Bole007275.1
Basic Information
- Insect
- Bactrocera oleae
- Gene Symbol
- -
- Assembly
- GCA_001188975.4
- Location
- LGAM02018580.1:1293493-1295503[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.5e-09 5.8e-06 26.1 0.3 3 45 231 273 230 273 0.92 2 3 5 1.1e+04 -3.6 0.1 28 36 303 311 303 314 0.74 3 3 1.1e-08 2.5e-05 24.1 0.0 11 40 349 377 344 381 0.89
Sequence Information
- Coding Sequence
- ATGTACGAAGAATTTAtgcttgaaaatgaaattgtggGGAATGCGAACGAGCTCAACATCAACAGAAAAGCAGTTGGCGATGGTTTAAATGATGTGGACgagaaagaaaatataataaaatcgaatttaCAAATGAAACAACTGCAACACCAGCAACATATAAAGGAGTGTAGAACAACAAACGTAGAAAAATCATTCGCTCTACGAAAAGATGGTTTTGCGAAGCGGCGCAACGAATTTTCAGATGGAGGTCATGTCCTTATGCTTACTCATCACGACAACCAACATTTTCACTTCGAATATGTGTCCCCCAAGCAAGATGAGAACGTACTGGATACAATCTCCGTTGTGGAACAGCACACAACATGTTTTCAAATGgatgaaaaacttaaaagtgAAAACATACCCATAAATCATACGAATCGAGTTCCATTTGCACAAAAGCATATGAAACATGAAGGGGTAGTTAAAGGGGAATTTTCAAGTGACAACAACCCAGTAAGCAATTTAGACTTCGCCGCAATGGTAGCCGAGGCTTGCGAAGgaatatttgatgaaatcgaaaaCGACTTGAgagcatacaataacaatagcaataataatagcTGTCatgataatgaaatattttctgattCTGTGTGTGATGGTGAAGAGCGTATTACGAAGAGAAAAAAACGAGCGCATAACTCGGAAGCGGTACAACTTGCTGCAAATGCCGTATTGGACGGTCGTATGAGTTTAGGGGAGGCTGCTAAGCGTTATAATGTGGTGCGTTCAACAGTGTCTTCACGAGTCGCCAAACATCCTAAACGTAAGAGACGAAAATCAAATAAGGAATTAGAGGAACTAATTTACAGTAAACTGAAGGCTGGTGTGCAAATTTCGGAAATTTCCCGATCTTTACATGTTCCCAAGTCaactgttcatttatataaaacaagacTGAAAGATAACGGATTGTTGCCTGCTGTATGGATTAGGAATGGCAGTAAAGATATGGTTGATCATGGCGTTCAAGATCGATTAATGCAAGCATATCGTGGTCATATTGTGAACGGAATGTCGGTACGTTTCGCTGCTGAGTTTTTTTCATTGCCGCTCACGACCTTATGGCGATATATAAAACGCAGAAAAGGTCCCACAGTGAACGACATTGACGATCACATTACAAAATCTGAAAGTGAAGAACCCACTGAGAAGGAAAGTTGTGTTTACAACGCTTCAAATGACTTTGAAGATTTAGAATTTGAAGGGAATCTGcatattaatgaaatgaaatcacCTCGCTGTCTAGCTTCATATCCTACAGGTCTGGAAACAGTTATTGAAAAAGAAGAACAAACGATAGAACAATCTTTATTAAATCAGCTGTTAGagtaa
- Protein Sequence
- MYEEFMLENEIVGNANELNINRKAVGDGLNDVDEKENIIKSNLQMKQLQHQQHIKECRTTNVEKSFALRKDGFAKRRNEFSDGGHVLMLTHHDNQHFHFEYVSPKQDENVLDTISVVEQHTTCFQMDEKLKSENIPINHTNRVPFAQKHMKHEGVVKGEFSSDNNPVSNLDFAAMVAEACEGIFDEIENDLRAYNNNSNNNSCHDNEIFSDSVCDGEERITKRKKRAHNSEAVQLAANAVLDGRMSLGEAAKRYNVVRSTVSSRVAKHPKRKRRKSNKELEELIYSKLKAGVQISEISRSLHVPKSTVHLYKTRLKDNGLLPAVWIRNGSKDMVDHGVQDRLMQAYRGHIVNGMSVRFAAEFFSLPLTTLWRYIKRRKGPTVNDIDDHITKSESEEPTEKESCVYNASNDFEDLEFEGNLHINEMKSPRCLASYPTGLETVIEKEEQTIEQSLLNQLLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00190598; iTF_00193487; iTF_00189869; iTF_00192014; iTF_00191288;
- 90% Identity
- iTF_00193487;
- 80% Identity
- -