Cvic026246.1
Basic Information
- Insect
- Calliphora vicina
- Gene Symbol
- ZNF275
- Assembly
- GCA_958450345.1
- Location
- OY288235.1:117387133-117390583[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.9e-05 0.0052 18.1 0.3 1 23 191 213 191 213 0.97 2 15 0.00058 0.051 15.0 1.6 1 23 219 241 219 241 0.98 3 15 1.8e-06 0.00015 22.9 1.7 1 23 302 324 302 324 0.98 4 15 9.9e-06 0.00087 20.6 0.4 1 23 446 468 446 468 0.96 5 15 0.1 8.9 7.9 1.0 1 23 474 496 474 496 0.93 6 15 5.2e-06 0.00046 21.4 0.3 1 23 513 535 513 535 0.98 7 15 0.025 2.2 9.9 0.5 1 23 544 567 544 567 0.95 8 15 0.00085 0.074 14.5 4.9 1 23 573 595 573 595 0.98 9 15 0.00023 0.02 16.3 0.4 2 23 602 623 601 623 0.97 10 15 2.8e-08 2.5e-06 28.6 0.7 1 23 629 651 629 651 0.96 11 15 0.0024 0.21 13.1 1.3 1 23 657 679 657 679 0.98 12 15 5.2e-05 0.0045 18.3 1.6 1 23 685 707 685 707 0.96 13 15 4.3e-05 0.0038 18.6 3.2 1 23 713 735 713 735 0.99 14 15 2.8e-06 0.00024 22.3 0.7 1 23 741 763 741 763 0.99 15 15 6.6e-05 0.0058 18.0 0.4 1 23 769 791 769 791 0.97
Sequence Information
- Coding Sequence
- atgtctAGTGATTTATTGTCCAAATGTCGCACCTGCCTAAGTGCTGGCCACAACAATTACCATCAATTGTTCGATTATGTggaggaaaattataaaatcctaGAAATGTTGGATGGTATAGTGCCCCAGATAGATATTAAGACCACTTCGCAATTTTCCTCATTGGTGTGCCAGCCGTGTGTGGATAAATTGCTGACGGGCTATAAGTTTCAACAATTGTGCATAGAAACCAATAATCGGCTGCATGATTTGCTGGGCATTGCTGTCTTCGAGACAGAGCCAAAGTTGGAGAAAATCTTGGATCCTTTGACGGGCGATGGCGATACGAGTTTTAAGATGAAACAGGAAATTGAAGAAGATGCTTGTTTTGAATGTGAAATACAACCGGATGAGATGGAGGGCCCCATAGCGTCGGATAATGATAATGACTGGGGACCGGGTGGAGGAGGAAGTGATTCAGATTCAAGCAATGAAAAACTATCAGTTTTAAAACAACGGTCTGCCAAAAAATCACCTTTAAAAGTTGAACATTTTGAAAAGCCTAGAAAACTGAATCGTTTTAAAGGCAGCTTTCCTTGCTCGGAATGTGGCAAagagtttagtagtttaaatcGCCTGAAACAACATACAGCTATACATGAGAAAAAGCGGGcttattcatgtaaaatttgtcaCACAAGTTTTATTGGTGAGAAACCGTTTAAAGTTCATATGTTAACTCACACAAATGGTGAGGTGGCTAACAACGAGGAAGGTGCTGGCGAGCAAACTAACAGTATTGAAAATAATGACAGTAAAAATGAATTTGAGTCCCAAGAGTTTATTGAGGAAACTACAGCAACTGAAAAGAATGTAGCTGATAATGAAAAAGAAGAATGTATAGATTCAAAGGATATGCTAACATTTAAATGTCCCGACTGTCCGAAATGTTTTGAGAAAAAAGCTTCCCTGTCGGCTCACTATAAAGTGCACAAGAAaaaggattttattaaaaataataaatgcaaaaaGATTGAGCCAGAAATGTTAGAAAAAGAAGATGAAAATGTCTGCAATATTGTGGGGGAGGATGCAAATAATGTTGATGATAAAGTAACTAAAGTTATGGTAAAAGAGGAAATTGAAATCACACCACAAATTTTTGAAGAACCCATGGATGGAGATTTTGAGGCCAGCGCTGAATGGTTTAATAATGATTATGAGGATTCAGATGACAATTCGGATAAGGATTTGTTTGGCAAGCATGAaacaaaagaaactaaaaatattgattttgtggACACCGGCATAGGGGAAATTGAAAAGCCCAATAGCAGCAATAAACGAAGTGGCAGTTTCCCTTGTGAGATGTGTGGCAAAGTATTCGATCGACCTTATCGCCTGAAACGTCACAGTTCCGTGCATTCTCTGACAAGACCACACGAATGTGAAATCTGTAAATATCGTTTTGCCACCGTTAATATCCTAAAAGCCCATTTGTTTCAGCATGAAAACGAAACAGGTGGCAATTTTAACTCACAATCACGTCCAGAAGGCTTCAAATGTCCCGATTGCCCACGACGTTTTGAAAAACAAGCCTCACTCTCAGCCCATCGTCAGATACACACACGTAATGCCTCGGAAGCCAACTATCCCTGTATGGTATGCCAGCGCAATTTTATGTCCGTACGGTCCTTAACCGAACACATCACCAACAAACATCCCGAGGTGGAGAAACACAAATGTGATCAGTGTgataaaacgtttgttttgcaTGCCCATCTGGTGGAACATTTAAACCGGCACAAAGGCAACAAAAATCTGGTGTGTCTCATATGTGAGAAAGAATTTGGCTATACGAATACGTTGAAGGAACACATGCGCACACACAGTGGCGAAAGTCCTTATCTATGTCCTCAGTGTGGCAAAACATTCCGCAGTGCGAGTAATTTACGGCAGCATATGGAAAGGCATACGGGTTTGAAAAAATACCAGTGTCCAGAGTGTCCCAGTCGCTTCAACTGTAGATCGGATCTAATAAAACATGCATCAACACATTCGAACGCTAAGCCTCATGTCTGTGATATTTGTGGTTCTCGTTTTACGAGAGCATATTCATTGCAAAAACATAAGCTATTACATTCGGGAGAGAGACCATTCAAGTGTGATCAATGCAGTATGACTTTTGCTATAATTTATCACTTACGACGCCACATGCGCACCCATACCGGTGAGAAACCCTACAAATGCAAATACTGTGAACGAGCTTATGCCGAAAGTGGAGATTTAACTAAACACTTGCGAACGCATGTTGGTGAAAACACCTATATGTGCGATCAATGTCCAATGGCCTTTAAATATCAAGCTGAATTGAGGCAACATCAATCTCAACATTATAAAATGGCCCAAAAGCTGTTGCAACAAGCCCAAAAAATGTCCGAAGAAGCACAACAACATGAAATAACCGAACAAACACAGCCAGATCAACAGCATTTGCAGCAAACGCAACCACAACAACATGAGCAGCATCAACCTATACAAGAACACCAACATAATCAACAATTATTGAAAACCGatcaaatacaacatttacccATAGGTATAACGAGTTATCAGCAAATACCCTTAATAGATCATAGACAGCAACTAAACACCATAGTGGAACAACAGCAGCATCATGCAAAAATTGAAGATGTTGCTGTAGCACGACAACAGCAACAAGACAATTTAGATATAAATAATCTCagtaattaa
- Protein Sequence
- MSSDLLSKCRTCLSAGHNNYHQLFDYVEENYKILEMLDGIVPQIDIKTTSQFSSLVCQPCVDKLLTGYKFQQLCIETNNRLHDLLGIAVFETEPKLEKILDPLTGDGDTSFKMKQEIEEDACFECEIQPDEMEGPIASDNDNDWGPGGGGSDSDSSNEKLSVLKQRSAKKSPLKVEHFEKPRKLNRFKGSFPCSECGKEFSSLNRLKQHTAIHEKKRAYSCKICHTSFIGEKPFKVHMLTHTNGEVANNEEGAGEQTNSIENNDSKNEFESQEFIEETTATEKNVADNEKEECIDSKDMLTFKCPDCPKCFEKKASLSAHYKVHKKKDFIKNNKCKKIEPEMLEKEDENVCNIVGEDANNVDDKVTKVMVKEEIEITPQIFEEPMDGDFEASAEWFNNDYEDSDDNSDKDLFGKHETKETKNIDFVDTGIGEIEKPNSSNKRSGSFPCEMCGKVFDRPYRLKRHSSVHSLTRPHECEICKYRFATVNILKAHLFQHENETGGNFNSQSRPEGFKCPDCPRRFEKQASLSAHRQIHTRNASEANYPCMVCQRNFMSVRSLTEHITNKHPEVEKHKCDQCDKTFVLHAHLVEHLNRHKGNKNLVCLICEKEFGYTNTLKEHMRTHSGESPYLCPQCGKTFRSASNLRQHMERHTGLKKYQCPECPSRFNCRSDLIKHASTHSNAKPHVCDICGSRFTRAYSLQKHKLLHSGERPFKCDQCSMTFAIIYHLRRHMRTHTGEKPYKCKYCERAYAESGDLTKHLRTHVGENTYMCDQCPMAFKYQAELRQHQSQHYKMAQKLLQQAQKMSEEAQQHEITEQTQPDQQHLQQTQPQQHEQHQPIQEHQHNQQLLKTDQIQHLPIGITSYQQIPLIDHRQQLNTIVEQQQHHAKIEDVAVARQQQQDNLDINNLSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00200049;
- 90% Identity
- iTF_00200049;
- 80% Identity
- -