Bmin018882.2
Basic Information
- Insect
- Bactrocera minax
- Gene Symbol
- -
- Assembly
- None
- Location
- JAPVRH010008335.1:2569-5656[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.089 6.8 7.6 0.5 1 23 560 583 560 583 0.93 2 11 9.7 7.5e+02 1.2 1.2 1 14 617 630 617 641 0.60 3 11 1.6e-05 0.0013 19.4 0.6 2 23 648 669 647 669 0.96 4 11 0.00039 0.03 15.1 0.4 1 23 675 698 675 698 0.89 5 11 0.002 0.15 12.8 2.7 2 23 706 728 705 728 0.95 6 11 1.9e-07 1.5e-05 25.5 0.6 2 23 738 760 737 760 0.96 7 11 9.9e-05 0.0076 16.9 1.1 1 23 786 808 786 808 0.96 8 11 0.005 0.39 11.6 4.4 1 19 816 834 816 839 0.93 9 11 8.2e-05 0.0063 17.2 0.6 1 23 845 867 845 867 0.98 10 11 2.9e-05 0.0022 18.6 1.0 1 23 874 896 874 896 0.98 11 11 0.00045 0.034 14.9 4.2 1 23 901 924 901 924 0.96
Sequence Information
- Coding Sequence
- ATGGGTTGCAGCGTGTACTGTCGCACCTGTGCAGCACCTCCATGTGACTTAGCAGACGGAATGATTGACATTTTTGCAAACACGAAAATTACTGCGCTTTTAAGTACTATAAAGGAATGGCAATTGGACATTACGCAGGACGATGGACTGTCGCAGTGTATTTGTAAGAAGTGCGAATTGGCGCTAATTAAGATTAATACATTCAGATTGCAAGCGTTGagagcaaaaaatgttttgcaaacGCGACTTCATTCATTACATACAACAACTGCCGGGAATGGTGAAGCAATCGACGACAATGAAAATGACCTTCATACTGAAACAAATTATGGTGGAGTGGAAATGCATAATAGGGAAGCCTTATCGCGAACTTTGCAATCCGAGTACACGTCTAtacaaatgtgcaaaaaaccgtttaatatatttaatgcaaatgaGAAAGTGAGCGAGAAAGAACaatcaaacaattttcaatcaGGTTTAAATGCAGTCGTTGAAGAAGCGGGTGAGTTATCGTTTGATTCGAATATTGAGTCTAGCAGACCACTCGAATTTCAGGTAATTCTAATTGAAGAGGAGGAAGAGTCGACACAGTGGATAAACGAAGACGAAAACGCTGTGGAGAAGAGAATTCAACCATTTGCGATGGGAATTATTGGATGTGAAGAACTTAATACTGGCAATAAAAGTACTTCAGGGGAAGGTACTGGAATACATccaataaattgtcaaagctTCTCCAAACCGTCAAAAACTATATCAACTGACTTCATAcccaatgaaaacaaattgagaaataaaaaacaaagccaaaaagcgaaatattacgaaataaaatcaaacaaattttctaaagtttCATCACTTGTTGAAAATAACTCACCAGTGACACAATTTCATTTGGTTAATAAAGAAACAATTAAGGGAATCGGACCTCTTTATGAAAGAGTAAACAACACTTTGGAAGATCCAGGACAAATAAGTGATATTCAGACACTATTATCCACAATAAGCAGCGGATCATTTGAATCAATTAAAGAGTCAAGTACCTGTTCGGCCGACGATTTACAATCAGTACTTATGAATCAACTCACACTTCAGATGATTAACGCAAATGTTAACATCTTGGAAGAGGATTTGCAAATTGATGACTTCGAAACCTTGCTGGCGGCGATAGATGACCAATCTTCCTTAGGGTCGATAAATAATAGTAAGGAACAATATCGCAGTCTTCTAAAAAACGgagaaaatgtattaaaagtaaacaatcaAAATTGGAAAGGAACTCCAGCACCTAATAtaggaaaacattttttgacgGAGGCTGCTTCtcatattgaaaaagaaacgaaaGGATATTTAACGGAAATGAATGAGAAAGCTGTCCCTTTACAAACAATTACAAGAGATCTTGAATCTAAATTTACAAATCATACAACAAATGGCCCTTCGAATAAAATGGCATGTAATAAAGACTTGATTGACAATGCTAttgttaaaaatcaaaaacttaaCGTAAAAGATGCACCTATCGTTCTTGGTCGTTCAAGTAAAATAACTTCAAGAAGTATGCGTTGCCGCCTTTGTGTTTGCAAGGTTTCGGACCAGCCTATTTTCGCTACAAAGCAGATATTGGATGACCATATAGCTTCAGTACATGATGATAAAGAACGGCCATATAATTGTCCTCAGTGTACGGCGCGGTACCGCACGCGAAGCGGCTGTGTAGCACACATAAACGCTATACACCTAAAAAAGGGGGACAAATGTGAATTGTGCGATAAAATTGTTATAGGCGGCGCCGGACAGATGCGTATGCATATTGAACGCAATCACACCCGCGGGAACTACACATGTGAGATCTGTAGCATAGAGCTGAAGAATATATCactttacaatttcaattatcaTAAAAGATGGCATAATGAAGATAAATTGTGGAGATGCGAGGTATGCGGCAAAGCATTTGTTACGCGCACACATCTAATAGAACACAAAGTGACACACACACGTCAAGGAGAGTTTCTCTGTACACGGTGCGgaaaaagTACGCGCAGTAAGTGGGAACTTCGTGCACATCTCTTTGCCATTCATGGCGAAGGAGAAGCGCCATTAAAGTGCAACTATTGTGATGAAAAGTTCACCCAGCATGTGCAGAAACGGGCTCATCTTGAGCGATATCATCCTATGGAGTTGGCTAAGCGTATAGTTCAGTGTCCAAAATGTGATAAGAATTTCTCTACAGAGACTAATCTTCAAAGGCACATTAACATACAACATATACAACAGCATGGGGTTAATGCCGATATAGGACTCTCAGACGTCATGACCTCTTCCCCACCACAATACGAAGGATTCATGTGCGCACATTGTCCTCGTAAATATCGCTCTAAATACGCTCTTATTAAACATCTTGGGGTGCATGCGGTGATGGCAGATCGGCCATATTCATGTCCTGATTGTGATATGCACTTTAAGCACTTCTCAGAATTAGATCGGCATGATTTACAGCATCATGCTACAGTACGCCCTTACAGATGTGATAAGTGTTTAAAGGCATTTGCTACAAAAACTACGCTTAAAATCCACGGTCAAGTTCACGAAGTAAAGGGTAGAAACTTTCGATGTCCAGAATGTAATCAACGATTCAAATTTGAGAAGTCTTTAAACCTGCACATTATTTCGCACAAAACAATGCGCCATAGctgtgaaatttgtaaaaaatcatACATAAGATTAACACAATTGAAGACCCACAAAAATCGATATCATAAAAAAACGAGTGATTCAGAGGAAGAATAA
- Protein Sequence
- MGCSVYCRTCAAPPCDLADGMIDIFANTKITALLSTIKEWQLDITQDDGLSQCICKKCELALIKINTFRLQALRAKNVLQTRLHSLHTTTAGNGEAIDDNENDLHTETNYGGVEMHNREALSRTLQSEYTSIQMCKKPFNIFNANEKVSEKEQSNNFQSGLNAVVEEAGELSFDSNIESSRPLEFQVILIEEEEESTQWINEDENAVEKRIQPFAMGIIGCEELNTGNKSTSGEGTGIHPINCQSFSKPSKTISTDFIPNENKLRNKKQSQKAKYYEIKSNKFSKVSSLVENNSPVTQFHLVNKETIKGIGPLYERVNNTLEDPGQISDIQTLLSTISSGSFESIKESSTCSADDLQSVLMNQLTLQMINANVNILEEDLQIDDFETLLAAIDDQSSLGSINNSKEQYRSLLKNGENVLKVNNQNWKGTPAPNIGKHFLTEAASHIEKETKGYLTEMNEKAVPLQTITRDLESKFTNHTTNGPSNKMACNKDLIDNAIVKNQKLNVKDAPIVLGRSSKITSRSMRCRLCVCKVSDQPIFATKQILDDHIASVHDDKERPYNCPQCTARYRTRSGCVAHINAIHLKKGDKCELCDKIVIGGAGQMRMHIERNHTRGNYTCEICSIELKNISLYNFNYHKRWHNEDKLWRCEVCGKAFVTRTHLIEHKVTHTRQGEFLCTRCGKSTRSKWELRAHLFAIHGEGEAPLKCNYCDEKFTQHVQKRAHLERYHPMELAKRIVQCPKCDKNFSTETNLQRHINIQHIQQHGVNADIGLSDVMTSSPPQYEGFMCAHCPRKYRSKYALIKHLGVHAVMADRPYSCPDCDMHFKHFSELDRHDLQHHATVRPYRCDKCLKAFATKTTLKIHGQVHEVKGRNFRCPECNQRFKFEKSLNLHIISHKTMRHSCEICKKSYIRLTQLKTHKNRYHKKTSDSEEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00191556; iTF_00193026; iTF_00190859; iTF_00190166; iTF_00193796;
- 90% Identity
- -
- 80% Identity
- -