Lser008431.1
Basic Information
- Insect
- Lucilia sericata
- Gene Symbol
- ZNF275
- Assembly
- GCA_015586225.1
- Location
- NW:45469-49473[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00048 0.022 14.9 0.3 1 23 194 216 194 216 0.94 2 15 1.2e-05 0.00055 19.9 0.9 1 23 222 244 222 244 0.99 3 15 2.1e-06 0.0001 22.3 0.7 1 23 301 323 301 323 0.98 4 15 7.4e-06 0.00035 20.6 0.4 1 23 444 466 444 466 0.96 5 15 0.076 3.6 7.9 1.0 1 23 472 494 472 494 0.93 6 15 3.9e-06 0.00018 21.4 0.3 1 23 511 533 511 533 0.98 7 15 0.019 0.87 9.9 0.5 1 23 542 565 542 565 0.95 8 15 0.00064 0.03 14.5 4.9 1 23 571 593 571 593 0.98 9 15 0.00017 0.0081 16.3 0.4 2 23 600 621 599 621 0.97 10 15 2.1e-08 9.9e-07 28.6 0.7 1 23 627 649 627 649 0.96 11 15 0.0018 0.083 13.1 1.3 1 23 655 677 655 677 0.98 12 15 3.9e-05 0.0018 18.3 1.6 1 23 683 705 683 705 0.96 13 15 3.2e-05 0.0015 18.6 3.2 1 23 711 733 711 733 0.99 14 15 2.1e-06 9.7e-05 22.3 0.7 1 23 739 761 739 761 0.99 15 15 5e-05 0.0023 18.0 0.4 1 23 767 789 767 789 0.97
Sequence Information
- Coding Sequence
- atgtctAGTGATTTGTCGGCAAAGTGCCGAACTTGTCTAAGTTCTGCCCATCATTATCATCAATTGTTCGACTATGTGGAGGAGAATTACAAAATCCTAGAAATGTTAGATGGTATAGTGCCCCAAATAGATATTAAGACCACCTCACAATTTTCCACCTTAGTGTGTCAGACCTGTGTGGACAAATTATTGACGGGctataaatttcaacaattgtGCATTGAGACTAATAATCGTCTGCATGATTTGCTGGGCATTGCTGTTTTTGAGACGCAGCCAAAATTGGAGAAAATCCTGGATCCTTTGACGGGTGAGTCAAGTTTTAAGATGAAACAAGAGCTAGAGGAGGATGCTTGTTTTGAATGTGAAATACAACCGGATGAATTGGAGGGTAACATAGCATCGGATAATGATAATGATTGGGGGCCGGAAGGTGGAgatgatggtggtggtggtggtagtgATACAGATTCTAGCAATGAAAAGCTCTCAGTTTTAAAGGAAagatcttccaaaaaatcaccTTTAAAATTGGAACCTTTTGAAAAACCTGGAAAACTAAATCGACTTAAAGGCAGTTTTCCCTGCTCAGAATGTGGTAAAGAGTTTAGCAGTGTAAATCGCCTAAAGCAACATAACGCCATACATGAGAAAAAACGTGGCTATTCATGTGAAATCTGCAATACTCGCTTTACGCtagagaaaactttaaaagctcATATGTTGACACACGCCAATGGTGATATAAAGGCAGCTGACAAAAATGACAGTATTGAAAATAAGGATAATAAAGAGATATCTGAAACCGAAGAGTTTTTAGAGGAAACAAAAACCACTGAAGTTGAAAAGCGGAATACTAATGCAGAAGAAAAGTATTTAGATACGAAGCATATGCTAACATTTAAATGTCCTGATTGTCCTAAAAGTTTTGAGAAGAAAGCCTCCTTCTCAGCGCATTATAAAGTGCATAAGAAAaaggattttattaaaaacaataaatgtaAAAAGGTTGAGACTAGTTTAGAGGAAGCTGAAGAGGAATATCCTGTACAGGATTTAGAAGAGGGCACCAGCAATAATGTAGATAAAATAGCTAAGGTGGTGGTAAAGGAAGAAATCGAAATTACACCACAAATCTTTGAAGAACCCATGGATGATTTTGATGCTCAAGGTGAATGGTTTAATAATGATTATGAGGATTCAGATGACAATTCGGAAAAGGATCTTTTTGCTAAGCAGGAGccaaaagaaactaaaaatattgattttgtggATACCGGCATAGGGGAAATAGAAAAGCCCAATAGCAGCAATAAAAGAAGCGGCAACTTTCCCTGTGAAATGTGCGGCAAAGTATTCGATCGTCCTTATCGTTTGAAACGTCACAGTTCTGTACATTCTCTGACCAGACCACATGAATGTGAAATTTGTAAATATCGTTTTGCCACCGTTAATATCCTAAAAGCTCATCTGTTTCAGCATGAAAATGAAACACAAGGAAATTTCAACTCCCAATCACGTCCAGAAGGCTTTAAGTGTCCCGATTGTCCTAGACGTTTTGAGAAACAAGCCTCTTTATCTGCTCATCGTCAAATACACACACGCAATGCCTCCGAAGCCAACTATCCCTGTATGGTTTGCCAGCGTAATTTTATGTCCGTTAGATCCTTAACCGAACATATCACTAACAAACATCCCGAGGTGGAAAAACACAAGTGTGATCAATGtgataaaacttttgttttacaTGCCCATCTGGTGGAACATTTAAATCGCCACAAAGGCAATAAGAATCTAGTGTGTCTGATATGTGAAAAGGAGTTTGGTTACACTAATACATTGAAAGAACACATGCGCACCCATAGCGGTGAGAGTCCTTATTTGTGTCCCCAATGTGGTAAAACATTCCGCAGTGCGAGTAATTTACGCCAACATATGGAAAGGCATACGGGTCTGAAGAAATACCAGTGTCCAGAGTGTCCCAGCCGTTTTAACTGTAGATCAGATTTGATAAAACATGCTTCGACACATTCAAATGCTAAGCCTCATGTCTGTGATATATGCGGATCACGTTTTACGAGAGCTTATTCCCTGCAGAAACATAAGCTGCTGCATTCGGGAGAGAGACCGTTTAAGTGTGATCAGTGCAGTATGACATTTGCAATAATTTATCATCTCCGTCGTCACATGCGCACTCATACGGGTGAGAAACCCTATAAATGTAAATACTGTGAACGTGCTTATGCCGAAAGTGGAGATTTAACAAAACACTTGAGAACCCATGTAGGCGAAAACACCTACATGTGTGATCAATGTCCCATGGCCTTTAAATATCAAGCGGAATTAAGGCAACATCAATCTCAGCATTATAAAATGGCGCAAAAACTTTTGCAGCAGGCACAAAAAATGTCCGAAGAAGCACAACAACATGAAGCAAACGAACAAATAACTACACCACAGCAAGAGCAAGAGCAAGAGAAACAGCAATTAACACCAACACAACAGCAACCAGCACAGCCACTATTATCATTACaagaacaacagcagcaacataatcaaatgaaaaatgaacaaatacataatttaccCATGGGAATACCCAGTTATCAACACCACTTGCCCTTAATAGATCATAATAACATGGTGGAACAAACAAAACTGGAAGATGTTGTAGCaaggcaacaacaacagcatcaacAAGACAATTTAGATTTAAAGAATCTcagtaattaa
- Protein Sequence
- MSSDLSAKCRTCLSSAHHYHQLFDYVEENYKILEMLDGIVPQIDIKTTSQFSTLVCQTCVDKLLTGYKFQQLCIETNNRLHDLLGIAVFETQPKLEKILDPLTGESSFKMKQELEEDACFECEIQPDELEGNIASDNDNDWGPEGGDDGGGGGSDTDSSNEKLSVLKERSSKKSPLKLEPFEKPGKLNRLKGSFPCSECGKEFSSVNRLKQHNAIHEKKRGYSCEICNTRFTLEKTLKAHMLTHANGDIKAADKNDSIENKDNKEISETEEFLEETKTTEVEKRNTNAEEKYLDTKHMLTFKCPDCPKSFEKKASFSAHYKVHKKKDFIKNNKCKKVETSLEEAEEEYPVQDLEEGTSNNVDKIAKVVVKEEIEITPQIFEEPMDDFDAQGEWFNNDYEDSDDNSEKDLFAKQEPKETKNIDFVDTGIGEIEKPNSSNKRSGNFPCEMCGKVFDRPYRLKRHSSVHSLTRPHECEICKYRFATVNILKAHLFQHENETQGNFNSQSRPEGFKCPDCPRRFEKQASLSAHRQIHTRNASEANYPCMVCQRNFMSVRSLTEHITNKHPEVEKHKCDQCDKTFVLHAHLVEHLNRHKGNKNLVCLICEKEFGYTNTLKEHMRTHSGESPYLCPQCGKTFRSASNLRQHMERHTGLKKYQCPECPSRFNCRSDLIKHASTHSNAKPHVCDICGSRFTRAYSLQKHKLLHSGERPFKCDQCSMTFAIIYHLRRHMRTHTGEKPYKCKYCERAYAESGDLTKHLRTHVGENTYMCDQCPMAFKYQAELRQHQSQHYKMAQKLLQQAQKMSEEAQQHEANEQITTPQQEQEQEKQQLTPTQQQPAQPLLSLQEQQQQHNQMKNEQIHNLPMGIPSYQHHLPLIDHNNMVEQTKLEDVVARQQQQHQQDNLDLKNLSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00200049;
- 90% Identity
- -
- 80% Identity
- -