Bdor008804.1
Basic Information
- Insect
- Bactrocera dorsalis
- Gene Symbol
- -
- Assembly
- GCA_000789215.2
- Location
- NW:99266-105571[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.3 2.4e+02 2.0 0.0 9 23 522 537 509 537 0.93 2 12 0.28 16 5.7 0.3 1 23 544 567 544 567 0.93 3 12 3.7 2.1e+02 2.2 2.0 1 21 601 623 601 625 0.61 4 12 2.2e-05 0.0012 18.7 0.7 2 23 632 653 631 653 0.96 5 12 0.00014 0.008 16.1 1.3 1 23 659 682 659 682 0.94 6 12 0.0015 0.084 12.9 2.7 2 23 690 712 689 712 0.95 7 12 3.6e-06 0.0002 21.1 2.4 2 23 722 744 721 744 0.95 8 12 7.5e-06 0.00042 20.1 2.0 1 23 767 789 767 789 0.98 9 12 0.045 2.6 8.2 6.0 1 19 797 815 797 820 0.94 10 12 2.7e-05 0.0015 18.4 0.6 1 23 826 848 826 848 0.98 11 12 1.5e-05 0.00087 19.1 0.9 1 23 855 877 855 877 0.98 12 12 8.6e-05 0.0049 16.8 1.1 2 23 883 905 882 905 0.95
Sequence Information
- Coding Sequence
- ATGGGTTGCAGCGTGTACTGTCGCACCTGTGCTGTACCGCCTAGAGACTTAGCAGATGGAATGATCAATATTTTTGCTAACACGAAAATTACTGcacttttaaatacaataaaggAATGGCATTTGGACATTACGCAGGACGATGGACTGTCGCAGTGTATTTGTAAGAAGTGCGAATTGGCGCTAATTAAGATTAATACATTCCGATTGCAAGCgttgaatgcaaaaaaatacttGCAAACGCGACTATATTCAATAGAGACAACAGCCGGGGTTGGAGAATCAATCGACGACAATGAAAATGACCTTCATACGGAAACAAATTATGGTGGAGTAGAAATGCATAATAGGGAAATCTTACCGCGTACTTTGCAATCCGAGTACACATCTAtacaaatgtgcaaaaaaacgataaatatatttaattcaaatgagAAAGTGAGTGATAAAGAAcaatcaaacaattttgaatcAGGTTTAAATGCAGTCGTCGAAGAAAGGGGTGATTTACCGTTTGATTCGAATAATGAGACTAGTACACCACACGAATTTCAGGTAATACTAATTGAAGAGGAGGAGGAGTCGACACAGTGGATAAGCGAAGACGAAGACGAAAACGCGGAGAAAAAAAGAATTCAACCACATTCGACGGGAATTATTGAATGTGAAGAACTTtataatggcaataaaaatacttCAGCGGTATCTACTGAAAAACATCCTATAAATTTTCATAGTTTCACtaaaccttcaaaaaataaatcaactgaGTTCATGCCCAATGAAAAAACATTAAGAAATAGAAAGCAAGgccaaaaaaggaaatataacGAAATAAGGCCAAACGAATTTTCTAAAGTATCATCACTTGTTGATagtaacacaacaacaacacaatttcaTTTGGTTCCCAAAGagacaataaaagaaattgtgcctatttatgaaaaaaacgaCAACACTTTAGATGATCCAGCACAAATAAGTGATATTCAAACATTATTAGCCACAATAAGCAGTGGATCATTTGAATCAATTAGAGATTCAAGTCCCTGCTCGGCCGACGATTTACAATCAGTGCTTATGAATCAATTCACAATTCAAATGATCAACGCAAATTTTAACATCCTGGAAAACGATTTACAAATTGACGACTTCGACACCTTGCTGGCTGCGGTTGATGAGCAAGCCTCTTTAGGGTCGAtaaataataaggaaaaatattCCAGTTCTCTGAAAAATggagcaaatttattaaaagtcaAAATGGGTAGCTGCCAACAAATACCTGCACAAAATATAGGAGAAAAGGGAAACGAATgggaaatgaatgaaaaagctATCCctttacaaacaacaacaagagatCCTGAatctaaatttataaatcatACACCAAATGGTCCTCCTTATAAATTGGCATACAATAAAATGTCGATAGACAGTgttgttaaaaatgaaaaatcaaacgTAAAAGCAACATCCGTCCCTGGTCGCTCAAATAGAATAACTTCAAGAAGTTTGCGTTGCCGCCTTTGTGTACACTCTGTTTCGGACCAGCCTGTTTTCGCCGACAAAGAGATGCTGGATAACCATATAGCTACAGTACACGATGATAAAGAACGGCCTTATAATTGTCCTCAGTGTGCGGCACGATACCGCACGCGAAGCGGCTGTGTTGCACACATAAACGCAATACACCTTAAAAAGGGGGACAAATGCGAATTGTGTGATAAAATTGTTGCAGGCGGCGCCGGACAGATGCGTATGCATATCGAACGCAATCACACCCACGGCAACTATACATGTGAAATCTGTCATATGGAGCTGAAGAACATATCACTTTACAATTTCAAGTATCATAAAAGATGGCACAATGAAGATAAATTATGGAGATGCGAGCTTTGCGGGAAAGCATTTGTTACGCGCACACATTTAATAGAACACAAAGTGACGCACACACGAAAAGGCGAATTTCTCTGTACACGGTGCGGAAAAAgtaCGCGCAGTAAATGGGAACTTCGTACACACCTCTTTACCATTCACGGCGAAGGAGAAGCGCCATTAAAGTGCAACTATTGTGATGAAAAGTTCACTCAGCATGTACAGAAACGTGCTCATCTTGAGCGATATCATCCTATGGAGTTGGCTAAGCGTATAGTTTCGTGTCCAAAATGTGAAAAGCATTTCTCTACAGAGACGAACCTTCAAAGGCACATTAAACAACAGCATAATGAGGTTAATACCGAAATGGAGTCCTCCGATATGGTGACCTCTTCCACACCACAATACGAGGGATTCATGTGCGCACATTGCCCTCGTAAATATCGTTCTAAATACGCACTTATTAAACATCTGAGGGTGCATGCGGTAGTGGCAGATAGGCCATATTCATGTCCTGATTGTGAGATGCACTTTAAGCACTTTTCCGAATTAGATAGGCATGATTTGCATCATCATGCTACAGTACGCCCTTACAGATGCGATAAGTGTTTTAAGGCTTTTGCTACCAAAACAGCGCTTAAAATCCACGGACAAGTTCACGAAGCAAAGGGTAGAAACTATCGATGTCCAGAGTGTAATCAACgcttcaaatttgaaaaatctttaaacCTGCACATTATTTCCCACAAAACAATGCGACTCAGCtgtgaaatttgcaaaaaatcataCATACGATTAGCACAATTGAAAACCCACAAAAATCGTTACCATAAAAAAACGAGTGATACAGAGGAAGAATAA
- Protein Sequence
- MGCSVYCRTCAVPPRDLADGMINIFANTKITALLNTIKEWHLDITQDDGLSQCICKKCELALIKINTFRLQALNAKKYLQTRLYSIETTAGVGESIDDNENDLHTETNYGGVEMHNREILPRTLQSEYTSIQMCKKTINIFNSNEKVSDKEQSNNFESGLNAVVEERGDLPFDSNNETSTPHEFQVILIEEEEESTQWISEDEDENAEKKRIQPHSTGIIECEELYNGNKNTSAVSTEKHPINFHSFTKPSKNKSTEFMPNEKTLRNRKQGQKRKYNEIRPNEFSKVSSLVDSNTTTTQFHLVPKETIKEIVPIYEKNDNTLDDPAQISDIQTLLATISSGSFESIRDSSPCSADDLQSVLMNQFTIQMINANFNILENDLQIDDFDTLLAAVDEQASLGSINNKEKYSSSLKNGANLLKVKMGSCQQIPAQNIGEKGNEWEMNEKAIPLQTTTRDPESKFINHTPNGPPYKLAYNKMSIDSVVKNEKSNVKATSVPGRSNRITSRSLRCRLCVHSVSDQPVFADKEMLDNHIATVHDDKERPYNCPQCAARYRTRSGCVAHINAIHLKKGDKCELCDKIVAGGAGQMRMHIERNHTHGNYTCEICHMELKNISLYNFKYHKRWHNEDKLWRCELCGKAFVTRTHLIEHKVTHTRKGEFLCTRCGKSTRSKWELRTHLFTIHGEGEAPLKCNYCDEKFTQHVQKRAHLERYHPMELAKRIVSCPKCEKHFSTETNLQRHIKQQHNEVNTEMESSDMVTSSTPQYEGFMCAHCPRKYRSKYALIKHLRVHAVVADRPYSCPDCEMHFKHFSELDRHDLHHHATVRPYRCDKCFKAFATKTALKIHGQVHEAKGRNYRCPECNQRFKFEKSLNLHIISHKTMRLSCEICKKSYIRLAQLKTHKNRYHKKTSDTEEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00192270;
- 90% Identity
- iTF_00191556; iTF_00193796;
- 80% Identity
- -