Basic Information

Gene Symbol
JARID2
Assembly
GCA_035041075.1
Location
JAWWLR010000155.1:37496026-37534192[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 5.5e-22 6.2e-18 67.4 0.0 6 89 1397 1478 1393 1478 0.94

Sequence Information

Coding Sequence
ATGGATCCCGTCTCAGAATCACCGAAAAGaacaaaagttCACGCTCAAAGAAAATTCGCACAAGGAGCACCAACAAATTACAGTCCGGCCAGTACACCtgtcaaagaaaaagaaaaatctaagcCACCTGTTATCACTGAATTGATACCTCATAAGCGTCCAAACACAGAAGATTTCCTGACATTTCTTTGTTTTAGAGGAACTTCGATACTCCCGCCGagtttgaatttcttcaatatcaGTACAAAGAAAGAAAAGCCAGAGACGAAATCGACGAAAGCTTCCAGGCCTACTTCTTCCAGCTCGAAAGCAACACCTTCCGATTCCTCGAAATCCAACTCGCCTCAAAAGGCaactaaatcaaaaattaatgccCCTCTTAAAAAAGAATGTCCCAAGAGAGTCCAAAAGACAATTAAATTCAAGGCAAAGAACACAACAGCTCAAGCGCTGAAGAAAAAATATCTGGAGCAGCGGCTTGCCAAGCAGCGAATTAAAAGCAACGTCAAAGCAGCCTACGTTATAAGAACTCGGTCCTCCACAGAACAAAATGTAGGCAAGCATCTGCCTAAACTAGCTTCGAGAAATTTGGTATCAAAATCCGAATGTAAACGACGCGGTTTACGTAGTGGTGGTCTCGTCGAGAAAAGTCTCGCTCCTAAAACTGCTTCAAAAGTCAAGCGATCTCCGATGAAACCCAAGAAGAGAGTGCTCGCCAAGAGCAAAAGTAACTCATCTAATTCGGAATATTCCGATGACGAGGAGCTGAAATCTTCCCAAGGGAAGAAAGTAACGAAATCTCTACCTAAGAAGGTTTGCACGAGGAATAAATCGGATCTGAGAAGAGTGACGAGATCTTCCGTAGATACGAAAACCCCTCAACATCTTTCGCGAAGACCGACGAGGAAGACGAAAGAAGCCGCGGCTGTGTATATGGAAATCTTGGGCCGGAAACTAGTCAGTCCTGATTTGGAAAACGATGAGGATAATATTTCCCTTGATAGCTTTCCAGAATTGCCAAACGCTCGCAGGTCTTTGAAGGAGGAGAGCGAGATTAAGGCGAAAGTGAAACAGAATGCAAAGTTTGTTGCCAAAGAGAAGGAGAGTAAAGGAAGTCCTGTGAGTAGTAAAAAAGTCGAGAGGATCGAGAAGATCGAGAAGATCGAAAAGATCGAGAAGATCGAGAAGATCGAGAAGCTTCGGGCTGTGAAAACGGTTTTAAAGAGCAAAAGGCTTGTGAAGATTCACAAGTATTGTGAACTCGAGTCTGAAGAGGAGTCAGAGAGTTCGACCGATAGTGAGAAAAGTAGCGAAGCTAGGCCGATTACGAGGAGGAGTTTGAATAAGGTGAGTAAACCTGCAAATAGAAGTTTGAGGTCTTCTTCGAGGAATATTCCAGTGAAGGCGGAAGTCCAGAGTTCAGAGGTGAAGAAGGAAGTCAGAAAGGAGAAGGAGAAGATTGTGATCAAGAGGAAACGTGAGGTGCTTGAGAAAAAGAAAGAAGAGGGAAAGGAGGAAAGTAAAAAGGACGAGGAAACGAATGAGGAAAGAGTTAAGGAAGAGAGCAAAAAAGATGAAGGTGTTCAGGAAGATAGTAAAAAGGAGGATTTGAAAAGTGATAGCAAAAAGGATGAAACTACAAAGACTGATATTAAAAAGGAAGAGTCCGTGAAGGAAGAGACTAAAAAGGATGATACTAAAATAGGTGATACTAAAAAGGaggaaataaaaaggattaaaaaggaGGAAACTAAGAAGGAAGAAGTTAAAAAGACAGTTAAGAAAGAAGAATCCAGAAGTCAAAGTAAAAGTGATACTAAAAGTGAAACTAAAAGTGAAACTAAAAGCGaaattaaaactctaaataaGAAAGCTACTAAAACAGAGAGTCCTGATGTTGTTGAGAATGTAGAATCGGACGAGGAAACACTGGGTTCGCTTctcattaaaatgaaaaagaagaaagaaactgATTCTCTCAAAAAGACTGAGCAAACCAAGATCAAAGTTCTCCAAGAAGTTAAGGATCCAAAAATATCCGACGATGAAGAAGCGTTTAGAGGTTTTACAAAAAAGGCAATTTCGAGTGTTTTGGATTCGTGCCAGTCTCACGCGAATGCGAATCTCCTAATTTCCgaagaagaaataaaatcttcatttgaaacaccATCCCCTGAACAATTGGAATCACCTCCTGAGGTAAAGGATGATACTCTAATTATAGAGCAACCTTCAATTATTCCCACTGTCAAACCTGCTACTGAAATTAAAATCGTGACTCCGAAAGCTGATTCGTCGAAAGAGGATAagacttatgttaaaaaatctgaGAACGAGGTGAATATAATTGACATGCCATCGTCAGCGACTCTTGGAAGAAAGGAGAGAGTCAATATGTCGAATGAGCAGATAGAAAAGTGGCTGAGCGAGAGTTCATTTGCGAAAGAGGAGAGCAAAGTTGAAATGGAAAACGTGACTAATTTTCAGTACGAGACTGCTGAGAAACCGAAAGTCTCCACGCATCATTTATCCATTTCCTCCAAGATTCAACATTTAGTGAGGCCAGTGAATGTCactcttgcaaaattgaatgataaaaagGGCAAGCTCTCGAATTTGGTAGTTTTAGGCCCGCAAGTGAGTGCGATTAGACACCCGGGCTCTTTGCTGGTTGTGAAGAATCAACCAGTTGAAGTCGAGCCAAAACCGCCAATTTTGGTGAGCAAACCTCAACCTCCGAAGGTGAGCAAGGAATCTCCGAACGCAGAAGACAGTGATGCGGTTTCAAAATCCGACCAAAATTCTCTCGACGGTTCCCCGGACAAGAAGaatcttgaaaagaaaattctctCCCAACCgaggaaattatttttaccaaaggTAAAGGAGAGGAAGGTCGCAACTCCGAGTGCAAATGCTTTTTCCCCGGAGAATGAAAGTAGTGTTTATGCATTTGAAAGTGATACGGAAGTTCCGGTAAGCACTCCGTTCAGGAGAAAAAGCAAACCAGCTTCGCCTTTGGTAAAAGGACCCGATGAAAAAAGCACTAAAGATAATCCCAATAAGGATAGCAATGATACTCAGAGTTCTGAATTATCCGGAGGTGAGAATTTCAAAGTTCCTGAAGCGAAGAAAGAGACGGAAAGTCCGATAATTTCGACCAAGACGAACACGATTGATTTGAAGAATTTTGCTAATTTGGCTAACATGCAGGTTCTTTCTCTGGACAAGCTGACGACCAATTGGAGCAATGTTAATTGCAGTGCGTCTATTGCTGTCCAGGTGAATTTAGATGAACAGAATCAAGTTCAAAATTCAGAAGTTGACGAAAACGGACAGCTGAAGAGTACTGAAATATCGACGCAAACTGAGGGATCAAATGACAATGACGACGATAATGATGGACAGCTGTTTTATATTCCTTTGCAAGCGGTCACGAGGAATGGGTCGGTACAAGGTCATCAGCTGATACAAGGAGTGGCTGTTAAATTGGGAACGGAGGGACCAACTGGACCGAATCAGAGGGTTTTGTTGAAGGCTAAACTTGTGACGAAACCACCGTTGAATGTGGCCAGGGTGCCTCCGGTGGGAACTGTTCAACCGACTGCTAGAGCTCCGCCGATTGTTTCTACTTCCAGTGCAGATCATCCAATGCCGTCGACTTCATCGGCAGATCCTGTACCCTCGACTTCCGAAATTCGAGGTGTCGTAGTTCATAAAGAGGAGAATTTAAATCAGGGCGGAAATATTCGAACTAAGGAAACTGCTACGAGTTCAACTGGAGCTGAGAAGGCTGAAAAGGTTTTCAAGTCTCAGAAGACACCCAGGGAGAGGAAGGTTTCTATCGATTCCGGCAAACCTACCAAGAGGTCCCAAGGAAAGTCGAAGCAGAAAATTCTCGAGATCTGTTCACCAACAAACTCAACAACCTTCCCAGGAACAAAGGATCCAAACGAAGAGGCTCGTCTCGTAGAAGCTCCGACCTTTCACCCAACCGAGAAAGATTTTCAGGATCCTCTCGAGTACATCGATAAAATTCGACCAATCGCCGAAAAATTCGGTATCTGTCGTGTCGTTCCACCTGGAAACTTCAAGCCCGAGTGCAAAGTCTCCGACGATATGCGATTCACAGCTTACAATCAATACGTCCATCGAATGCTCCACAGATGGGGACCCAATGTCAAAGAAATGATGGCCATCAGAAAATACCTAGCCACCCAGAGTATAACCCTGAATCATCCGCCCTGGATCGGAGGAATGGAAATCGATCTTCCCCATTTGTACCAGACAGTCCAAAGCCTGGGTGGTTTGAAGGAAGTGATCGAGAAGAAAAAGTGGCAGAAGGTGTCAGACGGTATGAAAATTCCGAGATCGGCTCAAGATCGAGTCACCAAGCTGGACGATATCTACTGCAAGTATTTACTGCCATATGATACACTCTCCCAGGCGGAGCGGGACAAACTCTTCGAGGAAGTGGAGTCGGAATGGAAGACCCGGGAAGCCAAAGCATTGCGGAGATTGGAAGCTCAGTCGAATGATAACGGGGGGGAGGAGGAGGAGGACGAGGACAGTTCTGATGAAATTGAGGAGTGTATTGTCAAGGGAAGAAATATGCCTCTGAATGCCTTCTATCGAATCGCTAGAAACACCCAGAGAATGTGGTTCTCGGAGAATCAGAGATCGGGAAATGAGGCTGAAGGAGCGTCGGCTTCGGAAGTTGAGGCGGCTTTTTGGAAGCATGTGGCTGAGAAGAAGCGACATGTTTGTGTTCATGCTGCCAGTATTGATTCGAGCGGGAGGGGATTTGGATTCTCTGTTGCTAAGAATAGTCCTTGTGCGAGACATCCTTGGAATTTAAAGGTCCTGACTAATAATGCTGGGTCTGTGCTGCGAGCTATGGGTCCCTTGATGGgtgTGACCGTACCGACTCTACACGTTGGGATGCTTTTTAGTGCTTGCTGCTGGTATCGAGATCCGCATGGACTTCCTTGGATCGAATATTTGCACACTGGAGCGAAAAAAATTTGGTATGGGATTCCTGACGAGCACAGCAACAATTTCAGAAATGCTCTCTCGAAAATGGTGCCGcgttattgcaaaaataaaaaaatttggctgCCTTCTGATACTGCCATGGTGCCTCCGGAAATGCTCGTGAAAAACGGGGTTCCCTTGTGTCAAACGGTCCAGGAACCTGGACAATTTATCGTCGTTTTTCCTAAAGCTTTCACTTCGAGTATTTGCACTGGTTATGTCGTTTCGGAAAGCGTCTACTTTGCACAGTCCTCTTGGCTCGAAACTGCTGAACAAGTTTTTCAGgaTATACACAACAGTTGTGAACCATCAATATTTTCTTTCGAAAGATTGCTCTTCAGCCTTATCAATGACACAAGATCTCACGTCGAAATTCTGAAACagaTCTTGCCAACAGTGAAGAGAGTCTGTGAAAGGGAAATTGATTATCGCAGACAGCTGAAGAGTCTGGGGCTAACAAATACGGAAAAGTTGCCAACGCCGGAAAGTGGAAAACGAGGAAAGggcaaaaaagtgaaagaagaGGACGGTGATTTCGAGTGTGAAACTTGCCGGGCTAGTTTGTTTGTTTCTTTGGTTAGCAATTCACTGGACGATGGCATGTATTGCCTTCCTCATGGGATTCAGCTTTTGACAAGGAAAAAACATCTCTTGAAAACTTGCCTTCTAATGATCACGTACAGCGagAACGACCTGGACGATTTGATCCACAAATTGGAGGACAGGATCGAAGCAAAATCGAAGAAAAGCAATGCTTACAAACAGAATAAGTAG
Protein Sequence
MDPVSESPKRTKVHAQRKFAQGAPTNYSPASTPVKEKEKSKPPVITELIPHKRPNTEDFLTFLCFRGTSILPPSLNFFNISTKKEKPETKSTKASRPTSSSSKATPSDSSKSNSPQKATKSKINAPLKKECPKRVQKTIKFKAKNTTAQALKKKYLEQRLAKQRIKSNVKAAYVIRTRSSTEQNVGKHLPKLASRNLVSKSECKRRGLRSGGLVEKSLAPKTASKVKRSPMKPKKRVLAKSKSNSSNSEYSDDEELKSSQGKKVTKSLPKKVCTRNKSDLRRVTRSSVDTKTPQHLSRRPTRKTKEAAAVYMEILGRKLVSPDLENDEDNISLDSFPELPNARRSLKEESEIKAKVKQNAKFVAKEKESKGSPVSSKKVERIEKIEKIEKIEKIEKIEKLRAVKTVLKSKRLVKIHKYCELESEEESESSTDSEKSSEARPITRRSLNKVSKPANRSLRSSSRNIPVKAEVQSSEVKKEVRKEKEKIVIKRKREVLEKKKEEGKEESKKDEETNEERVKEESKKDEGVQEDSKKEDLKSDSKKDETTKTDIKKEESVKEETKKDDTKIGDTKKEEIKRIKKEETKKEEVKKTVKKEESRSQSKSDTKSETKSETKSEIKTLNKKATKTESPDVVENVESDEETLGSLLIKMKKKKETDSLKKTEQTKIKVLQEVKDPKISDDEEAFRGFTKKAISSVLDSCQSHANANLLISEEEIKSSFETPSPEQLESPPEVKDDTLIIEQPSIIPTVKPATEIKIVTPKADSSKEDKTYVKKSENEVNIIDMPSSATLGRKERVNMSNEQIEKWLSESSFAKEESKVEMENVTNFQYETAEKPKVSTHHLSISSKIQHLVRPVNVTLAKLNDKKGKLSNLVVLGPQVSAIRHPGSLLVVKNQPVEVEPKPPILVSKPQPPKVSKESPNAEDSDAVSKSDQNSLDGSPDKKNLEKKILSQPRKLFLPKVKERKVATPSANAFSPENESSVYAFESDTEVPVSTPFRRKSKPASPLVKGPDEKSTKDNPNKDSNDTQSSELSGGENFKVPEAKKETESPIISTKTNTIDLKNFANLANMQVLSLDKLTTNWSNVNCSASIAVQVNLDEQNQVQNSEVDENGQLKSTEISTQTEGSNDNDDDNDGQLFYIPLQAVTRNGSVQGHQLIQGVAVKLGTEGPTGPNQRVLLKAKLVTKPPLNVARVPPVGTVQPTARAPPIVSTSSADHPMPSTSSADPVPSTSEIRGVVVHKEENLNQGGNIRTKETATSSTGAEKAEKVFKSQKTPRERKVSIDSGKPTKRSQGKSKQKILEICSPTNSTTFPGTKDPNEEARLVEAPTFHPTEKDFQDPLEYIDKIRPIAEKFGICRVVPPGNFKPECKVSDDMRFTAYNQYVHRMLHRWGPNVKEMMAIRKYLATQSITLNHPPWIGGMEIDLPHLYQTVQSLGGLKEVIEKKKWQKVSDGMKIPRSAQDRVTKLDDIYCKYLLPYDTLSQAERDKLFEEVESEWKTREAKALRRLEAQSNDNGGEEEEDEDSSDEIEECIVKGRNMPLNAFYRIARNTQRMWFSENQRSGNEAEGASASEVEAAFWKHVAEKKRHVCVHAASIDSSGRGFGFSVAKNSPCARHPWNLKVLTNNAGSVLRAMGPLMGVTVPTLHVGMLFSACCWYRDPHGLPWIEYLHTGAKKIWYGIPDEHSNNFRNALSKMVPRYCKNKKIWLPSDTAMVPPEMLVKNGVPLCQTVQEPGQFIVVFPKAFTSSICTGYVVSESVYFAQSSWLETAEQVFQDIHNSCEPSIFSFERLLFSLINDTRSHVEILKQILPTVKRVCEREIDYRRQLKSLGLTNTEKLPTPESGKRGKGKKVKEEDGDFECETCRASLFVSLVSNSLDDGMYCLPHGIQLLTRKKHLLKTCLLMITYSENDLDDLIHKLEDRIEAKSKKSNAYKQNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00200536;
90% Identity
iTF_00200536;
80% Identity
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