACACTTCCATATTGGGCAGAATCCTGTACTGGTGCTGAATTCCGATTGCGTTTTGAAAGATAAAccaatttgtaatatatgcCATTTGTTATTCGAATCCTACGAACGTTTTGTCGAGCATAACATGTATTATTACAAGGGCAAAGATTTTTTATGCGCAATATGTGGTAAGTCGTTTCAAGGAATGTACAAGTTTCATCATCACAACAAGTTGGAGCATTATCCGGACGAACTATGGAAATTGTACCCTTACAAATGCGATACTTGTAACGAAGGCTTCAGCTACGAATCACATTTCCACGCACATAAGCTACACGTTCATTCGCACGATTCGCCCGCTGACAAAGCGCGCGACCGCGATACATCGGATCACACTTTTCGTATGTGTTCATGA
- Protein Sequence
- MARVLVYARPVDAIFMDIKLGNKIDHSEYAIRIKEEPIDPEICDDLSPVDTNTENENETAMFEGEFSDGVYCRNRESAFPQESTYLENNKSDADKRKSKHKVPSNNRISCNVCLLTFQTKHLLELHNKLYSCNVFKCNNCTAIFSMHTSLIRHLNMRCCTKQWPGYRCNFCNRRFSYKRHVQSHLFHMHGNAIFSGERKITKTSPESLGKSNHSDGIVTAESNTSHSPSLKNVNSSINMSLKLSNSSNNTPTKGSSSKIRSTHPKWLNDSYGTPSKRMKQNVLTDFISLYKDKPNDKLVSPEKVIDTENIPVTATIIPTSTLETFSNKTSTASEVIQMSTSVKRIESPVRKRPFVQIHVNSETMISLLRNEIKAESESSNTSHNMSYNLRPVKRCSSSLYDFYDLLEFETFERSRQSFRRNKSPYTFNQSERSAPEAKCKECVVRLEKCDKFLEPTSFVSNGDENENENENENEDGFKQAVSKNVEEEFEGFRETSSAGNLPLEAGTIESKRFNEFVKSFADRLIVPKQESVEFKKNFKVNQQKIFQCHICKKIFSLKENLREHVKLSHTIYMSSICNARYTSMNKLLTHYLRQHIVFKRRECCVCYEKFHTSSLLKRHMILHCLKTIRSKKDVLPIDVEINCNAFKKQHKCQGCRKRFWLYSCLKQHENVCHRMKVLIHKQRAPRVNHLSRSLKEPSKPMELGIVQSPDLEQMLDVPGGMTGPLENYLAPSTLITDDTFFSSFDTAAKNKRLLNGIACVKGYQADNMNRTRFPCTTCGTQFRTFQNLCIHERTYCQTATEKCNVCNTMFSTKRLLQLHMLATHAPSCLMNYKFFCKFCNQGFVKKSKVQIHERHFHIGQNPVLVLNSDCVLKDKPICNICHLLFESYERFVEHNMYYYKGKDFLCAICGKSFQGMYKFHHHNKLEHYPDELWKLYPYKCDTCNEGFSYESHFHAHKLHVHSHDSPADKARDRDTSDHTFRMCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00215949;
- 90% Identity
- iTF_00221511;
- 80% Identity
- -