Basic Information

Gene Symbol
JARID2
Assembly
GCA_032362435.1
Location
JAUMHM010000083.1:19908970-19932449[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 6.9e-22 8.8e-18 66.7 0.0 6 89 1386 1467 1382 1467 0.94

Sequence Information

Coding Sequence
atggtATTGAGTCGAAATgatgaaaggaaaagaaaagaaggaGATCTCGTGGACCTCATGGATCCCGTATCAGACTCTCCGAAAAGgacaaaagttCACGCACAAAGAAAATTTGCACAAGGAGCAGCAACAAATTACAGTCCGGCGAGTACGCCtgttaaagaaaaagaaaaaccgAAGCCACCTGTTGTCACTGAATTGATAACTCACAAGCGTCCAAACACGGAAGATTTTCTAACTTTCCTTTGTTTCAGAGGAACTTCAATACTCCCCgcgagtttgaattttttcaacgtgAGTACAAAGAAGGAAAAACCAGAGTCGAAATCGGTGAAAGCTTCCAGGGTGACTCCTTCCAGCTCGAAAGCAACGCCTTCCGATTCCTCGAAATCCAATTCGCCTCAAAAGGCCACTAAATCGAATAGCAATGCCCCCCCTAAGAAAGATTTTCCCAAGCGAATTCAAAAGACGATCAAATTCAAAGCAAAAACCTCAACAGCTCAAGCGTTGAAGAAGAAATACCTGGAACAGCGGCTTGCAAAACAgcgaattaaaaacaaaatcaaggCTTCTTACCAAAATGTAGAAAAACCTGTGGCTAAACTAGCTGCGAGAAACTTTGTACCAAAATCAGAATGTAAACGACGCGGTTTACGAAGCGGTGGTCTCGTTGAGAAAATCGTCGCTCCTAAAATCGCCCCAAAAATAAAGCGATCTCCGATGAAACCCAAGAAGAGAGTTCTTGCCAAGAGCAAAAGTGATTCTTCTAATTCGGTATCTTCCGATGATGAGGAGCTGAAATCTTCTCAGGGGAAGAAAGTAACAAAACTTCTACCTAAGAAGGTTTGCGCGAAGAAGAAATCGGATCTGAGAAGAGTCACCAGATCTTTGGTAGATACGAAATTCTCTCAACATCTCTCGAGAAGGCCTACGAGAAAGACGAAGGAAGCTGCGGCTGTTTATATGGAAATCCTGGGTCGGAAACTAGTCAGTCCTGAGTTGGGAAACGATGAGGATAATATTTCCCTTGATAGCTTTCCAGAATTGCCGAACGCTCGCAGGTCTTTGAAGGAGGAGATCGAAATTAAGGCGAAAGTGAAACAGAATGCAAAGTTTGTTGCCAAAGAGAAGGAGAGTAAAGGAAGTCCTGTGAGTAGTAAAAGGGTCGAGAAGATCGACAAGCTTCGGGCTGTGAAAACGGTTTTGAAGAGCAAGAGGCTTGTGAAAATTCACAAGTATTGTGAACTTGAGTCTGACGAGGAGTCAGAGAGTTCGAAcgatagtgaaaaaagtagccAAGGTAGGCCGATCACGAGGAGGAGTTTGAATAAGGCGAGTAAACCTGCAAATAGAAGTTTGAGATCTTCTTCGCGGAATATTCCAGTGAAGGTGGAAGTCCAATGTTCTGAggtgaagaattttattgagaAGAAGGAAGTCAGAAAGGAGAAGGAGAAGGTTTTGATCAAGAGGAAACGAGAGGTAtctgagaaaaagaaagaagaaggaaagaaGGACAGTAAAAAGGGTGAGGAAAGAGTTAAGGAAGagagcaaaaaagatgaaggtGTTAAGGAAGATAGTAAAAAGGAGGATTTGAAAGGTGACAATAAAAAGGAAGAAACCATAAAGACTGATATTCAAAAGAAAGAACCTATAAAGGGAGATAGTAAAAAAGACTGTATTGAAAAGGATGATCCTAAAAAggaggaagtaaaaaaaattcaaaaggacgaaACAAAAGAAGAGGAAGTTAAAAAGACAGTTAAGAAAGAAGAATGCAAAAGTGAAAGTAAAAGTGATACTAAGAGTGAAACTAAAAGTGAAACTAAAACTCTAACTAAGAAAGATACTAAAATAGAAATTCCCAAAGTTGCTGAGACTGTAGAATCTGATGAGGAGACTCTTGATTCTCTTCTcactaaaatgaaaatgaagaaagaagcTGATTCTCTTAAGAAGACTGAGCAAAATAAGATGAAAGTTCTCAAAGAAATTAAGGATCCGAAGATATCCGACGATGAAGAATCGTTTAAAGGTTTTacgaaaaaggcgattttgaaTGTTCTGGATTCGTGCCAGTCTCATGTGAATGCGAATGTCCTTGTTTCCGAAGAAGAAACAAAATCTCCAGTTGAAATATCATCCCTTGAACGACTGGAATTATCTCCTGAGGTAAAGGATGATACTTTTATTATAGAGCAACCTCCAGTTATTCCCTTTGATAAACCTGCTCCTGATATTCAAATCTTAACTCCGAAAGCTGGATCTTCGAAACAGGATAAATCCTGTGTGCACAACTCTGACACCGGAGTGAATATAATCGACATGCCATCTTCAGCGACTCTtggaagaaagaagagagtaaATATGTCGACTGAGCAGATAGAAAAGTGGCTGAATGAGAGTTCACTTGCGAAAGAGGAGAGCAAAGTTGAAATGGAAAACGTTTCCAGTTTTCATTACGAGACTGTTGAGAAACCGAAAGTCTCCTCGCATCATTTATCCATTTCCTCGAAGGCTCAACATTTAGGGAGGCCGGTGAATGTCACTCTtgcaaaattgaatgataagAAGGGTAAGCTCTCGAATTTGGTGGTTTTAAACCCACAAATTAGCTCTATTACACATCCAAACACTTTGCTGGTTGTAAAGAATAAACCAGTTGAAATCGAGCTAAAACAACCAATTTTGGTAAGCAAAACTCAGCCTGTGAAGTTAAGCAAGGATTCTCCGAATGCAGAAGATAGTGATGCAGTTTCCAAATCGGACCAAAATTCTCTCGACGGCTCTCCGGATAAGAAgaacttcaacaagaaaattctcTCCCAACcgaggaaattatttttaccaaAGGTAAAGGAGAGAAAGGTTGCAACTCCTAGTGCGAATGCTTTTTCCCCGGAGAATGAAAGTAGTGTTTATGCTTTTGAAAGTGATACGGAAATTCCGGTAAGCACGCCTTTCAGGAGAAAACGCAAGCCAGCTTCGTCTTTGGTAAAAAGTCAAGGGGAAAAAGGCAATAAAGATAATCCTAATAAGGATAGCAATGATACTCAGAGTTCTGAATTATCGGGAGGTGAGAATTTTAAAGTTCCTGAAGCGAAGAAAGATACAGAAACTCAGATAATCTCGACAAAGATGAACACGATTGATTTAAAGAGTTTTGCTAATTTGGCTAATATGCAGGTTCTTTCTCTGGATAAGCTGACGACCAATTGGAGCAATGTTAATTGCAGCGCGTCTATTGCTGTCCAGGTGAATTTAGATGAACAGAATCAAGTTCAGAATTCAGAAGTTGACGAAAGTGGACAGCAAAAGAGTATTGAAATATCTACGCAAACTGAGGGATCGAATGACAATGACGATGATAATGATGGACAGCTGTTTTATATTCCTTTGCAAGCGGTTACGAGGAATGGGTCGGTGCAAGGTCATCAGCTGATACAAGGAGTGGCTGTCAAATTGGGAACTGAGGGACCAACTGGACCGAATCAGAGAGTTTTGTTGAAGGCTAAGCTTGTGACAAAACCGCCTTTGAATGTTGCCAGGGTTCCTCCTGTAGGAACTGTTCAACCAACTGCTAGAGCTCCACCGATTGCTTCGACTTTTAGCGCGGAAAATCCAATGCCATCGACTTCATCGGCAGTTTCTATACCCTCGACTTCCGAAATTCGAGGTGTCGTGGTTCATAAGGAGGAGAATTTGAATCAGGTTGGAAATATTCAAGCTAGGGAAACTGCTACGAATTCCACTGGGACTGAGAAGGTTGTGAAGTCTCCGAAAACACCCAGAGAGAGGAAGATTTCTGTCGATTCCGGAAAACCTACCAAGAGGTTACAAGGAAAGTCAAAGCAGAAGATTCTGGAAATCTGTTCACCAACAAACCCGACGACCTTCCCAGAAATGAAGGATCCAAACGAAGAGGCTCGTCTCGTAGAAGCTCCGACCTTTCACCCGACCGAGAAGGATTTTCAGGACCCTCTAGAGTACATCGATAAAATTCGACCCATCGCCGAGAAATTCGGTATCTGTCGAGTCGTTCCTCCTCGAAACTTCAAACCAGAATGCAAAGTCTCAGACGATATGAGATTCACAGCTTACAACCAATACGTCCATCGAATGCTCCACAGATGGGGACCCAACGTAAAAGAAATGATGGCTATCAGAAAATACCTAGCCACCCAGAGTATAACTTTGAGTAGTCCACCCTGGATTGGAGGAATGGAAATCGACCTTCCCCATTTGTACCAAACAGTCCAAAGCCTCGGTGGTTTGAAAGAAGTCATCGAAAAGAAAAAGTGGCAGAAGGTATCAGATGGTATGAAAATCCCCAGGTCTGCTCAGGATCGAGTTACCAAATTGGACGATATCTACTGCAAATATTTATTGCCTTATGATACACTTTCCCAGGGGGAGAGAGACAAACTCTTCGAGGAAGTGGAGTCAGAATGGAAGAAACGGGAAGCCAAAGCAGTGCAGAGATTGGAAACTCAATCGAACGATAACGAAGAGGAAGAGGATGAAGACAGCTCTGATGAAATTGAAGAGTGTATTGTCAAGGGAAGAAATATGCCTCTGAATGCTTTTTATCGAATTGCTAGAAACACTCAGAGAATGTGGTTTTCGGAAAATCAAAGATCAGGAAATGAAGCTGAAGGAGCCTCAGCTTCTGAAGTTGAGGCTGCTTTTTGGAAGCATGTTGCTGAGAAGAAACGCCACGTTTGTGTTCACGCTGCCAGTATTGATTCTAGCGGGAGAGGATTTGGATTCTCTGTTGCTAAGAATAGTCCTTGTGCGAGACATCCTTGGAATTTAAAGGTCCTGACTAATAATGCTGGGTCCGTGCTGAGAGCTATGGGTCCCTTGACGGGTGTGACCGTACCGACTCTGCACGTTGGAATGCTTTTTAGTGCTTGCTGCTGGTATCGAGATCTGCATGGACTTCCTTGGATCGAATATTTGCACACTGgagcgaaaaaaatttggtatggGATTCCTGATGAGCACAATAACAATTTCAGAAATGCTCTTTCGAAAATGGTGCCGCGTTActgcaaaaataaaactatctGGCTGCCTTCTGATACCGCCATGGTGCCTCCGGAAATGCTCGTGAAAAACGGGGTTCCTTTGTGTCAAACGGTCCAGGAACCTGGacaatttatcattgtttttcCTAAAGCTTTCACTTCGAGTATTTGCACTGGTTATGTCGTTTCGGAAAGCGTCTATTTTGCACAGTCCTCTTGGCTTGAAACTGCTGAACAAGTTTTTAAGGATATACATGACAGTTGCGAAccatcaatattttcttttgaaagattGCTCTTCAGCCTTATCAATGACACAAGATCCCACGTCGATGTTCTGAAACAGattttgCCAACTGTGAAGAAAGTCTGTGAAAGAGAAATTTATCACCGTCGACAATTGAAGGCTCTGGGGCTAACAAATACGGAAAAATTGCCAACACCGGAAAGTGGAAAACGAGGAAAGGgcaaaaaagtgaaagaagagGATGGCGATTTTGAGTGCGAAACTTGTCGAACTAGTTTGTTTGTTTCTTTAATTAGCAATTCACTAGATGATGGCATGTATTGTCTTCCCCATGGGATTCAACTTCTGACAAAGAAAAAACATCTCTTGAAAAATTGCCTTCTGATGATTGCGTACAGCGAGAACGAGCTGGACGATTTGGTTCACAAATTGGAGGACAGGATCGAAGCAAAATCGAAGAAAAGCAATTCCCATAAACAAAATAAGTAG
Protein Sequence
MVLSRNDERKRKEGDLVDLMDPVSDSPKRTKVHAQRKFAQGAATNYSPASTPVKEKEKPKPPVVTELITHKRPNTEDFLTFLCFRGTSILPASLNFFNVSTKKEKPESKSVKASRVTPSSSKATPSDSSKSNSPQKATKSNSNAPPKKDFPKRIQKTIKFKAKTSTAQALKKKYLEQRLAKQRIKNKIKASYQNVEKPVAKLAARNFVPKSECKRRGLRSGGLVEKIVAPKIAPKIKRSPMKPKKRVLAKSKSDSSNSVSSDDEELKSSQGKKVTKLLPKKVCAKKKSDLRRVTRSLVDTKFSQHLSRRPTRKTKEAAAVYMEILGRKLVSPELGNDEDNISLDSFPELPNARRSLKEEIEIKAKVKQNAKFVAKEKESKGSPVSSKRVEKIDKLRAVKTVLKSKRLVKIHKYCELESDEESESSNDSEKSSQGRPITRRSLNKASKPANRSLRSSSRNIPVKVEVQCSEVKNFIEKKEVRKEKEKVLIKRKREVSEKKKEEGKKDSKKGEERVKEESKKDEGVKEDSKKEDLKGDNKKEETIKTDIQKKEPIKGDSKKDCIEKDDPKKEEVKKIQKDETKEEEVKKTVKKEECKSESKSDTKSETKSETKTLTKKDTKIEIPKVAETVESDEETLDSLLTKMKMKKEADSLKKTEQNKMKVLKEIKDPKISDDEESFKGFTKKAILNVLDSCQSHVNANVLVSEEETKSPVEISSLERLELSPEVKDDTFIIEQPPVIPFDKPAPDIQILTPKAGSSKQDKSCVHNSDTGVNIIDMPSSATLGRKKRVNMSTEQIEKWLNESSLAKEESKVEMENVSSFHYETVEKPKVSSHHLSISSKAQHLGRPVNVTLAKLNDKKGKLSNLVVLNPQISSITHPNTLLVVKNKPVEIELKQPILVSKTQPVKLSKDSPNAEDSDAVSKSDQNSLDGSPDKKNFNKKILSQPRKLFLPKVKERKVATPSANAFSPENESSVYAFESDTEIPVSTPFRRKRKPASSLVKSQGEKGNKDNPNKDSNDTQSSELSGGENFKVPEAKKDTETQIISTKMNTIDLKSFANLANMQVLSLDKLTTNWSNVNCSASIAVQVNLDEQNQVQNSEVDESGQQKSIEISTQTEGSNDNDDDNDGQLFYIPLQAVTRNGSVQGHQLIQGVAVKLGTEGPTGPNQRVLLKAKLVTKPPLNVARVPPVGTVQPTARAPPIASTFSAENPMPSTSSAVSIPSTSEIRGVVVHKEENLNQVGNIQARETATNSTGTEKVVKSPKTPRERKISVDSGKPTKRLQGKSKQKILEICSPTNPTTFPEMKDPNEEARLVEAPTFHPTEKDFQDPLEYIDKIRPIAEKFGICRVVPPRNFKPECKVSDDMRFTAYNQYVHRMLHRWGPNVKEMMAIRKYLATQSITLSSPPWIGGMEIDLPHLYQTVQSLGGLKEVIEKKKWQKVSDGMKIPRSAQDRVTKLDDIYCKYLLPYDTLSQGERDKLFEEVESEWKKREAKAVQRLETQSNDNEEEEDEDSSDEIEECIVKGRNMPLNAFYRIARNTQRMWFSENQRSGNEAEGASASEVEAAFWKHVAEKKRHVCVHAASIDSSGRGFGFSVAKNSPCARHPWNLKVLTNNAGSVLRAMGPLTGVTVPTLHVGMLFSACCWYRDLHGLPWIEYLHTGAKKIWYGIPDEHNNNFRNALSKMVPRYCKNKTIWLPSDTAMVPPEMLVKNGVPLCQTVQEPGQFIIVFPKAFTSSICTGYVVSESVYFAQSSWLETAEQVFKDIHDSCEPSIFSFERLLFSLINDTRSHVDVLKQILPTVKKVCEREIYHRRQLKALGLTNTEKLPTPESGKRGKGKKVKEEDGDFECETCRTSLFVSLISNSLDDGMYCLPHGIQLLTKKKHLLKNCLLMIAYSENELDDLVHKLEDRIEAKSKKSNSHKQNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00200536;
90% Identity
-
80% Identity
-