Bstr012617.1
Basic Information
- Insect
- Biston stratarius
- Gene Symbol
- -
- Assembly
- GCA_950106695.1
- Location
- OX467112.1:18757072-18767030[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.011 0.81 10.7 0.9 3 23 209 230 208 230 0.90 2 24 1.9 1.4e+02 3.7 1.5 3 23 588 610 587 610 0.84 3 24 0.029 2.1 9.4 0.3 1 21 615 635 615 636 0.96 4 24 5 3.6e+02 2.4 0.2 1 23 677 700 677 700 0.89 5 24 0.00021 0.016 16.1 1.6 3 22 711 730 711 730 0.96 6 24 0.2 15 6.8 0.2 3 23 739 760 737 760 0.95 7 24 0.15 11 7.2 0.6 3 23 781 802 779 802 0.95 8 24 0.0011 0.081 13.9 1.4 1 23 808 831 808 831 0.95 9 24 0.1 7.3 7.7 0.0 1 23 857 880 857 880 0.90 10 24 0.0044 0.32 12.0 3.5 1 23 885 907 885 907 0.97 11 24 0.0061 0.44 11.6 0.2 1 23 913 936 913 936 0.95 12 24 0.0011 0.078 13.9 1.4 1 23 944 966 944 966 0.98 13 24 0.00014 0.01 16.7 1.8 1 23 1015 1038 1015 1038 0.97 14 24 0.0021 0.15 13.0 1.5 1 23 1095 1118 1095 1118 0.96 15 24 0.00088 0.064 14.2 2.1 2 23 1145 1167 1144 1167 0.95 16 24 0.23 17 6.6 0.1 3 23 1174 1195 1173 1195 0.94 17 24 0.0079 0.58 11.2 0.2 1 21 1239 1259 1239 1260 0.95 18 24 0.00099 0.072 14.0 0.6 1 23 1270 1292 1270 1292 0.93 19 24 9e-05 0.0065 17.3 0.3 2 23 1386 1408 1386 1408 0.93 20 24 6.1e-07 4.5e-05 24.1 1.3 3 23 1415 1435 1414 1435 0.98 21 24 0.0003 0.022 15.7 0.7 1 23 1452 1474 1452 1475 0.95 22 24 0.17 12 7.0 0.0 1 23 1496 1518 1496 1518 0.98 23 24 0.022 1.6 9.8 0.6 1 23 1524 1547 1524 1547 0.95 24 24 0.0002 0.015 16.2 0.4 1 23 1555 1578 1555 1578 0.96
Sequence Information
- Coding Sequence
- ATGAATGTAAACTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACACGGAACCTCCCGTCCTCGTCACGAAAATCAAGGATTGCGTGTCGGTCCAGaTAAACGAAAATGACGAACTGCCGACAAATGTCTGCAGGAAATGCATGGACAATGTGAATAACTGGTATATATTTAAGACTGTTTGTGaaaagacacaaaacaaattacagtcTCTGACTAAAAAGGATGGCAGCCTACTAGAAGAGGTGAAAATAAAGAGTGAGCCACTTTATGATGAGGCATATGATGATGGAGTGGTCATTGATGGTTCCTATCCAGTCATTGAGAATGTGGCCTCAACAAGCAAGCTCCAGCCTGAAGGCCCACCGATTCTGGCTTCGCTGGGACTCACACCAAGGAGTGATAAGGGGGTGGAGAGCGAGAATTACGAAGAGGACGACTATGAGGAAGAGATAAATGAGTCTGAAGTACCGCAACCTGTAAAGGTGCCGAATATGCCAGAAGTATCCATCACAGTAATGCGCAATACTGGAGAAACACTCCACGCAAGACAAGGAATACAACAACTCGCTTCCAAGGACTGTCTTATTTGCGGACGCACTTACAGGTACTCTCACAATGCTCGCAGACATGAGCTTGCGTCTCACAGCTTTGATCGTTACACCaataaagtaacaaataaaaagtcgCATCATTCCCGTATGATGCCCAAACTTCGACCCAACCCCTTCAATCCAAAATCACGTCTGATGCCCAACCCAATCAGCCACAAACTGCAATTCATGCCCAAAAATATTCCCGCCAAAATAATACCACAAAAAATAAACCCCCCACCGAAGCCGATACCAATCAAAACACATAAGACAGCGCAAAATAATCTACCATATCCTTTACGCATAAAAGCGCTCAAAGACTtgcagataaagaaaaaagaaccgCAAATCTTGAAAACTTTGCTCACCGCGAAACCTGAGGTTTTAGTGTCGGAACCGGAAATAATGAATTCTGGCCCGGAAAGTCCAGAAACGCTAATATCCGAGCCAGAAATCGCGTCTTTCCAAGTGGAAGCTATTCTGTCAGAGCCTAATGAATACGATCAGAATCAAGAAGAGGACGGTGAAATGGACCATGATAATCAGACTCAAAATTATGATACTGTTGATATGGAGTCCGATCACGAGATTGAGATCGCTCGTCAGCAAGAAAATGGGCCTGAAGAATCggaaaaaaatgaatttattgaGAATAGCGACGAGAACATGCATCACGAGGAGGATCAAGATTTACATATCGAGGAGAATGAAAAACATGAGGAGAGTGAAGGAGATCAAGATACTGGTGATAGCCAGGGAAATATGGAGATAGATGAAAGCTGTAATCACGCGAACATCAATGACTTGGCTAAGGGAGATAGAACCGGGAACGATGAAGGTGAGCATGATGAAGTCGAGCCTGATGAAGTAAATCCGGAAGCCGATGAAAATGATTGTGATGATGATATGCCACCGCCCCCCGTAGTAGAATTAAATGAGGAAATACAACATTCGTCCAGCGAAATGAACGAGGATGATGAAGAACTCGATGAAACGGCTGATCTTAACGAAACCGGCGAACACAAACAGTCAGACCTTGACCCAGACAAGACATATGTCACTAAAGTCCAAAAGGATTTCATCGATAAATATCGCGATATCATCCAACAGATTAATACGAAACGCTGCCTTTGCTGCGATAAGACGTACCCACGTAGGAAGGCAGTTGTTCAACATTTGCAAAAAAATGGACACAAGGTCCCCAAACATACGTGCTACAACTGCGTGATAACGTTCACACATATTGGTGCGCTGCTAAGCCACATGAGAGCGAACGCTTGTACGGATCTATGGAAAATCGTATTTGACAAAAATGGTATTCCAGATGATATGGTCATCAAATACGAGCCTCAGGTAAAGATTCAACCTAAGGACATTTTCAACGCTCGTTCGTACGCGTGTAGGCTTTGCCCTGCCAAGTTCCAACTGAAACAATCCATTATGAAGCATGTGCTGGATGTGCATGAAGACGGTCAGTCGAATATCCCGCTCGGGTGTGTTCACTGCCGTACGAGCTTCAAAGACAAATCTCTGCTCAAGAAACATATTCGCGTCGGCGAATGCACCGTTTACATAAACTGCGATTTATGTTCGGAACAATTTTCGAATATGCAAGACTTTAGCGACCACGCCTTGACTGTTCATGCGGACCATTTCGAGAAGTCCGACAATCAGAACAAATGTATCGACGGTCGCGCCACTGATTGTTCCCTCTGTGGAAAGAAGAACAGCAACTATCTAAATCTTGTGAAACATTTAAAGTTAGTTCACAACGAAGATAAACCTCATTACTGTCAGAATTGTGATGCTAAATTCGAGCACGCTGCTGACTTGAATAAACACATTTATGTAGAACATTCTGACCAAGCGTTAGGGTTAACGCCTCAGGAACCGGACATGTCTCTTGTGAAAGAGGAAGCCGAAGAATACCATTATTCATGCACAGAATGTAATGCGATATTCGAAACTGTAGACGCTTGGACGGACCACCAAGTGGCCGAACACAATCAAGTCGCCCATCATTGCGACCAATGCGACAAAAAGTTTTTGCGACCGTCAGAATTGGCGGAGCATAAAAATACCCACCTGCGAGTCAAGTTCTACTCCTGTAGTGTATGTCCAAATTCGTATAGTACTCCTCAAAAGTTGTCTGACCACGTCCAACAAGCTCACCCAATAGGGGGCGACACTGAATTCTACTGCGACGTTTGCATACGATCGTTCAAAAGTCGTCAGGCCTTCTCGAATCACATGCGTATCCATGCTAAAGTACCAACTACTAACAGGAAGCCTGGTGAACAAAAAGGATTCGATCCACGAATTATCGGTAAACCAGTCAAACAGTTTACAATGGTCCAACCCGGCTTCGTCAACTTCAAGCCAAATGCTAACGTCCCTAATGCACCTTACTCGTGTGACATATGCGGTAAGGGCTTCATGCATAAGAAAAACATATGGAAACACAAAAAAGTGTTGCACGCCGATATTATTAATGATAGAAATGATAGTGAGGAGAATACCATGCATGCTTCCACGGAAGATGACGATTATAACCCTGAAGAAAACGGAGCTCTTTCCACCCCTCAATTCAATAGCTTTAACTTTACCAATTTCAATAACAGTACACCTCAGCAAGATGCCATGCCGTTTTCTTGCGACTTATGTTCTAAGCGATTCCCACTTAGAACCAGTCTGTGGAAGCACAAACGTGCTAAGCACGGCATCGTAAACCCAGGGGCCGGCGCTGGAAACGATACACCCGCACCAACGAAAACATCTGGGGAATCCAGTCGGTCTAGCTGCACAATTTGCAAAATAACATTTTCAGACAAGAAATCATACTATCGCCACAGGAAGAACGTTCACAAAACGGCTACGGAAATGTGCAAACTTTGCGGTAAACCGCTGAACTCAACATTAGAACTATATGAGCATCTGAAAGCTGCACATGCGCGGGAGTTGCTCGGATATAACGCTAATCAAGGCTCAAGTAAAACACAAGAAGTGGCTCAAGATCAAGATGTTGATTATGAAAACGAACAGGAATCTGCAGATCCGAGCATGGACTATCAGGCTCGGTACCCGTGCGATACATGTGGAAAACAGTTTGTTGGGTTGCTGGCGTTGCAAAACCATCAATGCATAAATCAACTCCCACAGCAACCGCAGACGTTCGACTGTGAAATCTGTCACAAGAGTTACACGTCTATCGCTGCGTTGAAGAGTCATCGCGGTTGGCATTTACGTTCACCGGATGGTAAAGCGGCTGCCAATAACAGCGGGCTTTGGATGCCGCAGCACAAAGTGACTAGTAAGGTCAGCAAACACGAGGTCGTAGATGCGGTGCAGTTGGCGCGCGTTTCGCACTCGACCTCTACACATTCAGCACCGGCTGCCGCCGTCACGGCTAAGAGGCGACTACCACCAGAAGTGGAAGTCACGGTTGTAAATCCTAACAAAAAATTACGCTCCGACGACTCTGTCGAATTGGATCATCAGAACGAAGCGGCAGACGGGCGATATTGTACCATCTGCGACAAAGAGTTCACGAAACGCGCCGCATACCAGCGCCATATGGACGAAGTCCATCAACCGAATTCCGTTTTTTGTCCGGTTTGCGATAGAAGTTTTACCAGGAAGTCTACGCTTCTCGTACATATGAAAAAGCATTATGAGACCGGTGAAGGCACTTCTACAACGCAGATGGAGGATGAAGGTCATAGCTGTGACGTTTGCGGCGCTGTGTTTGAGAGCGAGAAGGGATTGAAGGCTCATCAGGCGAGGCATCACGCGGAGGATTCTGGAGAATCGGAGGACGATGGTAGTGCCCCAGCAGCGTTACCGGGAGAGTTCACTTGTGGCCAATGTGGCGACGGAGTTGCCAGTCCGCGTGATTTGCTAGCCCATCGTTCAATGCACGCCACTCCAACCAAGTTTTTCTGTAACATTTGCAAGGTTTACTTTGCCCGGGCTTTGGATCTCTCCTCTCACACTCGCGCGAGACACGCGGATAATGACAAAGTCTTTTTCCCCTGTGCGATGTGCGACCGCTTCTATATGAACAAGAAGAGTTTACAGCGGCACATCGAGATGGCGCATTGA
- Protein Sequence
- MNVNYDRVCRLCLSSRGELLPIFPTTSSDDTEPPVLVTKIKDCVSVQINENDELPTNVCRKCMDNVNNWYIFKTVCEKTQNKLQSLTKKDGSLLEEVKIKSEPLYDEAYDDGVVIDGSYPVIENVASTSKLQPEGPPILASLGLTPRSDKGVESENYEEDDYEEEINESEVPQPVKVPNMPEVSITVMRNTGETLHARQGIQQLASKDCLICGRTYRYSHNARRHELASHSFDRYTNKVTNKKSHHSRMMPKLRPNPFNPKSRLMPNPISHKLQFMPKNIPAKIIPQKINPPPKPIPIKTHKTAQNNLPYPLRIKALKDLQIKKKEPQILKTLLTAKPEVLVSEPEIMNSGPESPETLISEPEIASFQVEAILSEPNEYDQNQEEDGEMDHDNQTQNYDTVDMESDHEIEIARQQENGPEESEKNEFIENSDENMHHEEDQDLHIEENEKHEESEGDQDTGDSQGNMEIDESCNHANINDLAKGDRTGNDEGEHDEVEPDEVNPEADENDCDDDMPPPPVVELNEEIQHSSSEMNEDDEELDETADLNETGEHKQSDLDPDKTYVTKVQKDFIDKYRDIIQQINTKRCLCCDKTYPRRKAVVQHLQKNGHKVPKHTCYNCVITFTHIGALLSHMRANACTDLWKIVFDKNGIPDDMVIKYEPQVKIQPKDIFNARSYACRLCPAKFQLKQSIMKHVLDVHEDGQSNIPLGCVHCRTSFKDKSLLKKHIRVGECTVYINCDLCSEQFSNMQDFSDHALTVHADHFEKSDNQNKCIDGRATDCSLCGKKNSNYLNLVKHLKLVHNEDKPHYCQNCDAKFEHAADLNKHIYVEHSDQALGLTPQEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYSCSVCPNSYSTPQKLSDHVQQAHPIGGDTEFYCDVCIRSFKSRQAFSNHMRIHAKVPTTNRKPGEQKGFDPRIIGKPVKQFTMVQPGFVNFKPNANVPNAPYSCDICGKGFMHKKNIWKHKKVLHADIINDRNDSEENTMHASTEDDDYNPEENGALSTPQFNSFNFTNFNNSTPQQDAMPFSCDLCSKRFPLRTSLWKHKRAKHGIVNPGAGAGNDTPAPTKTSGESSRSSCTICKITFSDKKSYYRHRKNVHKTATEMCKLCGKPLNSTLELYEHLKAAHARELLGYNANQGSSKTQEVAQDQDVDYENEQESADPSMDYQARYPCDTCGKQFVGLLALQNHQCINQLPQQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDAVQLARVSHSTSTHSAPAAAVTAKRRLPPEVEVTVVNPNKKLRSDDSVELDHQNEAADGRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDRSFTRKSTLLVHMKKHYETGEGTSTTQMEDEGHSCDVCGAVFESEKGLKAHQARHHAEDSGESEDDGSAPAALPGEFTCGQCGDGVASPRDLLAHRSMHATPTKFFCNICKVYFARALDLSSHTRARHADNDKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00935961;
- 90% Identity
- iTF_00827234; iTF_00826045; iTF_00666707; iTF_00033118; iTF_00034007;
- 80% Identity
- -