Bcor001933.1
Basic Information
- Insect
- Bactrocera correcta
- Gene Symbol
- -
- Assembly
- GCA_027475135.1
- Location
- CM050325.1:24560001-24563010[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4 4.6e+02 2.3 0.2 9 23 486 501 473 501 0.93 2 12 0.32 37 5.8 0.3 1 23 508 531 508 531 0.93 3 12 6.6 7.5e+02 1.6 2.1 1 23 565 589 565 589 0.60 4 12 2.4e-05 0.0028 18.7 0.7 2 23 596 617 595 617 0.96 5 12 0.00016 0.018 16.2 1.3 1 23 623 646 623 646 0.94 6 12 0.0017 0.19 12.9 2.7 2 23 654 676 653 676 0.95 7 12 4.1e-06 0.00047 21.2 2.4 2 23 686 708 685 708 0.95 8 12 8.5e-06 0.00097 20.2 2.0 1 23 731 753 731 753 0.98 9 12 0.014 1.6 10.0 4.3 1 19 761 779 761 784 0.93 10 12 3e-05 0.0035 18.4 0.6 1 23 790 812 790 812 0.98 11 12 2.4e-05 0.0028 18.7 1.0 1 23 819 841 819 841 0.98 12 12 0.00018 0.021 16.0 3.2 1 23 846 869 846 869 0.96
Sequence Information
- Coding Sequence
- ATGGGTTGCAGCGTGTACTGTCGCACCTGTGCTGTACCGCCTAAAGACTTAGCAGATGGAATGATCGATATTTTTGCTAACACGAAAATTACTGCACTTTTAAATACAATAAAGGAATGGAAATTGGACATTACGCAGGACGATGGACTGTCGCAGTGCATTTGTAAGAAATGCGAATTGGCGCTAATTAAGATTAATACATTCCGATTGCAAGCGTTGAATGCAAAAAAATACTTGCAAACGCGACTTTATTCAATAGAGGCAACAGCCGGGGTTGGAGAATCAATCGACGACAATGAAAATGACCTTCATACGGAAACAAATTATGATGGAGTAGAAATGCATAATAGGGAAATCTTACCGCGTACTTTGCAATCCGAGTACACATCTATACAAATGTGCAAAAGAACGATAAATATATTTAATTCAAATGAGAAAGTGAGCGATAAAGAACAATCAAACAATTTTGAATCAGGTTTAAATGCAGTCGTCGAAGAAAGGGGCGAGTTACCGTTTGATTCGAATAATGAGCCTAGTAGACCACACGAATTTCAGCTAATACTAATTGAAGAGGAGGAGGAGTCGACACAGTGGATAAGCGAAGACGAAAACGCGGGAGAAAAAAGAATTCAACCACATTCGATGGGAATTATTGAATGTGAAGAACTTTATACTTGCAATAAAAATACTTCAGCGGAATCTATTGAAACACATCCTATAAATTTGCATAGTTTCACTAAACCGTCAAAAAATAAATCAACTGAGTTCATGCCCAACGAAAAAAAAATGACAAATAGAAAGCAAGGTCAAAAAAGGAAATATTACGAAATAAAGCCAAACGAATTTTCTAAAGTTTCATCACTTGTTGATGAACCAGGAACACAATTTCATTTAGTTCCCAAAGAGACAATAAAAGAAATTGTACCTATTTATGAAAAAAACGACAACACTTTAGAAGATCCAGCACAAATAAGTGATATTCAAACATTATTAGCCACAATAAGCAGCGGATCATTTGAATCAATTAGAGATTCAAGTCCCTGCTCGGCCGACGATTTACAATCAGTGCTTATGAATCAATTCACACTTCAAATGATCAACGCAAATTTTAACATCTTGGAAAACGATTTACATATTGACGACTTCGACACCTTGCTGGCGGCGGTTGATGAGCAAGCCTCTTTAGGGTCGATAAATAATAAGGAAAAATATTCCGGTTCTCTGAAAAACGGAGGAAATGTATTAAAAGTAAAAATGGGTTGCTGCAAAGAAATACCTGCACCAAATATAGGAGAAAAGGGAAACGAATGGGAAATGAATGAAAGAGCTATCCCTTTACAAACAACAACAAGAGATCCTGAATCTAAATCAACATCTGTCGCTGGTCGCTCAAATAAAATAACTTCAAGAAGTTTGCGTTGCCGCCTTTGTGTATACTCTGTTTCGGACCAGCCTGTTTTCGCCACCAAAGAGATGCTGGATAACCATATAGCTACAGTACACGATGATAAAGAACGGCCTTATAATTGTCCTCAGTGTGCGGCACGGTACCGCACGCGAAGCGGCTGTGTTGCACACATAAACGCTATACACCTTAAAAAGGGGGACAAATGTAAATTGTGTGATAAAATTGTTGCAGGCGGCGCCGGACAGATGCGTATGCATATCGAACGAAATCACACCCACGGCAACTATACATGTGAGATCTGTCATGTGGAGCTGAAAAACATATCACTTTACAATTTCAAGTATCATAAAAGATGGCACAATGAAGATAAATTATGGAGATGCGAGCTTTGCGGGAAAGCATTTGTTACGCGCACACATCTAATAGAACACAAAGTGACGCACACACGACAAGGCGAATTTCTCTGTACACGGTGCGGAAAAAGTACGCGCAGTAAATGGGAACTTCGTACACACCTCTTTACCATTCATGGCGAAGGAGAAGCGCCGTTAAAGTGCAACTATTGTGATGAAAAGTTCACTCAACATGTACAGAAACGTGCTCATCTTGAGCGATATCATCCTATGGAGTTGGCTAAGCGTATAGTTTCGTGTCCAAAATGTGAAAAGCATTTTTCTACAGAGACGAATCTTCAACGGCACATTAAACAACAGCATAATGAGGTTAATGCCGATATCGAGCCCTCCGATATGGTTACCTCTTCCCCACCACAATACGAAGGATTCATGTGCGCACATTGTCCTCGTAAATATCGTTCTAAATACGCACTTATTAAACATCTGAGGGTACATGCGATAATGGCCGATAGACCATATTCATGTCCTGATTGTGAGATGCACTTTAAGCACTTCTCAGAATTAGATAGGCATGATTTGCAGCATCATGCTACAGTGCGCCCTTACAGATGCGATAAGTGTTTTAAGGCTTTTGCTACCAAAACAGCGCTTAAAATCCACGGACAAGTTCACGAAGCAAAGGGTAGAAACTTTCGATGTCCAGAATGTAATCAACGCTTCAAATTTGAAAAGTCTTTAAACCTGCACATTATTTCCCACAAAACAATGCGACACAGCTGTGAAATTTGCAAAAAATCATACATACGATTAGCACAATTGAAAACCCACAAAAATCGTTACCATAAAAAAACGAGTGATACAGAGGAAGAATAA
- Protein Sequence
- MGCSVYCRTCAVPPKDLADGMIDIFANTKITALLNTIKEWKLDITQDDGLSQCICKKCELALIKINTFRLQALNAKKYLQTRLYSIEATAGVGESIDDNENDLHTETNYDGVEMHNREILPRTLQSEYTSIQMCKRTINIFNSNEKVSDKEQSNNFESGLNAVVEERGELPFDSNNEPSRPHEFQLILIEEEEESTQWISEDENAGEKRIQPHSMGIIECEELYTCNKNTSAESIETHPINLHSFTKPSKNKSTEFMPNEKKMTNRKQGQKRKYYEIKPNEFSKVSSLVDEPGTQFHLVPKETIKEIVPIYEKNDNTLEDPAQISDIQTLLATISSGSFESIRDSSPCSADDLQSVLMNQFTLQMINANFNILENDLHIDDFDTLLAAVDEQASLGSINNKEKYSGSLKNGGNVLKVKMGCCKEIPAPNIGEKGNEWEMNERAIPLQTTTRDPESKSTSVAGRSNKITSRSLRCRLCVYSVSDQPVFATKEMLDNHIATVHDDKERPYNCPQCAARYRTRSGCVAHINAIHLKKGDKCKLCDKIVAGGAGQMRMHIERNHTHGNYTCEICHVELKNISLYNFKYHKRWHNEDKLWRCELCGKAFVTRTHLIEHKVTHTRQGEFLCTRCGKSTRSKWELRTHLFTIHGEGEAPLKCNYCDEKFTQHVQKRAHLERYHPMELAKRIVSCPKCEKHFSTETNLQRHIKQQHNEVNADIEPSDMVTSSPPQYEGFMCAHCPRKYRSKYALIKHLRVHAIMADRPYSCPDCEMHFKHFSELDRHDLQHHATVRPYRCDKCFKAFATKTALKIHGQVHEAKGRNFRCPECNQRFKFEKSLNLHIISHKTMRHSCEICKKSYIRLAQLKTHKNRYHKKTSDTEEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00192270;
- 90% Identity
- -
- 80% Identity
- -