Bbay013596.1
Basic Information
- Insect
- Bellardia bayeri
- Gene Symbol
- ZNF275
- Assembly
- GCA_950370525.1
- Location
- OX493266.1:9588889-9592678[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.8e-05 0.0047 18.1 0.3 1 23 188 210 188 210 0.97 2 15 0.00029 0.024 15.9 2.1 1 23 216 238 216 238 0.98 3 15 1.7e-06 0.00014 22.9 1.7 1 23 297 319 297 319 0.98 4 15 9.7e-06 0.00079 20.6 0.4 1 23 439 461 439 461 0.96 5 15 0.1 8.1 8.0 1.0 1 23 467 489 467 489 0.93 6 15 5.1e-06 0.00042 21.4 0.3 1 23 506 528 506 528 0.98 7 15 0.024 2 9.9 0.5 1 23 537 560 537 560 0.95 8 15 0.00084 0.068 14.5 4.9 1 23 566 588 566 588 0.98 9 15 0.00023 0.018 16.3 0.4 2 23 595 616 594 616 0.97 10 15 2.8e-08 2.3e-06 28.6 0.7 1 23 622 644 622 644 0.96 11 15 0.0023 0.19 13.1 1.3 1 23 650 672 650 672 0.98 12 15 5.1e-05 0.0041 18.3 1.6 1 23 678 700 678 700 0.96 13 15 4.2e-05 0.0034 18.6 3.2 1 23 706 728 706 728 0.99 14 15 2.7e-06 0.00022 22.3 0.7 1 23 734 756 734 756 0.99 15 15 6.5e-05 0.0053 18.0 0.4 1 23 762 784 762 784 0.97
Sequence Information
- Coding Sequence
- ATGTCTGGTGATTTACTGGAAAAATGTCGCACTTGTTTAAGTGCTGCCCACAATTACCATCAACTATTCGATTATGTGgatgaaaattacaaaatcctAGAAATGTTGGATGGTATAGTGCCCCAGATAGATATCAAGACCTCTGCGCAATTTTCCACTTTGGTGTGTCAGCCGTGTGTGGATAAATTGCTGACCGGCTATAAATTTCAACAGTTGTGCATAGAAACCAATAATCGACTGCATGATCTGCTGAGCATTTCTGTGTTTGATACAGAGCCAAAGTTGGAGAAAATCTTGGATCCTTTGACGGGCGAGTCGAGTTTTAAGATGAAACAGGAGATTGAAGAAGATGCTTGTTTCGAGTGTGAAATACAACCGGACGAACTTGAGGGGCCAATAGCATCGGATAATGATAATGATTTGGGACCGGGAGGAGGTGGAAGTGACACAGATTCGAGCAATGAAAAACTATCGGTTTTAAAAGAAAGATCAGCCCAAAAATCATCTTTGAAGGTTGAACATTTTGAAAAGCCTAGAAAACTAAATCGTTTTAAGGGCAGCTTTCCTTGCTCAGAATGTGGTAAAGAGTTTAGTAGTTTAAATCGCCTGAAACAACATACAGCCATACATGAGAAAAAGCGGGCTTATCCATGTGAAATTTGCCACACAAATTTTATGAGTGAGAAAACTTTTAAAGTTCATATGTTAACACACACAAATGGTGATGTTGCTACCAACCAGAATGATGCAGCAGAGCAAACTAACAGTATTGAAAATAATGACAGtaaaagtatattaaaaaaccaaGATTTGGACGAAAATAAATCAGCGGAAAAGAAAACTGATAATGAAAAAGTAGATGATATAGATTCAAAGGATGTTCTAACATTTAAATGTCCCGACTGTCCGAAATGTTTTGAGAAGAAAGCTTCCCTGTCGGCGCACTATAAAGTGCACAAGAAAAAGGTTTTCATTAAgaataataaatgcaaaaagttggATCCTGAAATTGTAGAAGAGGACCAGGATGTTAATAATTCATTGGGGGAGAGTGTAAATAATGCTGAGGAGAAAATATCTAAAGTTATGGTAAAGGAGGAAATTGAAATCACTCCACAAATATTTGAAGAACCCATGGATGGAGATTTTGAGGCCAGCGCTGAATGGTTTAACAATGATGAGGATTCAGATGATAATTCGGAAAAGGATTTGTTTGGCAAACAGGAaacaaaagaaactaaaaatattgattttgtagATACCGGCATAGGGGAAATAGAAAAGCCCAATAGCAGCAATAAACGCAGTGGCAGTTTCCCTTGTGAGATGTGTGGCAAAGTATTCGATCGTCCATATCGCCTGAAACGCCACAGTTCCGTACATTCACTGACACGTCCCCATGAATGTGAAATCTGTAAATATCGTTTTGCCACCGTTAATATCCTAAAAGCTCATTTGTTTCAGCATGAAAATGAAACGGGTGGAAATTTTAATTCGCAATCACGTCCAGAAGGCTTTAAATGTCCCGACTGTCCCAGACGTTTTGAAAAACAAGCCTCACTCTCAGCCCATCGTCAAATACACACACGAAATGCCTCGGAAGCCAACTATCCTTGTATGGTGTGCCAGCGTAATTTCATGTCCGTGCGCTCCCTAACCGAACACATCACAAACAAACATCCCGAAGTGGAGAAACACAAATGTGATCAGTGTGATAAAACGTTTGTTTTACACGCCCATCTGGTGGAACATTTAAACCGGCATAAAGGCAACAAAAATCTAGTGTGTCTCATATGTGAGAAAGAATTTGGTTATACGAATACTTTGAAAGAGCATATGCGCACACACAGTGGTGAAAGTCCTTATCTGTGTCCCCAGTGTGGTAAAACATTTCGCAGTGCGAGTAATTTACGCCAGCATATGGAAAGGCATACGGGTTTAAAGAAATACCAATGTCCAGAGTGTCCCAGTCGCTTCAACTGTAGATCAGATCTAATAAAACATGCATCAACACATTCAAATGCTAAGCCTCATGTCTGTGATATTTGTGGTTCTCGTTTTACGAGAGCGTATTCATTGCAAAAACACAAGCTGTTACATTCGGGAGAAAGACCATTCAAGTGTGATCAGTGCAGTATGACATTTGCTATAATTTATCACTTACGGCGCCACATGCGCACCCATACCGGTGAAAAACCTTACAAATGCAAATACTGTGAACGTGCTTATGCCGAAAGTGGAGATTTAACTAAACACTTGAGAACGCATGTAGGTGAGAACACCTATATGTGTGATCAATGTCCAATGGCCTTTAAATATCAAGCAGAATTAAGGCAACATCAATCGCAACATTATAAAATGGCCCAAAAGCTGCTGCAACAAGCTCAAAAAATGTCCGAAGAAGCACAACAACATGAAATAAGCGGACAAACAGAGCAGCAGCATTTACAGCAACCGCCACAACAACTTGAGCAACATCAAACACAGCAACCGTTAACCATACCagaacatcaacaacaacatcaacataatcaacaattattaaaaaccgATCAAATACAACATTTACCCATAGGCATACCGAGTTATCAGCAAATACCCTTAATAGATCATAGACAACAACTAAACACAATAGTGGAACAGCATCATGCAAAAATTGAAGATGTTGTTGTAGCACGACATCAACAACAAGACAACTTAGATATAAAGAATCTCAGtaattaa
- Protein Sequence
- MSGDLLEKCRTCLSAAHNYHQLFDYVDENYKILEMLDGIVPQIDIKTSAQFSTLVCQPCVDKLLTGYKFQQLCIETNNRLHDLLSISVFDTEPKLEKILDPLTGESSFKMKQEIEEDACFECEIQPDELEGPIASDNDNDLGPGGGGSDTDSSNEKLSVLKERSAQKSSLKVEHFEKPRKLNRFKGSFPCSECGKEFSSLNRLKQHTAIHEKKRAYPCEICHTNFMSEKTFKVHMLTHTNGDVATNQNDAAEQTNSIENNDSKSILKNQDLDENKSAEKKTDNEKVDDIDSKDVLTFKCPDCPKCFEKKASLSAHYKVHKKKVFIKNNKCKKLDPEIVEEDQDVNNSLGESVNNAEEKISKVMVKEEIEITPQIFEEPMDGDFEASAEWFNNDEDSDDNSEKDLFGKQETKETKNIDFVDTGIGEIEKPNSSNKRSGSFPCEMCGKVFDRPYRLKRHSSVHSLTRPHECEICKYRFATVNILKAHLFQHENETGGNFNSQSRPEGFKCPDCPRRFEKQASLSAHRQIHTRNASEANYPCMVCQRNFMSVRSLTEHITNKHPEVEKHKCDQCDKTFVLHAHLVEHLNRHKGNKNLVCLICEKEFGYTNTLKEHMRTHSGESPYLCPQCGKTFRSASNLRQHMERHTGLKKYQCPECPSRFNCRSDLIKHASTHSNAKPHVCDICGSRFTRAYSLQKHKLLHSGERPFKCDQCSMTFAIIYHLRRHMRTHTGEKPYKCKYCERAYAESGDLTKHLRTHVGENTYMCDQCPMAFKYQAELRQHQSQHYKMAQKLLQQAQKMSEEAQQHEISGQTEQQHLQQPPQQLEQHQTQQPLTIPEHQQQHQHNQQLLKTDQIQHLPIGIPSYQQIPLIDHRQQLNTIVEQHHAKIEDVVVARHQQQDNLDIKNLSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00045475; iTF_00259938; iTF_00922267; iTF_00259071;
- 90% Identity
- iTF_00259938; iTF_00045475; iTF_00259071;
- 80% Identity
- -