Basic Information

Gene Symbol
JARID2
Assembly
GCA_010883055.1
Location
NC:64159181-64204232[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.7e-22 8.5e-19 67.4 0.0 6 89 1406 1487 1402 1487 0.94

Sequence Information

Coding Sequence
atggtatTGAATCGAaatgataaaagaaaaagaaaagaaggaGATCTCGTGGACCTCATGGATCCCGTCTCAGAATCACCGAAAAGgaCAAAAGTTCACGCTCAAAGAAAATTCGCACAAGGAGCACCAACAAATTACAGTCCGGCGAGTACACctgttaaagaaaaagaaaaatcgaagccACCTGTTATCACTGAATTGATAACTCATAAGCGTCCAAACACAGAAGATTTCCTGACATTCCTTTGTTTTAGAGGAACTTCAATACTCCCGCCGAGTTTGAATTTCTTCAACATCAGtacaaagaaagaaaaatcagAGACAAAATCGACAAAAGCTTCCAGGCCTACTCCTTCCACCTCGAAAGCAACGTCATCCGAATCCGGAAAATCCAACTCGCCTCAAAAGTCAACAAAATCCAAAAGTAATGCCCCTCTTAAGAAAGAATTTCCGAAGGGAATCCAAAAGACAATTAAATTCAAGACAAAGACCTCAACAGCTCAAGCGTTGAAGAAGAAATATCTGGAGCAGAGGCTTGCcaaacaacgaattaaaaacaaCGTCAAAGCAGCCTACGTTATAAGAACTCGATCCTCCACAGAACAAAATGCAGGCAAACCTCTGCCTAAATTAGCTTCGAGAAATTTAGTACCAAAATCCGAATGTAAACGACGCGGTTTACGAAGTGGTGGTCTCGTCGAGAAAAGTGTCGCTCCTAAAACTGCTGCAAAAATCAAGCGATCTCCGATGAAACCCAAGAAGAGAGTGCTTGCCAAGAGCAAAAGTAACTCTTCTAATTCAGAGTCTTCCGATGATGAGGAGCTGAAATCTTCCCAAGGGAAGAAAGTAACGAAATCTCTACCTAAGAAGGTTTGCACGAGGAATAAATCGGATCTGAGAAGAGTGACGAGATCGTCCGTAGATACGAAATCCCCTCAACACCTTTCGCGAAGACCGACGAGAAAGACGAAAGAAGCCGCGGCTGTATATATGGAAATCTTGGGCCGGAAACTAGTCAGTCCTGAGTTGGAAAACGATGAGGATAATATTTCCCTTGATAGCTTTCCAGAATTGCCAAATGCTCGCAGGTCTCTGAAGGAGGAGATTGAGATTAAGGCGAAAGTGAAACAGAATGCAAAGTTTGTTGCCAAAGAGAAGGAGAGTAAAGGAAGTTCTGTGAGTAGTAAAAAGGTCGAGAAGATTGAAAAGATAGAAAAGGTCGAGAAGATCGAGAAGCTTCGGGCTGTGAAAACGGTTTTAAAGAGCAAGAGGCTTGTGAAGATTCACAAGTATTGTGAACTCGAGTCTGAAGACGAGTCAGAGAGTTCAACCGATAGTGAGAAAAGTAGCGAAGCCAGGCCGATTACGAGGAGGAGTTTGAATAAGGTGATTAAACCTGCAAATAGAAGTTTGAGATCTTCGACGAGGAATATTCCAGTGAAGGTGGACGTTCAGAGTGCAGAGGTAAAGAAGGAAGTCAGAAAGGAGAAGATTGTGGTGAAGAGGAAACGAGAGGTGCTTGAGAAGAAGAAGGAAGAAGGAAAGGAGGAAAGTAAAAAGGATGAAGAAAAGAACGAGGCAAGAGTTAAGGAAGAGAGCAAAAAAGCTGAGGGTGTTCAGAAAGATAGTAAAAAGGAGGATTTGAAAAGTGATAGCAAAAAGGAAGAAACTACAAAGACTGATATTAAAAAGGGAGAATCCGTAAATGAAGTGAGTAAAAAGGATGATACTAAAATAGAtgatactaaaaaagatgatacTAAAAAGGAGGAAGTAAAAAGGATTAAAAAGGAGGAAATGAAGAGAGAAGAAGTTAAAAAGACAGTTAAGAAAGAAGAATCCAGAACTGAAAGTAAAAGTGATACTAAAAGTGAAACTAAAAgcgtaactaaaactctaaataaGAAAGATACTAAAACAGAAAGTCCTGATGATGTTGAGAATGTAGAATCGGACGAGGAAACACTTGGTTCGCTTCTAATTAAgatgaaaaagaagaaagaagcTGATTCTCTCAAGAAGACTGAGCAAACCAAGAGCAAAGTTATCAAAGAAGTTAAGGATCCAAAAATATCCGACGATGAAGAGGCGTTCAGAGGTTTTACAAAAAAGGCAATTTCGAGTGTTTTGGATTCGTGTCAGTCTCACGTGAATGCGAATCTCCTAATTTCCGAAGCAGAAATAAAATCATCAGTTGAACCACCATCCCCTGAACGACTGGAATCACCTCCCGAGGTCAAGGATGATACTCTAATTATAGAGCAACCTTCAATTATTCCCGTTTTGAAACCTGCTCCTGAAATTAAAATCGTGACTCCGAAAGCTGATTCTTCGAAACAGGATAAAACGCATGTTTACAAATCTGAGGCCGAGGTGAATATAATCGACATGCCATCGTCAGCGACTCTTGGACGAAAGGAGAGAGTAAATATGTCGACTGAGCAGATAGAAAAGTGGCTGTGCGAGAGTTCACTTGCGAAAGAGGAGAGCAAAGTTGAAATGGAAAACGTGACTAATTTTCAGTACGAGACTGTTGAGAAACCGAAAGTCTCCACGCATCATTTATCCATTTCCTCGAAGATTCAACATTTAGTGAGGCCGGTGAATGTCACTCTTGCAAAATTAAATGATAAGAAGGGCAAGCCTTCGAATTTGGTAGTTTTAAGCCCACAAGTGAGTGCAATTAAACATCCGGGCTCTTTGCTGGCTGTGAAGAATAAACCAGTTGAAGTCGAGCCAAAACAGCCAATTTTGGTAAGCAAACCTCAACCTCCGAAGGTGAGCAAGGAATCTCCGAACGCAGAAGATAGTGATGCGGTTTCGAAATCGGATCAAAATTCTCTCGACGGTTCCCCGGATAAGAAGAaccttgaaaagaaaattctctccCAACCGAGGAAATTATTTCTACCAAAGGTAAAGGAGAGGAAGATCGCAGCTCCGAGTGCGAATGCTTTTTCCCCGGAAAATGAAAGTAGTGTTTATGCATTTGAAAGTGATACGGAAGTTCCGGTAAGTACCCCGTTCAGGAGAAAAAGCAAACCAGCTTCACCTTTGATAAAGGGTCCAGATGAAAAAAGCAGTAAAGATAATCCCAATAAGGATAGCAATGATACTCAGAGTTCTGAATTATCCGGAGGTGAGAATTTCAAAGTTCCTGAAGCGAAAAAAGAGACGGAAACTCCGATAATTTCGACCAAGACGAACACGATTGATTTGAAGAATTTGGCTAACATGCAAGTTCTTTCTCTGGACAAGCTGACGACTAATTGGAGCAATGTTAATTGCAGTGCGTCTATTGCTGTCCAGGTGAATTTAGATGAACAAAATCAAGTTCAAAATTCAGAAGTTGATGAAAATGGACAGCTAAAGAGTACGGAAATATCGACGCAAACTGAGGGATCGAATGACAATGACGACGATAATGATGGACAGCTATTTTATATTCCTTTGCAAGCGGTCACGAGGAATGGGTCGGTGCAAGGTCATCAGCTGATACAAGGAGTGGCTGTTAAATTGGGAACGGAGGGACCAACTGGACCGAATCAGAGAGTTTTGTTAAAGGCGAAACTTGTTACGAAACCACCTTTGAATGTAGCCAGGGTTCCTCCGGTTGGAACTGTTCAACCGACTGCTAGAGCTCCGCCGATTGCCTCGACTTCTAGTGCAGATCATCCAATGCCGTCGACTTCATCGGCAGTTCCTGTAGCCTCGACTTCCGAAATTCGAGGTGTCGTGGTTCATAAGGAGGAGAATTTAAATCAGGGCGGAAATGTTCGAAGTAAGGAAACTGCTACGAGTTCAGGTGGAGTTGAAAAGGCTGAAAAGGTTTTGAAGTCTCAGAAGGCATCCAGGGAGAGGAAGGTTTCTATCGATTCCGGAAAACCTACCAAGAGGTCCCAAGGAAAGTCGAAgcagaaaattcttgaaatctgttCACCAACAAACGCAACAACCTTCCCAGGAACAAAAGATCCAAACGAAGAGGCTCGTCTCGTAGAAGCTCCGACCTTCCACCCAACCGAGAAAGATTTTCAGGATCCTCTCGAGTACATCGATAAAATTCGACCCATCGCCGAAAAATTCGGTATCTGTCGTGTCGTTCCTCCTGGAAACTTCAAACCCGAATGCAAAGTCTCCGACGATATGCGATTCACAGCTTACAATCAATACGTCCATCGGATGCTCCACAGATGGGGACCCAACGTCAAAGAAATGATGGCTATCAGAAAATACCTAGCCACCCAGAGTATAACCCTGAATCATCCGCCCTGGATCGGAGGAATGGAAATCGACCTTCCCCATTTGTACCAAACAGTCCAAAGCCTCGGTGGCTTGAAGGAAGTGATCGAGAAGAAAAAGTGGCAGAAAGTGTCAGATGGTATGAAAATTCCCAGGTCAGCTCAGGATCGTGTCACCAAGTTGGACGATATCTACTGCAAGTATTTATTGCCATATGATACACTCTCCCAGGCGGAGCGAGACAAGCTCTTTGAGGAAGTTGAGTCGGAATGGAAGACCCGGGAAGCCAAAGCATTGCGGAGATTGGAAGCTCAGTCGAATGACAacgaggaggaggaggatgaggACAGTTCTGATGAAATTGAAGAGTGTATTGTCAAGGGAAGAAATATGCCTCTGAATGCCTTCTATCGAATCGCCAGGAACACCCAGAGAATGTGGTTCTCGGAGAATCAGAGATCAGGCAATGAGGCTGAAGGAGCGTCAGCTTCGGAAGTTGAGGCGGCTTTTTGGAAGCATGTGGCTGAGAAGAAACGACATGTTTGTGTTCACGCTGCTAGTATTGATTCCAGCGGGAGGGGATTTGGATTCTCTGTTGCTAAGAATAGTCCTTGTGCGAGACATCCTTGGAATTTAAAGGTTCTGACTAATAATGCTGGGTCTGTGCTGCGAGCTATGGGTCCCTTGATGGgTGTGACCGTACCGACTCTGCACGTTGGAATGCTTTTTAGTGCTTGCTGCTGGTATCGAGATCCTCATGGACTTCCCTGGATCGAATATTTGCACACTGGAGCGAAAAAAATTTGGTACGGGATTCCTGATGAGCATAGCAACAATTTCAGAAATGCTCTCTCGAAAATGGTGCCGcgttattgcaaaaataaaaaaatttggctgCCTTCTGATACTGCCATGGTGCCTCCGGAAATGCTCGTGAAAAACGACGTTCCCTTGTGTCAAACAGTCCAGGAACCTGGACAATTTATCGTCGTTTTTCCTAAAGCTTTCACATCGAGTATTTGCACTGGTTATGTCGTTTCAGAAAGCGTCTATTTTGCACAGTCCTCTTGGCTCGAAACTGCCGAACAAGTTTTTCAGgatataCACGACAGTTGCGAACCATCAATATTTTCTTTCGAAAGATTGCTCTTCAGCCTTATCAATGACACAAGATCTCACGTAGAAATTCTGAAACAGATCTTGCCAACAGTGAAGAGAGTCTGTGAAAGGGAAATTGATTATCGCAGACAGTTGAAGAGTCTGGGGCTAACAAATACGGAAAAATTGCCAACGCCGGAAAGCGGAAAACGAGGAAAGGGCAAAAAAATCAAAGAAGAGGATGGCGATTTCGAGTGCGAAACTTGCCGGGCTAGTTTGTTTGTTTCTTTGGTTAGCAATTCACTAGATGATGGCATGTATTGCCTTCCCCATGGGATTCAGCTTTTGACGAGGAAAAAACATCTCTTGAAAAATTGCCTTCTAATGATCACATACAGCGAGaGCGACCTGGACGATTTGATCCACAAATTGGAGGACAGAATCGAAGCAAAATCGAAGAAAAGTAATTCTTATAGACAAAATAAGTAG
Protein Sequence
MVLNRNDKRKRKEGDLVDLMDPVSESPKRTKVHAQRKFAQGAPTNYSPASTPVKEKEKSKPPVITELITHKRPNTEDFLTFLCFRGTSILPPSLNFFNISTKKEKSETKSTKASRPTPSTSKATSSESGKSNSPQKSTKSKSNAPLKKEFPKGIQKTIKFKTKTSTAQALKKKYLEQRLAKQRIKNNVKAAYVIRTRSSTEQNAGKPLPKLASRNLVPKSECKRRGLRSGGLVEKSVAPKTAAKIKRSPMKPKKRVLAKSKSNSSNSESSDDEELKSSQGKKVTKSLPKKVCTRNKSDLRRVTRSSVDTKSPQHLSRRPTRKTKEAAAVYMEILGRKLVSPELENDEDNISLDSFPELPNARRSLKEEIEIKAKVKQNAKFVAKEKESKGSSVSSKKVEKIEKIEKVEKIEKLRAVKTVLKSKRLVKIHKYCELESEDESESSTDSEKSSEARPITRRSLNKVIKPANRSLRSSTRNIPVKVDVQSAEVKKEVRKEKIVVKRKREVLEKKKEEGKEESKKDEEKNEARVKEESKKAEGVQKDSKKEDLKSDSKKEETTKTDIKKGESVNEVSKKDDTKIDDTKKDDTKKEEVKRIKKEEMKREEVKKTVKKEESRTESKSDTKSETKSVTKTLNKKDTKTESPDDVENVESDEETLGSLLIKMKKKKEADSLKKTEQTKSKVIKEVKDPKISDDEEAFRGFTKKAISSVLDSCQSHVNANLLISEAEIKSSVEPPSPERLESPPEVKDDTLIIEQPSIIPVLKPAPEIKIVTPKADSSKQDKTHVYKSEAEVNIIDMPSSATLGRKERVNMSTEQIEKWLCESSLAKEESKVEMENVTNFQYETVEKPKVSTHHLSISSKIQHLVRPVNVTLAKLNDKKGKPSNLVVLSPQVSAIKHPGSLLAVKNKPVEVEPKQPILVSKPQPPKVSKESPNAEDSDAVSKSDQNSLDGSPDKKNLEKKILSQPRKLFLPKVKERKIAAPSANAFSPENESSVYAFESDTEVPVSTPFRRKSKPASPLIKGPDEKSSKDNPNKDSNDTQSSELSGGENFKVPEAKKETETPIISTKTNTIDLKNLANMQVLSLDKLTTNWSNVNCSASIAVQVNLDEQNQVQNSEVDENGQLKSTEISTQTEGSNDNDDDNDGQLFYIPLQAVTRNGSVQGHQLIQGVAVKLGTEGPTGPNQRVLLKAKLVTKPPLNVARVPPVGTVQPTARAPPIASTSSADHPMPSTSSAVPVASTSEIRGVVVHKEENLNQGGNVRSKETATSSGGVEKAEKVLKSQKASRERKVSIDSGKPTKRSQGKSKQKILEICSPTNATTFPGTKDPNEEARLVEAPTFHPTEKDFQDPLEYIDKIRPIAEKFGICRVVPPGNFKPECKVSDDMRFTAYNQYVHRMLHRWGPNVKEMMAIRKYLATQSITLNHPPWIGGMEIDLPHLYQTVQSLGGLKEVIEKKKWQKVSDGMKIPRSAQDRVTKLDDIYCKYLLPYDTLSQAERDKLFEEVESEWKTREAKALRRLEAQSNDNEEEEDEDSSDEIEECIVKGRNMPLNAFYRIARNTQRMWFSENQRSGNEAEGASASEVEAAFWKHVAEKKRHVCVHAASIDSSGRGFGFSVAKNSPCARHPWNLKVLTNNAGSVLRAMGPLMGVTVPTLHVGMLFSACCWYRDPHGLPWIEYLHTGAKKIWYGIPDEHSNNFRNALSKMVPRYCKNKKIWLPSDTAMVPPEMLVKNDVPLCQTVQEPGQFIVVFPKAFTSSICTGYVVSESVYFAQSSWLETAEQVFQDIHDSCEPSIFSFERLLFSLINDTRSHVEILKQILPTVKRVCEREIDYRRQLKSLGLTNTEKLPTPESGKRGKGKKIKEEDGDFECETCRASLFVSLVSNSLDDGMYCLPHGIQLLTRKKHLLKNCLLMITYSESDLDDLIHKLEDRIEAKSKKSNSYRQNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2