Basic Information

Insect: Bombus picipes
Gene Symbol: -
Assembly: GCA_014737485.1
Location: JACXIP010000030.1:4172423-4178576[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.13 13 6.7 0.4 2 19 109 126 108 129 0.92

2 13 0.0013 0.13 13.0 0.4 1 22 135 156 135 156 0.97

3 13 0.018 1.8 9.4 7.9 1 23 166 189 166 189 0.93

4 13 4.5e-06 0.00046 20.7 3.0 1 23 551 574 551 574 0.96

5 13 1.5 1.5e+02 3.3 0.3 5 23 581 600 580 600 0.94

6 13 0.00065 0.065 13.9 1.2 2 23 607 628 607 628 0.96

7 13 1.3 1.3e+02 3.5 3.3 1 20 655 674 655 676 0.89

8 13 0.00064 0.064 13.9 2.0 1 22 777 798 777 798 0.96

9 13 3.6e-05 0.0036 17.9 1.2 2 23 806 828 805 828 0.94

10 13 0.065 6.5 7.6 4.5 1 23 838 861 838 861 0.95

11 13 7.2 7.3e+02 1.2 0.4 3 19 882 898 880 900 0.84

12 13 0.28 28 5.6 3.6 1 23 908 931 908 931 0.88

13 13 0.0081 0.81 10.5 5.8 1 23 942 965 942 965 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.13	13	6.7	0.4	2	19	109	126	108	129	0.92
2	13	0.0013	0.13	13.0	0.4	1	22	135	156	135	156	0.97
3	13	0.018	1.8	9.4	7.9	1	23	166	189	166	189	0.93
4	13	4.5e-06	0.00046	20.7	3.0	1	23	551	574	551	574	0.96
5	13	1.5	1.5e+02	3.3	0.3	5	23	581	600	580	600	0.94
6	13	0.00065	0.065	13.9	1.2	2	23	607	628	607	628	0.96
7	13	1.3	1.3e+02	3.5	3.3	1	20	655	674	655	676	0.89
8	13	0.00064	0.064	13.9	2.0	1	22	777	798	777	798	0.96
9	13	3.6e-05	0.0036	17.9	1.2	2	23	806	828	805	828	0.94
10	13	0.065	6.5	7.6	4.5	1	23	838	861	838	861	0.95
11	13	7.2	7.3e+02	1.2	0.4	3	19	882	898	880	900	0.84
12	13	0.28	28	5.6	3.6	1	23	908	931	908	931	0.88
13	13	0.0081	0.81	10.5	5.8	1	23	942	965	942	965	0.94

Sequence Information

Coding Sequence: ATGGCTCGAGTGTTAGTTTACGCACGCCCTGTTGATGCGGTCTTCATGGATATAAGATTGGGCAACAAAATAGATCCTTCTGAATATGCAATAAGAATAAAGGAAGAGCCAATCGATCCAGAGATCTGCGATGATTTATCGCCAGTTGATACGAATACAGAGAATGAAAATGAGACAGCGATGTGTGAAGGTGAATCTTCGGATGGCGTTTATCGTAGAAACCGAGAATCCGCGTTTTCTCAAGAGAGTACATACTTAGAAAATAACAAATCGGATCCTGATAAACGAAAAAGTAAACATAAAGTACCTTCAAACAACGGAATAAGTTGCAACGTTTGTTTGTTAACTTTTCAAACTAAACATTTATTGGAACTGCACAATAAATTATATAGCTGTAATGTATTCAAGTGTAATAATTGCACTGCGATCTTCAGTATGCGTATTTCGTTGATACGTCATTTAAAGACGCGATGTTGTACGAAACAATGGCCTGGATATAGATGTAATTTTTGTAACCGAAGGTTTTCCTATAAAAGACATGTCCAATCTCATTTATTCCATATGCATGGGAACGCAATATTTCCTGGTGAAAGGAAAATTACGGAAACATCTCCTGAATCGTTAGGAAAGTCGAATCATTCGGATGATGAAGTCATGGCAGAATCAAATACTTCACACAGTTCCTCCCCAAAAAGCGTAAATAGCTCGATAAATATATCTTCGAAACTATCTAATAGTTCAAACAATACACCCACCAAGGGTTCGGGCGGCAAGATCAAGTCTACGCATCCGAAATGGTTAAACGATTCGTATGGTACACCTTCGAAAAGGATGAAACAGACCGTCCTTACAGACTTCATATCGCTGTACAAAGACAAACCGAATGACAAATGGGTTAGCCCGGAAGAAGTTATCGACACGGAGAATATTCCTGTTACTGCGACTATTATACCAACTTCAACGCTCGAGACATTTAGTAACAAAACATCAACGGCTTCAGAAGTTATCCAGATGTCTACCTCTGTTAAGCGAATCGAATCTCCTGTTAGGAAAAGACCATTTGTTCAAATTCATGTGAATTCTAAAACAATGATATCTTTATTAAGGAACGAAATAGATGCTGAATCTGAAGGCTCTAACATCTCGCACAATACGTCTTACAACCTTAGGCCAGTAAAAAGATATTCTTCTTCTTCTTCTTTATATGATTTTTACGATTTATTGGAGTTTGAGACCCTTGGAAAATCAAGACAATCTTTTAAAAGAAACAAGTGCCGCTATCCGTTTAACCAAAGTGAAAGATCTGCAGCTGAAGCTAAGTGTAAAGAATGTGTGGTCCGTTTGGAGAAATGCGACAAATTCTTGGAGCCTGCTAGTTTTGTGTCGAACGGAGATAAAGACGAAAAGGAAAAGGAAAAGGAAAAGGAAAACGGAGACGGTTTCGAACAAGCAGTATCGAAAAATGTGAAAGGGAAATTGGAAGGTTTTCATGAGACGAGCTCGGCAGGTAACTTGCCTTTGGAAGCTGGTGGCACGATTGCGTCAAAGCGATTCAATGAATTTGTAAAATCTTTCGTTGATAGATTAATCGTACCTGAACAAGAATCGGTTGAGTTTAAGAAGAACTCTAAGGTCAATCAGCAGAAAATATTTCAATGTCATATTTGTAAAAAATCGTTTTCTTTGAAAGAGAACCTGCGCGAGCACGTGAAATTGTCCCACGCGATTTACATGTCGAGTATATGCAACGCGCGTTACACGTCCATGAATAAGTTACTAACTCACTATCTACGTCAGCATATTGTGTTTAAGCGAAGGGAATGTTGCGTGTGTTATGAGAAGTTTGACACGTCGGCATTGTTGAAGCGGCACATGATATTGCATTGTTTGAAGACCATAAGATCAAAAAAGGACGTTCTACCGGTTGATGTTGAAATAAATTGCAACGCATTCAAGAAACAACACAAATGCCAAGGTTGTCGCAAACGATTTTGGCTATACTCATGTTTGAAACAGCATGAGAATGTATGCCGTGGAATGAAAGTCTCAATACATAAACAACGTGCACGTCGTGTAAACCATCTGTCTCGGTCCTTGAAAGAACCAAGTGACATGGAACTGGGCATAGTACAGTCGCCTGATTTGGAACAAATGTTGGATGTTCCGGATGGGATGACAAGACCTTTGGAAAATTATTTGGCTCCGAGTACGCTTATTACGGATGATACTTTCTCTTCGTCATTCGATACAGCTGCAAAGAACAAAAGGCTACTTAATGGGATAGCATGCGTGAAGGGTTACCAAGCGGACAATATGAACGGAACGAAGTTTCCTTGCACTACTTGTGGGACACAATTCCGAACATTTCAAAATTTGTGCATACACGAGCGCACCTATTGCCAAACAGCCACCAAAAAGTGTAACGTTTGTAACACGATGTTTTCCACTAAAAGATTATTACAGCTTCACATGCTTGCTACCCATACGCCTTCGTGCTCGGTGAACTACAAATTCTTTTGTAAGTTCTGTAATCAAGGATTTGTTAAGAAATCGAAAGTTCAAATTCACGAACGACATTTCCATATTGGGCAGAATCCTAAACTGGTGCTGAATTCCGATTGCATTTTGAAAGATAAAACGATCTGTAATATATGCCATTTGTTATTCGAATCCCACGAACGTTTTGTCGAGCATAACATGTATTATTACAAGGGCAAAGATTTTTTATGCGCAATATGTGGTAAGTCGTTTCAAGGAATGTACAAGTTTCATCATCACAACAAGTTGGAGCATTATCCGGACGAACTATGGGAATCGTACCCTTACAAATGCGATACTTGTAACGAAGGCTTCAGCTACGAATCACATTTCCACGCACATAAGCTACACGTTCATTCGCACGATTCACCCGCTGACGAAGCGCGCGACCGCGATACATCGGATCAGATACATCGCATGTGTTCATGA
Protein Sequence: MARVLVYARPVDAVFMDIRLGNKIDPSEYAIRIKEEPIDPEICDDLSPVDTNTENENETAMCEGESSDGVYRRNRESAFSQESTYLENNKSDPDKRKSKHKVPSNNGISCNVCLLTFQTKHLLELHNKLYSCNVFKCNNCTAIFSMRISLIRHLKTRCCTKQWPGYRCNFCNRRFSYKRHVQSHLFHMHGNAIFPGERKITETSPESLGKSNHSDDEVMAESNTSHSSSPKSVNSSINISSKLSNSSNNTPTKGSGGKIKSTHPKWLNDSYGTPSKRMKQTVLTDFISLYKDKPNDKWVSPEEVIDTENIPVTATIIPTSTLETFSNKTSTASEVIQMSTSVKRIESPVRKRPFVQIHVNSKTMISLLRNEIDAESEGSNISHNTSYNLRPVKRYSSSSSLYDFYDLLEFETLGKSRQSFKRNKCRYPFNQSERSAAEAKCKECVVRLEKCDKFLEPASFVSNGDKDEKEKEKEKENGDGFEQAVSKNVKGKLEGFHETSSAGNLPLEAGGTIASKRFNEFVKSFVDRLIVPEQESVEFKKNSKVNQQKIFQCHICKKSFSLKENLREHVKLSHAIYMSSICNARYTSMNKLLTHYLRQHIVFKRRECCVCYEKFDTSALLKRHMILHCLKTIRSKKDVLPVDVEINCNAFKKQHKCQGCRKRFWLYSCLKQHENVCRGMKVSIHKQRARRVNHLSRSLKEPSDMELGIVQSPDLEQMLDVPDGMTRPLENYLAPSTLITDDTFSSSFDTAAKNKRLLNGIACVKGYQADNMNGTKFPCTTCGTQFRTFQNLCIHERTYCQTATKKCNVCNTMFSTKRLLQLHMLATHTPSCSVNYKFFCKFCNQGFVKKSKVQIHERHFHIGQNPKLVLNSDCILKDKTICNICHLLFESHERFVEHNMYYYKGKDFLCAICGKSFQGMYKFHHHNKLEHYPDELWESYPYKCDTCNEGFSYESHFHAHKLHVHSHDSPADEARDRDTSDQIHRMCS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00215949;
90% Identity: iTF_00222137;
80% Identity: -