Agra007176.1
Basic Information
- Insect
- Aldrichina grahami
- Gene Symbol
- ZNF275
- Assembly
- None
- Location
- Contig212:85923-89685[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.7e-05 0.00068 19.5 0.4 1 23 188 210 188 210 0.97 2 15 0.00013 0.0054 16.7 2.6 1 23 216 238 216 238 0.99 3 15 1.3e-06 5.4e-05 22.9 1.7 1 23 299 321 299 321 0.98 4 15 7.5e-06 0.00031 20.6 0.4 1 23 443 465 443 465 0.96 5 15 0.077 3.1 7.9 1.0 1 23 471 493 471 493 0.93 6 15 4e-06 0.00016 21.4 0.3 1 23 510 532 510 532 0.98 7 15 0.019 0.77 9.9 0.5 1 23 541 564 541 564 0.95 8 15 0.00065 0.026 14.5 4.9 1 23 570 592 570 592 0.98 9 15 0.00018 0.0072 16.3 0.4 2 23 599 620 598 620 0.97 10 15 2.1e-08 8.8e-07 28.6 0.7 1 23 626 648 626 648 0.96 11 15 0.0018 0.073 13.1 1.3 1 23 654 676 654 676 0.98 12 15 3.9e-05 0.0016 18.3 1.6 1 23 682 704 682 704 0.96 13 15 3.3e-05 0.0013 18.6 3.2 1 23 710 732 710 732 0.99 14 15 2.1e-06 8.5e-05 22.3 0.7 1 23 738 760 738 760 0.99 15 15 5e-05 0.002 18.0 0.4 1 23 766 788 766 788 0.97
Sequence Information
- Coding Sequence
- ATGTCTAGTGATTTATTGTCCAAATGTCGCACCTGCTTAAGTGCTGGTCACAATTACCATCAATTGTTCGATTATGTGGAGGAAAATTATAAAATCCTAGAAATGTTGGATGGTATAGTGCCCCAGATAGATATTAAGACTTCTTCGCAATTTTCCTCATTGGTGTGCCAGCCGTGTGTGGACAAATTGCTGACGGGCTATAAATTTCAACAGTTGTGCATAGAAACCAATAATCGACTGCATGATTTGCTAAGAATTGCAGTCTTTGAGACAGAGCCAAAGTTGGAGAAAATTTTGGATCCTTTGACGGGTGATTCGAGTTTTAAGATGAAACAGGAAATTGAAGAAGATGCCGGTTTTGAATGTGAAATACAACCGGATGATCTGGAGGGGCCCATAGCGTCGGATAATGATAATGACTGGGGGCCGGGCGGAGGAGGAAGTGATACAGATTCAAGCAATGAAAAACTATCAGTTTTAAAACAACGGTCTGCCAAAAAATCACCTTTAAAAGTTGAACATTTTGAAAAGCCTAGAAAACTGAATCGTTTTAAAGGCAGCTTTCCTTGCTCGGAATGTGGAAAAGAGTTTAGTAGTTCAAATCGCCTGAAACAACATACAGCTATACATGAGAAAAAGCGGGCTTATTCATGTAAAATTTGCCACACAAGTTTTATCGGTGAGAAAACTTTTAAAGTTCATATGTTAACTCACGCAAATGGAGAGTTGGCTACCAATGAGGAAGGTGCTGACGAGCAAAATAACAGTATTGAAAATAATGACAGTAAAAATGTATTTGTGACACAAGAGTTTATTGAGAAAACTAAAGCAACTGAAGAGAAAGTAGCTGATAATGAAAAAGACGATTGTATAGATTCAAAGGATATGCTAACATTTAAATGTCCCGACTGTCCGAAATGTTTTGAGAAAAAAGCCTCCCTGTCGGCCCACTATAAAGTGCACAAGAAAAAGGATTTTATTAAAAATAATAAATGCAAAAAGGTTGATCCAGAAATGTTCGAAGAACAAGAGGAAAATGTCTGCAATATTGTAGGGGAGAATGCAAATAATGCTGAGGATAAAGTAACTAATGTTATGGTAAAAGAGGAAATTGAAATCACACCACAAATTTTTGAAGAACCCATGGATGGAGATTTTGAGGCCAGCGCTGAATGGTTTAATAATGATTATGAGGATTCAGATGATAATTCGGAAAAGGATTTATTTGGCAAACATGAAACAAAAGAAACTAAAAATATTGATTTTGTGGACACCGGCATAGGGGAAATAGAAAAGCCCAATAGCAGCAACAAACGAAGTGGAAGTTTCCCTTGTGAGATGTGTGGCAAAGTATTCGATCGACCTTATCGCCTGAAACGTCACAGTTCCGTACATTCTCTGACAAGGCCACATGAATGTGAAATCTGTAAATATCGTTTTGCCACCGTTAATATCCTAAAAGCCCATTTGTTTCAGCATGAAAACGAAACGGGGGGAAATTTTAACTCACAATCACGTCCAGAGGGCTTCAAATGTCCCGATTGTCCCCGACGTTTTGAAAAACAAGCCTCACTCTCAGCTCATCGTCAAATACACACACGCAATGCCTCGGAAGCCAACTATCCCTGTATGGTATGCCAGCGTAATTTTATGTCCGTGAGATCCTTAACGGAACACATCACCAACAAACATCCCGAGGTGGAAAAACACAAATGTGATCAGTGTGATAAAACGTTTGTTTTACATGCCCATCTGGTGGAACATTTAAACCGGCACAAAGGCAACAAAAATCTGGTGTGTCTCATATGTGAGAAAGAATTTGGTTATACCAATACGTTGAAGGAACATATGCGCACACACAGTGGTGAAAGTCCTTACCTGTGTCCTCAGTGTGGCAAAACATTCCGCAGTGCTAGTAATTTACGGCAGCATATGGAACGGCATACGGGTTTGAAAAAATACCAGTGTCCCGAGTGTCCCAGTCGCTTCAACTGTAGATCGGATTTAATAAAACATGCATCAACACATTCGAATGCTAAGCCTCATGTCTGTGATATTTGTGGTTCTCGTTTTACGAGAGCATATTCATTGCAAAAACACAAGCTGTTACATTCGGGAGAGAGACCATTCAAGTGTGATCAATGCAGTATGACTTTTGCTATAATTTATCATTTACGACGCCACATGCGCACCCATACCGGTGAGAAACCCTACAAATGCAAATACTGTGAACGAGCTTATGCCGAAAGTGGAGATTTAACTAAACACTTGCGAACGCACGTCGGTGAGAACACCTATATGTGTGATCAATGCCCAATGGCCTTTAAATATCAAGCTGAATTAAGACAACATCAATCTCAACATTATAAAATGGCTCAAAAGCTGTTGCAACAAGCTCAAAAAATGTCCGAAGAAGCACAACAACATGAAATAACCGAACAAACACAGCCAGATCAACAGCATTTGCAACAAACGCTACCACAACAACATGAGCAGCATCAACATATACAAGAACATCAACAACAGCAACATAATCAACAATTATTGAAAACCGATCAAATACAACATTTGCCCATAGGTATAACGAGTTATCAGCAACTACCCTTAATAGATCATAGACAGCAACTAAACACCATAGTGGAACAACAACAGCATCATGCAAAAATTGAAGATGTTGTTGTAGCGCGACAACAGCAACAAGACAATTTAGATATAAATAATCTCAGTAATTAA
- Protein Sequence
- MSSDLLSKCRTCLSAGHNYHQLFDYVEENYKILEMLDGIVPQIDIKTSSQFSSLVCQPCVDKLLTGYKFQQLCIETNNRLHDLLRIAVFETEPKLEKILDPLTGDSSFKMKQEIEEDAGFECEIQPDDLEGPIASDNDNDWGPGGGGSDTDSSNEKLSVLKQRSAKKSPLKVEHFEKPRKLNRFKGSFPCSECGKEFSSSNRLKQHTAIHEKKRAYSCKICHTSFIGEKTFKVHMLTHANGELATNEEGADEQNNSIENNDSKNVFVTQEFIEKTKATEEKVADNEKDDCIDSKDMLTFKCPDCPKCFEKKASLSAHYKVHKKKDFIKNNKCKKVDPEMFEEQEENVCNIVGENANNAEDKVTNVMVKEEIEITPQIFEEPMDGDFEASAEWFNNDYEDSDDNSEKDLFGKHETKETKNIDFVDTGIGEIEKPNSSNKRSGSFPCEMCGKVFDRPYRLKRHSSVHSLTRPHECEICKYRFATVNILKAHLFQHENETGGNFNSQSRPEGFKCPDCPRRFEKQASLSAHRQIHTRNASEANYPCMVCQRNFMSVRSLTEHITNKHPEVEKHKCDQCDKTFVLHAHLVEHLNRHKGNKNLVCLICEKEFGYTNTLKEHMRTHSGESPYLCPQCGKTFRSASNLRQHMERHTGLKKYQCPECPSRFNCRSDLIKHASTHSNAKPHVCDICGSRFTRAYSLQKHKLLHSGERPFKCDQCSMTFAIIYHLRRHMRTHTGEKPYKCKYCERAYAESGDLTKHLRTHVGENTYMCDQCPMAFKYQAELRQHQSQHYKMAQKLLQQAQKMSEEAQQHEITEQTQPDQQHLQQTLPQQHEQHQHIQEHQQQQHNQQLLKTDQIQHLPIGITSYQQLPLIDHRQQLNTIVEQQQHHAKIEDVVVARQQQQDNLDINNLSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00200049;
- 90% Identity
- iTF_00200049;
- 80% Identity
- -