Blat006994.1
Basic Information
- Insect
- Bactrocera latifrons
- Gene Symbol
- -
- Assembly
- GCA_001853355.1
- Location
- NW:578570-583156[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.26 15 5.8 0.3 1 23 542 565 542 565 0.93 2 11 3.8 2.1e+02 2.2 2.0 1 21 599 621 599 623 0.61 3 11 2.2e-05 0.0012 18.7 0.7 2 23 630 651 629 651 0.96 4 11 0.00014 0.008 16.1 1.3 1 23 657 680 657 680 0.94 5 11 0.0015 0.085 12.9 2.7 2 23 688 710 687 710 0.95 6 11 3.7e-06 0.0002 21.1 2.4 2 23 720 742 719 742 0.95 7 11 7.6e-06 0.00042 20.1 2.0 1 23 765 787 765 787 0.98 8 11 0.013 0.72 9.9 4.3 1 19 795 813 795 818 0.93 9 11 1.9e-05 0.0011 18.8 0.6 1 23 824 846 824 846 0.98 10 11 2.2e-05 0.0012 18.7 1.0 1 23 853 875 853 875 0.98 11 11 0.00017 0.0093 15.9 3.2 1 23 880 903 880 903 0.96
Sequence Information
- Coding Sequence
- ATGGGTTGCAGCGTGTACTGTCGCACCTGTGCTGTACCGCCTAGAGACTTAGCAGATGGAATGATCGATATTTTTGCTAACACGAAAATTACTGCacttttaaatacaataaaggACTGGCAATTGGACATTACACAGGACGATGGACTGTCGCAGTGTATTTGTAAGAAGTGCGAATTGGCGCTAATTAAGATTAATACATTCCGATTGCAAGCGttgaatgcaaaaaaatacTTGCAAACGCGACTATATTCAATAGAGACAACAGCAGGGGTTGACGAATCAATCGACGACAATGAAAATGACCTTCATACGGAAACAAATTATGGTGGAGTAGAAATGCATAATAGAGAAATCTTACCGCGTACTTTGCAATCCGAGTACACATCTAtacaaatgtgcaaaaaaacgataaaaaaatttaattcaaatgagAAAGTGAGCGAGAAAGAACaatcaaacaattttgaatCAGGTTTAAATGCAGTCGTCGAAGAAAGGGGTGAGTTACCGTTTGATTCGAATAATGAGCCTAGTAGACCACACGAATTTCAGGTAATACTAATTGAAGAGGAGGAGGAGTCGACACAGTGGATAAGCGAAGACGAAAACGCGGGGGAGAAAAGAATTCAACCACATTCGATGGGAATTATTGAATGTGAAGAACTTTATACTGGCAATAAAAATACTTCAGCGGTATCCACTGAAACACATCCTATAAATTTGCGTAGTTTCACTAAACCTTCAAAAAATAGATCAACTGAGTTCATGAACAATGAAAAAACATTGAGAAATAGAAGACAAGCCCAAAAAAAGATATACTACGAAGTAAAGCCAAACGAATCTTCTAAAGTTTCATCACTTGTTGATAATAACCCACCAGAAACACAATTTCATTTGGTTCCcaaagaaacaataaaagaaattgtacctatttatgaaaaaaacgaCAACACTTTAGAAGATCCAGCACAAATAAGTGATATTCAAACATTATTAGCCACAATAAGCAGCGGATCATTTGAATCAATTAGAGGTTCAAGTCCCTGCTCGGCAGACGATTTACAATCAGTGCTTATGAATCAATTCACACTTCAAATGATCAACGCAAATTTTAACATCCTGGAAAACGATTTGCAAATTGACGACTTCGACACCTTGCTGGCGGCGGTTGATGAGCAATCCTCTTTAGGATCGATAAATAATAGGGAAAAATATTCCGGTTCTCTGAAAAACGGAGGAAAtgtattaaaagtaaaaatgggTTGCTGCAAAGGAATACCTGCACCAAATATAGGAGAAAGGGGAAACGAATGGGAAATGAATGAAAAAGCTATCCctttacaaacaacaacaacagatcctgaatataaatttataaaccaTACACCAAATGGTCCTCCCTATAAATTGGCATATAATAAAATGTCGATTGACAGTGtggttaaaaatgaaaaaacaaacgTAAAAGCAACACCCGTCGCTGGTCGCTCAAATAAAATAACTCCAAGAAGTTTGCGTTGTCGCCTTTGTGTATACTCTGTTTCGGATCAGCCTGTTTTCGCCACCAAAGAGATGCTGGATAACCATATAGCTGCAGTACACGATGATAAAGAACGGCCTTATAATTGCCCTCAGTGTGTGGCACGGTACCGCACGCGAAGCGGCTGTGTTGCACACATAAACGCAATACACCTTAAAAAGGGGGACAAATGTAAATTGTGTGATAAAATAGTTGCAGGCGGCGCCGGACAGATGCGTATGCATATCGAACGCAATCACACCCACGGCAACTATACATGTGAGATCTGTCATATGGAGCTGAAGAACATATCACTTTACAATTTCAAGTATCATAAAAGATGGCACAATGAAGATAAATTATGGAGATGCGAGCTCTGCGGGAAAGCGTTTGTTACGCGCACACATCTAATAGAACACAAAGTGACGCACACACGACAAGGCGAATTTCTCTGTACGCGGTGCGGAAAAAgtaCGCGCAGTAAATGGGAACTTCGTACACATCTCTTCACCATTCATGGCGAAGGAGAAGCGCCATTAAAGTGCAACTATTGTGATGAAAAGTTCACTCAACATGTACAGAAACGTGCTCATCTTGAGAGATATCATCCTATGGAGTTAGCTAAGCGTATAGTTTCGTGTCCAAAATGTGAAAAGCATTTCTCTACAGAGACGAATCTTCAGCGGCACATTAAACAACAGCATAATGAGGTTAATGCCGATATCAAGCCCTCCGATACGGTTACCTCTTCCACACCACAATACGAAGGATTCATGTGCGCACATTGCCCTCGTAAATATCGTTCTAAATACGCACTTATTAAACATCTGAGGGTGCATGCGGTGATGGCGGATAGGCCATATTCATGTCCTGATTGTGAGATGCACTTTAAGCACTTCTCAGAATTAGATAGGCATGATTTGCAGCATCATGCTACAGTACGCCCTTACAAATGCGATAAGTGTTTTAAGGCTTTTGCTACCAAAACAGCACTTAAAATCCACGGACAAGTTCACGAAGCAAAGGGTAGAAACTTTCGATGTCCAGAATGTAATCAACgcttcaaatttgaaaaatctttaaacCTGCACATTATTTCCCACAAAACAATGCGACACAGCtgtgaaatttgcaaaaaatcataCATACGATTAGCACAATTGaaaaCCCACAAAAATCGTTACCATAAAAAAACGAGTGATACAGAGGAAGAATAA
- Protein Sequence
- MGCSVYCRTCAVPPRDLADGMIDIFANTKITALLNTIKDWQLDITQDDGLSQCICKKCELALIKINTFRLQALNAKKYLQTRLYSIETTAGVDESIDDNENDLHTETNYGGVEMHNREILPRTLQSEYTSIQMCKKTIKKFNSNEKVSEKEQSNNFESGLNAVVEERGELPFDSNNEPSRPHEFQVILIEEEEESTQWISEDENAGEKRIQPHSMGIIECEELYTGNKNTSAVSTETHPINLRSFTKPSKNRSTEFMNNEKTLRNRRQAQKKIYYEVKPNESSKVSSLVDNNPPETQFHLVPKETIKEIVPIYEKNDNTLEDPAQISDIQTLLATISSGSFESIRGSSPCSADDLQSVLMNQFTLQMINANFNILENDLQIDDFDTLLAAVDEQSSLGSINNREKYSGSLKNGGNVLKVKMGCCKGIPAPNIGERGNEWEMNEKAIPLQTTTTDPEYKFINHTPNGPPYKLAYNKMSIDSVVKNEKTNVKATPVAGRSNKITPRSLRCRLCVYSVSDQPVFATKEMLDNHIAAVHDDKERPYNCPQCVARYRTRSGCVAHINAIHLKKGDKCKLCDKIVAGGAGQMRMHIERNHTHGNYTCEICHMELKNISLYNFKYHKRWHNEDKLWRCELCGKAFVTRTHLIEHKVTHTRQGEFLCTRCGKSTRSKWELRTHLFTIHGEGEAPLKCNYCDEKFTQHVQKRAHLERYHPMELAKRIVSCPKCEKHFSTETNLQRHIKQQHNEVNADIKPSDTVTSSTPQYEGFMCAHCPRKYRSKYALIKHLRVHAVMADRPYSCPDCEMHFKHFSELDRHDLQHHATVRPYKCDKCFKAFATKTALKIHGQVHEAKGRNFRCPECNQRFKFEKSLNLHIISHKTMRHSCEICKKSYIRLAQLKTHKNRYHKKTSDTEEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00192270;
- 90% Identity
- iTF_00190859;
- 80% Identity
- -