Hato011326.1
Basic Information
- Insect
- Hypomecis atomaria
- Gene Symbol
- -
- Assembly
- GCA_964007245.1
- Location
- OZ023286.1:7375004-7387134[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.015 1.4 10.7 0.9 3 23 209 230 208 230 0.90 2 24 2.6 2.4e+02 3.7 1.5 3 23 585 607 584 607 0.84 3 24 0.039 3.6 9.4 0.3 1 21 612 632 612 633 0.96 4 24 6.7 6.1e+02 2.4 0.2 1 23 674 697 674 697 0.89 5 24 0.00029 0.026 16.1 1.6 3 22 708 727 708 727 0.96 6 24 0.28 26 6.7 0.2 3 23 736 757 734 757 0.95 7 24 0.086 7.8 8.3 0.6 3 23 778 799 776 799 0.96 8 24 0.003 0.27 12.9 1.3 1 23 805 828 805 828 0.92 9 24 0.13 12 7.7 0.0 1 23 854 877 854 877 0.90 10 24 0.0059 0.54 12.0 3.5 1 23 882 904 882 904 0.97 11 24 0.0081 0.74 11.6 0.2 1 23 910 933 910 933 0.95 12 24 0.0044 0.4 12.4 1.3 1 23 942 964 942 964 0.97 13 24 0.00019 0.017 16.7 1.8 1 23 1013 1036 1013 1036 0.97 14 24 0.0077 0.7 11.6 1.4 1 23 1096 1119 1096 1119 0.96 15 24 0.0022 0.2 13.4 1.5 2 23 1144 1166 1143 1166 0.95 16 24 0.31 28 6.6 0.1 3 23 1173 1194 1172 1194 0.94 17 24 0.011 0.97 11.2 0.2 1 21 1240 1260 1240 1261 0.95 18 24 0.0013 0.12 14.0 0.6 1 23 1271 1293 1271 1293 0.93 19 24 0.00012 0.011 17.3 0.3 2 23 1388 1410 1388 1410 0.93 20 24 8.2e-07 7.5e-05 24.1 1.3 3 23 1417 1437 1416 1437 0.98 21 24 0.0039 0.35 12.6 0.2 3 23 1456 1476 1455 1477 0.96 22 24 0.22 21 7.0 0.0 1 23 1498 1520 1498 1520 0.98 23 24 0.029 2.7 9.8 0.6 1 23 1526 1549 1526 1549 0.95 24 24 0.00027 0.025 16.2 0.4 1 23 1557 1580 1557 1580 0.96
Sequence Information
- Coding Sequence
- ATGAATGTGAACTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATTTTTCCCACCACCAGTTCGGATGACACGGAACCTCCCGTCCTCGTCACGAAAATCAAGGATTGCGTGTCGGTCCAGATAAACGAACATGACGAACTGCCGACGAATGTCTGCAGGAAATGCATGGACAATGTCAATAACTGGCATATATTCAAGACAGTATGTGAAAGGACTCAAAACAAACTACAGTCTCTGATTAAAAAGGATGGCAGCCTACTAGAAGAGGTGAAAATAAAGAGAGAGCCATTTTATGAGGAGGCATATGATGATGGAGTGGTCATTGATGGGTCCTACCCAGTTATTGAGAATGTGGCATCTACCAGCAAGATCCAGCCTGAAGGCCCGCCCATCCTGGCTTCTCTGGGGCTCACACCAAGGAGTGACAAGGGGGTGGAGAGCGAGAACAACGAAGAAGACGACTACGAGGAAGAGATAAATGAGCCAGAACCACCTAAGCCAGTGAAGGTGCCAAACATGCCTGAAGTTTCCATCACAGTAATGCGCAACACCGGCGAAACACTCCACGCCAGGCAAGGCATACAACAACTCGCTTCCAAAGACTGCCTCATCTGCGGTCGTACCTACAGGTATTCCCACAACGCCCGCAGGCACGAACTCGCCTCCCACAGTTTCGACCGCTACACCAACAAAGTGACCAACAAAAAGTCACACCACTCACGCATGATGCCCAAACTCAGGCCCAACCCATTCAACCCGAAAGCTCGGCTCATGCCCAACCCCATTAGCCACAAACTCCAATTTATGCCCAAAAATATTCCCACCAAAATAATGCCTCAGAAAGTCACGCCCCCACCGAAGCCTATACCAATAAAAACTCTCAAACCGTCGCAGAATAATCTACCGTATCCCCTGCGCATAAAAGCGCTCAAAGACTTACAGATAAAGAAAAAAGAGCCGCAGATTTTAAAAACTTTGCTCACCGCGAAACCAGAAGTGCTAGTGTCGGAACCGGAAATAATGAATTCGGGTCCGGAAAGCCCGGAGACGCTGATATCCGAACCGGAGATCGCGTCTTTCCAGGTAGAGGCTATTCTATCTGAGCCCAACGAATACGATCAAAATCAGGAGGAGGAAGGTGAAATGGAAAACGAGAATCAACAGAATTACGATACCGTCGACATGGAGTCAGATCACGAGATCGAAATTGCTCGTCAGCAGGATGATGAGGCGGAAGCGGCAGAAAAGGACGATATAGCTGAAAATGACGATAATGCCAGCCAAGGCCAGGATCAAGATAACCATGTCGATGAGCTCGAGAAGAATGGCGAAAGTGAGAATGAAGGCGACCAGGATACCGGCGACAGCCAGGGAAATATGGAGATAGATGATAGTTGCACGCATGCGAATATCGATGATATGAGCAAATTGGATAAAGACGATATCGACGAAGTGGACAACGATGAACAAGAAGTGAATCCCGAGGCGGACgataatgatgacgatgaagACATGCCGCCGCCGCCCGTCGTAGAAATGAACGAGGAAATACAACATTCCTCGAGTGAAATGAACGAGGAAGATGAAGAATTAGATGAATCGGCCGATCTCAACGAAACGGGTGATGACAAACCGACGGAACTCGATCCTGATAAGACATACGTAACCAAATCTCAAAAAGAATTCATAGAGAAGTACCGAGATGTTATTCAACAGATAAACACTAAAAGGTGTCTGTGTTGCGACAAGACATACCCGCGTAGGAAGGCGGTCGTTCAGCATCTACAGAAAAATGGGCACAAAGTTCCTAAACATACGTGTTACAATTGCGTTATTACGTTCACTCACATCGGAGCATTGCTTAGTCACATGCGAGCGAACGCTTGCACGGATCTTTGGAAAATCGTATTCGATAAGAACGGTATTCCCGACGATATGGTGATCAAATATGAGCCGCAGGCAAAGATTCAGCCTAAGGACATTTTCAACGCTCGTTCCTACGCTTGCAGACTTTGCCCGGCCAAGTTCCAACTGAAGCAATCGATTATGAAGCATGTGCTAGATGTGCATGAAGATGGTCAGTCGAATGTTCCACTCGGCTGCGTTCACTGCCGGACCAGCTTCAAAGACAAATCTCTGCTCAAGAAACACATCCGTGTCGGCGAATGCACAGTGTACATCAACTGTGATCTTTGCTCGGAGCAATTTTCCAACATGCAAGACTTCAGCGATCACGCTTTGACTCTCCACGCGGATCATTTCGAGAAGTCGGACAATCAAAACAAATGTATCGACGGGCGAGCCACCGACTGCTCGCTCTGCGGAAAGAAGAACAGCAACTACTTGAATCTTGTAAAACATTTGAAGATGGTTCACAACGAAGACAGGCCGCATTACTGTCAAAACTGCGATGCCAAATTCGAGCATGCTGCCGATTTGAATAAACATATTTACGCAGAGCATTCTGATCAAGCGTTGGGACTGACGCCTCAAGAACCGGACATGGCTCTCGTAAAAGAGGAAGCCGAAGAATACCATTACTCGTGTACGGAATGTAACGCGATATTCGAAACTGTCGACGCCTGGACTGACCATCAAGTGGCGGAGCACAACCAAGTCGCGCATCACTGCGATCAGTGCGACAAAAAGTTCCTGCGACCATCGGAACTGGCCGAACACAAGAATACCCACTTGAGAGTCAAGTTCTACTCTTGCAGTGTTTGTCCGAACTCGTACAGCACTCCTCAGAAGTTGTCCGACCACGTCCAACAAGCTCACCCGTCCGGAGCCGGGGACACCGAATTCTTCTGCGACGTTTGTATCCGATCCTTCAAAAGTCGACAAGCCTACTCGAATCACATGCGCATCCACGCCAAAGTTCCGACTACGAACAGAAAGCCCGGCGAACAGAAAGGATTCGATCCGCGAATCATCGGCAAGCCGGTCAAACAATTCACCATGGTCCAACCTGGTTTCGTTAACTTTAAGCCGAATCCTAACGTTCCTAACGCACCTTACTCGTGTGATATTTGCGGTAAAGGCTTCATGCACAAAAAGAACATATGGAAGCATAAGAAAGTATTGCATGCGGACATTATAAATGATAGAAACGATAGCGAGGAGAATACGATGCATGCGTCCACGGAAGACGACGAGTACAACCCTGATGAGAACGGAGCTCTTTCCACGCCTCAATTTAACAGCTTCAACTTCTCAAATTTCACCAACAGCACGCCTCAGCCACCACAGCAGGATACCATGCCGTATTCTTGCGAGCTATGTTTCAAACGCTTCCCGATAAGAACCAGTCTGTGGAAGCACAAACGCGCTAAACACGGGATCGTGAACCCCGGTGCCAGTGCGAGTAACGAAACCGTTTCCCAACCCAAGTCAGAATCAGGTCGCTCTAGTTGCACCATCTGTAAAATAACTTTCGCTGATAAGAAATCGTACTACCGGCACAGGAAGAATGTGCACAAAACGGCCACCGAAATGTGCAAGCTTTGCGGCAAACCGCTCAATTCGACCTTGGAATTGTACGAACATCTAAAAGCTGCACACGCTAGGGAATTGCTGGGATATAACGCCAATCAGGGATCGAGTAAAACACAGGCGCAGGACGTGTCTCAAGATCAAGATGCCGATTACGAAAATGAAACGGAATCGGTTGATCCCAGCCAGGACTACCAGGCTCGGTACCCTTGCGATACTTGCGGGAAACAGTTCGTCGGTTTGCTGGCTTTACAGAACCACCAGTGTATAAACCAACTCCCCCAGCAACCGCAGACTTTCGACTGCGAAATTTGTCACAAGAGTTACACCTCTATCGCCGCATTGAAGAGTCACCGCGGTTGGCACTTGCGCTCGCCGGATGGTAAGGCGGCCGCCAACAACAGTGGCCTTTGGATGCCGCAGCACAAAGTGACGAGTAAAGTCAGCAAACACGAAGTCGTCGACGCGGTGCAGTTGGCGCGCGTCTCACATTCGACCTCCTCGCACTCGGCGCCCGCGGCGGCCGTCACGGCTAAACGGAGATTACCGCCAGAAGTGGAAGTCACGGTCGTCAATCCTAACAAAAAATTGCGCTCCGACGACTCGGTCGAAATGGATCAGCAAAACAACGAAGCGACAGACGGGCGGTACTGCACTATCTGCGATAAAGAATTTACGAAACGCGCAGCGTATCAACGTCATATGGACGAAGTTCATCAGCCGAACTCCGTGTTCTGCCCGGTCTGTGATAGGAGTTTCACGAGGAAGTCGACGCTCCTTGTGCATATGAAGAAACATTACGAGAGCGGGGAGGGTTCGTCGACCGCGCAGGTGGACGACGACGGTCACGGTTGCGACGTTTGCGGCGCCGTGTTTGAAAGCGAGAAAGGTTTGAAGGCGCATCGAGCGAGGCATCACGCCGAGGATTCCGGGGAGTCGGAAGACGACGGGAGCGCTCCGATAGCGCCCCCGGGAGAGTTCACTTGCGGCCAGTGCGGCGATGGAGTAGCCAGTCCGCGCGATTTACTCGCTCACCGCTCGATGCACGCGACTCCCACCAAATTCTTCTGTAATATTTGTAAAGTGTACTTCGCTCGAGCGCTGGACCTTTCGTCGCACACTCGCGCGAGACACGCGGATAATGAGAAAGTGTTCTTCCCCTGTGCCATGTGTGACCGCTTCTATATGAATAAGAAGAGCTTACAGCGGCACATTGAAATGGCGCATTGA
- Protein Sequence
- MNVNYDRVCRLCLSSRGELLPIFPTTSSDDTEPPVLVTKIKDCVSVQINEHDELPTNVCRKCMDNVNNWHIFKTVCERTQNKLQSLIKKDGSLLEEVKIKREPFYEEAYDDGVVIDGSYPVIENVASTSKIQPEGPPILASLGLTPRSDKGVESENNEEDDYEEEINEPEPPKPVKVPNMPEVSITVMRNTGETLHARQGIQQLASKDCLICGRTYRYSHNARRHELASHSFDRYTNKVTNKKSHHSRMMPKLRPNPFNPKARLMPNPISHKLQFMPKNIPTKIMPQKVTPPPKPIPIKTLKPSQNNLPYPLRIKALKDLQIKKKEPQILKTLLTAKPEVLVSEPEIMNSGPESPETLISEPEIASFQVEAILSEPNEYDQNQEEEGEMENENQQNYDTVDMESDHEIEIARQQDDEAEAAEKDDIAENDDNASQGQDQDNHVDELEKNGESENEGDQDTGDSQGNMEIDDSCTHANIDDMSKLDKDDIDEVDNDEQEVNPEADDNDDDEDMPPPPVVEMNEEIQHSSSEMNEEDEELDESADLNETGDDKPTELDPDKTYVTKSQKEFIEKYRDVIQQINTKRCLCCDKTYPRRKAVVQHLQKNGHKVPKHTCYNCVITFTHIGALLSHMRANACTDLWKIVFDKNGIPDDMVIKYEPQAKIQPKDIFNARSYACRLCPAKFQLKQSIMKHVLDVHEDGQSNVPLGCVHCRTSFKDKSLLKKHIRVGECTVYINCDLCSEQFSNMQDFSDHALTLHADHFEKSDNQNKCIDGRATDCSLCGKKNSNYLNLVKHLKMVHNEDRPHYCQNCDAKFEHAADLNKHIYAEHSDQALGLTPQEPDMALVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYSCSVCPNSYSTPQKLSDHVQQAHPSGAGDTEFFCDVCIRSFKSRQAYSNHMRIHAKVPTTNRKPGEQKGFDPRIIGKPVKQFTMVQPGFVNFKPNPNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADIINDRNDSEENTMHASTEDDEYNPDENGALSTPQFNSFNFSNFTNSTPQPPQQDTMPYSCELCFKRFPIRTSLWKHKRAKHGIVNPGASASNETVSQPKSESGRSSCTICKITFADKKSYYRHRKNVHKTATEMCKLCGKPLNSTLELYEHLKAAHARELLGYNANQGSSKTQAQDVSQDQDADYENETESVDPSQDYQARYPCDTCGKQFVGLLALQNHQCINQLPQQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDAVQLARVSHSTSSHSAPAAAVTAKRRLPPEVEVTVVNPNKKLRSDDSVEMDQQNNEATDGRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDRSFTRKSTLLVHMKKHYESGEGSSTAQVDDDGHGCDVCGAVFESEKGLKAHRARHHAEDSGESEDDGSAPIAPPGEFTCGQCGDGVASPRDLLAHRSMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00827234;
- 90% Identity
- iTF_00207177;
- 80% Identity
- -