Basic Information

Gene Symbol
nfxl1
Assembly
GCA_000789215.2
Location
NW:217970-221918[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 1.6 1e+04 -3.8 2.1 15 19 217 221 216 221 0.82
2 18 0.14 8.7e+02 -0.4 0.4 4 10 252 258 251 258 0.95
3 18 5.8e-09 3.6e-05 23.2 15.1 1 19 266 283 266 283 0.98
4 18 1.6 1e+04 -3.8 1.1 5 10 308 313 308 313 0.91
5 18 3.3e-06 0.02 14.4 14.8 1 19 319 338 319 338 0.96
6 18 1.1e-07 0.00066 19.1 12.5 1 19 373 391 373 391 0.99
7 18 1.4 8.5e+03 -3.6 0.4 1 8 416 422 416 423 0.59
8 18 8e-08 0.00049 19.5 10.6 1 18 426 443 426 444 0.96
9 18 0.23 1.4e+03 -1.1 0.5 1 5 453 457 453 462 0.75
10 18 2 1.2e+04 -5.1 2.3 5 10 467 472 467 472 0.91
11 18 0.00014 0.89 9.1 15.1 1 18 478 496 478 497 0.92
12 18 4.1e-08 0.00025 20.5 15.5 1 18 506 523 500 524 0.86
13 18 0.0063 39 3.9 6.1 9 18 569 578 567 579 0.89
14 18 0.039 2.4e+02 1.3 4.7 3 11 592 600 582 601 0.86
15 18 0.94 5.8e+03 -3.1 1.4 6 10 661 665 660 665 0.88
16 18 3.4e-06 0.021 14.3 5.4 1 11 671 681 671 682 0.96
17 18 0.0062 38 3.9 15.7 3 18 711 726 710 727 0.93
18 18 0.00011 0.68 9.5 16.4 1 16 778 792 778 798 0.92

Sequence Information

Coding Sequence
ATGAAAAAtcctccaaaaataaataaattacaaatttctggTAACCTTGAAGTGGATCTGAAACAGCCGGttcagaaaattgttttaattccCACGTCAGAAACAgaaatcttaacaatttctaaaaaaatgtctGTGTTTTCTGCCAAGAACGAAAAAATGAAAGGAGGCTCCAAGTCAAATCAACAAAAACCGAATGGAGCAACTCGTTTTGAAGAAGTACATGCACGGCATATAGCTGCCGCAAAgaaaatagtggaaaaataTTCCTCTAGTTCCGATGAAGAGGAAGAGGAGCTTAACGAATCTAAAATATTAgaTTCTCTATTTAAGCATTACAAGTCTGACGGCAGCCGCTTAGGTATCCAACAAgcactacaacaaaaaactgcTACCTTCTTTGAAAACGCTTTGCATTCAGGATCAGCAACTTGTCTAATTTGTATTGGTAGTGTGCGCCGAGCTGACTCGATTTGGACCTGTAAACATTGCTATTGTTTCTTCCATTTAAACTGTATACGACGCTGGGCCAATGATAGCATCGCGCAGCAGAAAGCATCCACTGAACAAACAAGCAATGAACAGGGTTACTACAATAATCTTGGACAGTTCGTACCGCCGAAGCGGAAGCGGCCATTGCACTGGAGTTGTCCACAGTGTCGCAAAGATTACTGTTTGGAGGAAAAGCCGGCAACTTATAAGTGCTTTTGtggaaaagaagaaaatccACGCCCCGCAGCATTTTTATTACCGCATTCTTGTGGAGAAATATGCGGAAAAAACTTGCAACCAACCTGTGGTCATACATGTATGTTGCTTTGCCATCCGGGTCCATGCCCGCCCTGTTCTCAGTATGCTACAACCAGTTGCCTATGTGGTCAATCACAGAAAAAATCCGTACGTTGTATAGATAAAGAGTGGAAATGTGATAGAAAGTGTAAAGAATTACTTCCATGTGGCGAACATCGATGTAAAGAGTTATGTCATAAGCCCAATCAGTGTCCACCATGTACGAGTACCAGTTTGCAGCCGTGCGAATGTGGTGCTGAGACGAAGAAACGTAATTGTTCCGAACTTAAATGGCATTGCAAAAAGaTTTGCGGCTCAAAATATTCTTGTGGAGCACACGTGTGTAAGCGCGTATGCCACTCGGGGTCTTGCGGTGATTGTCCTTTAAGTTTACCGCGTTCATGTCCATGTGGTAAAACCCAAAAAATCGTACCGTGTATCGAAAACATTGATCCTTGTGGTGATACTTGTCAAAAACTATTATCGTGTGGGCTGCATACTTGCACGCAACGATGTCATCGTGGCGAATGTAATTTGtgtttaataataacaaaaaagaaatgccGCTGTGGCATACATGAAAAGGAATTGCCGtgctggaaaatatttacatgtgaAACCAAATGCAAGCAAATGAGAGATTGTGGCAAACATACTTGTAACAAAAAGTGTTGTGATGGTCGCAGCTGTCAACAATGTgataaaatatgtggaaaacCGCTCACTTGTCAAAAACACAAGTGCCAGTCGGTTTGTCATGAAGGACCTTGTTATCCTTGTAATCAGCAATCACAAGTAAATTGTCGATGTGGAAAAACATCAAAACGTGTCCCTTGTGGACGTGAACGTACAGCCCGCGTTATGTGCATGGAATTATGCCGTATTCCTTCAAAATGTCACCATCCAATCAAACATCGCTGTCACAAAAACGAATGTCCACCTTGTAATCAAAAATGTGGACAGGTAAATGACACCACTGGATGTCTGCATATTTGCGAAGCTAAGTGTCATGCCGCAGTTAAAGTTATCAAACAAAATCCGATTAATGGCGGTGCAAATGTGTGGCATCAAAGCAAACagTTTGAATTCAAAAAGCAGCCGCATCCGCCATGTGAACAATTGGTGAAAGTCACGTGTATTGGTGGTCATGAAATAGCTGAATGGCCTTGTTGGAATTCTAAACCAACATCCTGTCAACGCAAATGTAATCGAGCATTGCGTTGTGGTAACCACAAATGTGAGCTTATATGCCACGCCGTGCCCGACTTGAAAGATATGAAGgAGCAACTTGGCTGCGCCCGATGCCAAGAGGGTTGCAATGTATCCCGTCCAGCGGGTTGTGAGCATGCTTGCCCTCGACCTTGTCACGCTCCGCCATGTAATCCATGTGACAAAATGATCAAAAACAAATGTTATTGTGGTTTAACACAATTAATCTACAAATGTTCAGAATATTTTCGAGTCGAAGGTACCAAAGAGGAAATCGCTTTAACACAGGAACGCCTGAAGAGCTGCGGAAACCGTTGCCTCAAAACTTTTTCATGCGGTCATCGCTGTCATACACCTTGTCATCCGGGGAAGTGTCCAAACCCGGAATTGTGTCGCAAAAAAGTGCGCATATTTTGCGAATGCAAACGTTTGAAAGCAGAAATCGCCTGTGATAAACATCGTGCTGGTCAAACATCTATACCTTGTGATGAATTTTGCGTTGAGACACGGATAAAGTTGGCAGAACAGTTGAAAcgggaacaagaaaaattacgCCAACAAGAAGAGGCGAAAAATCGTGCAGAAGTTGAacaatttgaaaagaaattcaGCAAACGTAAATACAAAGAACGTAAGGTCGTCGTAGAGAAACCAAATAGGCAGATAAATTGGAAGTTATTAAGCATTTATGGTGGTATTATACTAGCAATCGTTTTAGCTATTGCTGTAGCTTTCTATGCCGATAGTTAA
Protein Sequence
MKNPPKINKLQISGNLEVDLKQPVQKIVLIPTSETEILTISKKMSVFSAKNEKMKGGSKSNQQKPNGATRFEEVHARHIAAAKKIVEKYSSSSDEEEEELNESKILDSLFKHYKSDGSRLGIQQALQQKTATFFENALHSGSATCLICIGSVRRADSIWTCKHCYCFFHLNCIRRWANDSIAQQKASTEQTSNEQGYYNNLGQFVPPKRKRPLHWSCPQCRKDYCLEEKPATYKCFCGKEENPRPAAFLLPHSCGEICGKNLQPTCGHTCMLLCHPGPCPPCSQYATTSCLCGQSQKKSVRCIDKEWKCDRKCKELLPCGEHRCKELCHKPNQCPPCTSTSLQPCECGAETKKRNCSELKWHCKKICGSKYSCGAHVCKRVCHSGSCGDCPLSLPRSCPCGKTQKIVPCIENIDPCGDTCQKLLSCGLHTCTQRCHRGECNLCLIITKKKCRCGIHEKELPCWKIFTCETKCKQMRDCGKHTCNKKCCDGRSCQQCDKICGKPLTCQKHKCQSVCHEGPCYPCNQQSQVNCRCGKTSKRVPCGRERTARVMCMELCRIPSKCHHPIKHRCHKNECPPCNQKCGQVNDTTGCLHICEAKCHAAVKVIKQNPINGGANVWHQSKQFEFKKQPHPPCEQLVKVTCIGGHEIAEWPCWNSKPTSCQRKCNRALRCGNHKCELICHAVPDLKDMKEQLGCARCQEGCNVSRPAGCEHACPRPCHAPPCNPCDKMIKNKCYCGLTQLIYKCSEYFRVEGTKEEIALTQERLKSCGNRCLKTFSCGHRCHTPCHPGKCPNPELCRKKVRIFCECKRLKAEIACDKHRAGQTSIPCDEFCVETRIKLAEQLKREQEKLRQQEEAKNRAEVEQFEKKFSKRKYKERKVVVEKPNRQINWKLLSIYGGIILAIVLAIAVAFYADS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2