Basic Information

Gene Symbol
nfxl1
Assembly
GCA_031772095.1
Location
CM062653.1:63652329-63655507[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 1.5 2.2e+04 -3.8 2.1 15 19 172 176 171 176 0.82
2 19 0.13 1.9e+03 -0.3 0.4 4 10 207 213 206 213 0.95
3 19 5.5e-09 7.9e-05 23.2 15.1 1 19 221 238 221 238 0.98
4 19 1.5 2.2e+04 -3.7 1.1 5 10 263 268 263 268 0.91
5 19 0.00011 1.6 9.5 16.3 1 19 274 293 274 293 0.96
6 19 0.9 1.3e+04 -3.0 0.8 6 10 318 322 317 322 0.91
7 19 3.2e-08 0.00047 20.8 12.6 1 19 328 346 328 346 0.99
8 19 1.3 1.9e+04 -3.5 0.4 1 8 371 377 371 378 0.59
9 19 7.5e-08 0.0011 19.6 10.6 1 18 381 398 381 399 0.96
10 19 0.22 3.2e+03 -1.0 0.5 1 5 408 412 408 417 0.75
11 19 2 2.9e+04 -5.0 2.3 5 10 422 427 422 427 0.91
12 19 0.0001 1.4 9.6 15.3 1 18 433 451 433 452 0.94
13 19 3.8e-08 0.00055 20.5 15.5 1 18 461 478 455 479 0.86
14 19 0.0079 1.1e+02 3.6 6.9 9 19 524 534 522 534 0.89
15 19 0.024 3.4e+02 2.0 5.5 3 11 547 555 537 556 0.83
16 19 0.89 1.3e+04 -3.0 1.4 6 10 616 620 615 620 0.88
17 19 5.8e-06 0.084 13.6 4.9 1 12 626 637 626 637 0.97
18 19 0.0058 84 4.0 15.7 3 18 666 681 665 682 0.93
19 19 0.0001 1.5 9.6 15.1 1 16 733 747 733 753 0.92

Sequence Information

Coding Sequence
ATGTCTGTTTTGTCTTCTAAAAACGAAAAGATGAAAGGAATCTCTAAGCCAAGCCAACAAAAGTCAAAAGGAGCAACTCGATTTGAAGAAGTACATGCCAGGAATATAGCTGCGGCAAAAAAAATAGTGGAAAAGTATTCTTCTAGTTCtgatgaagaagaagaggagcttaatgaatctaaaatattagATTCCCTATTTAAGCATTACCAATCGGACGATAGGCGCTCAGGACAAGCGCTACAACAAAAAACTGCTACGTTCTTCGAAAACGCGCTGCATTCGGGATCAGCAACTTGTTTAATTTGTATTGGTAGCGTGCGCCGAGCTGATTCGATATGGACTTGTaaacattgttattgtttcttCCATTTAAACTGTATACGACGATGGGCTAATGATAGTATTGCGCAGATGAAAGCATCATCTGAACAAACAGCCAATGAACAGGGTTATTACAACAATCTAGGTCAATTCGTACCGCCGAAGCGAAAGCGACCACTTCACTGGAGTTGTCCCCAGTGTCGCAAAGATTACAGTCTGGAGGAAAAGCCCGCCAACTATAAGTGTTTTTGCGGTAAAGAAGAAAATCCCCGTCCCGCACCATTTTTATTACCACATTCTTGTGGAGAAATATGCGGAAAAAATTTACAACCGGCATGTGGGCATACTTGTATGTTACTTTGCCATCCAGGTCCATGCCCGCCCTGTTCTCAATATGCCACTATCAGTTGCCTATGTGGTAACTCTAACAAAAAATCTGTACGATGTATAGATAAAGAGTGGAAGTGTGATAGAAAGTGTAAAGAACTACTTGCTTGTGGCGAACATCAATGTAAAGAATCATGTCATAAGCCCAATCAGTGTCCCCCATGTACCAGTACCAGTTTACAGACGTGCGAATGTGGTGCTGAGACGAAGAAACGAAATTGTTCTGAACTTAAATGGCATTGCAAAAAGGTTTGTGGATATAAATATTCATGTGGGGCACATGCATGTAAACGTGTATGTCACTCGGGTTCTTGTGGAGATTGCCCTTTAAGTTTACCACGTTCATGTCCATGTGGGAAAAacCAAAAAATCGTGCCCTGTATTGAAACCATTGATCCCTGTGGTGATACATGCCAAAAACTCTTATCGTGTGGGCTGCATACTTGCACGCAACGTTGCCATCGTGGTGAATGTAATTTGtgCTTAATTATAACCAAAAAGAGATGCCGCTGTGGCATACATGAAAAGGAATTgccgtgttggaaaacctttaCTTGTGAAACTAAATGTAAGCAAATGCGAGATTGCGGAAAACACACTTGTAACAAAAAGTGTTGTGATGGGCGCAACTGTCAACAATGTGATAAGATATGTGGAAAACCGCTTACTTGTCAAAAGCACAAGTGCCAGTCGGTGTGTCATGAAGGACCCTGTTATCCTTGTAATCAACAATCACAAGTCAATTGCCGATGTGGTAAAACATCAAAACGTGTCCCTTGTGGACGTGAACGTACAGCACGCGTCATGTGCATGGAATTATGCcgAATTCCTTCTAAATGTCACCATCCAATCAAACATCGCTGTCACAAAAATGAATGTCCACCGTGTCAACAAAAATGCGGACAGATAAATGATACCACTGGGTGTCAGCATATTTGCGAAGCTAAATGCCATGCCGCTGCTAAAGTCTTCAAACAAAATCAACTTAATGGAGCTGCAAATATTTGGCATCAAAGCAAGCAGTTTGAATTCAAAAAACTGCCACATCCCCCGTGTGAACAATTGGTTAAGGTTACTTGTATTGGTGGACATGAAATAGCTGAATGGCCTTGTTGGAATTCCAAACCGACATCCTGTCAACGCAAATGTAAACGGGAATTACGTTGTGGTAACCATAAATGTGATCTGATATGCCATTCGGTACCCGATTTGAACGATATGAAGGAGCAAATCGGCTGCGCCCGCTGCCAAGAGGGTTGCAATATACCGCGTCCACCGGGTTGTGAGCATGCTTGTCCACGGCCTTGCCATGCTCCGCCATGCAATCCATGTGACAAAATGATCAAAACCAAATGTTATTGTGGCATAACacaattaatatacaaatgttCAGAATATTTCAGAGAAGAAGGCACCAAAGAAGAAATCGCTTTAATACAAGAACGCTTAAAGAGCTGCGGAAACCGCTGCCTCAAAACGTTTTCCTGCGGTCATCGCTGTCATACACCATGCCATGCAGGCAAGTGCCCAAATCCGGAGTTGTGTCGTAAAAAAGTACGTATATTTTGTGAATGCAAACGTTTGAAAGCAGAAGTGGCTTGCGATAAACACCGCGCCGGACAAAAATCCATTCCTTGCGATGAGTTTTGTGTTGAGACACGTATGAAATTGGCAGAACAAGTAAAACGGGAAGAAGAAAAGCTGCGTCAACAAGAAGAGGCGAAAAATCGCGCTGAAGTCGAACAATTCGAGAAGCGATTTAACAAACGTAAATACAAAGAACGTAAAGTCGTTGTGGAAAAAACAAACAGCGAGATTAATTGGAAATCATTGAGCATTTATGGCGGTATTATAATCGCAATAGTTTTAGCTATTGCTGTAGCTTTCTATGCAGATAGTTAA
Protein Sequence
MSVLSSKNEKMKGISKPSQQKSKGATRFEEVHARNIAAAKKIVEKYSSSSDEEEEELNESKILDSLFKHYQSDDRRSGQALQQKTATFFENALHSGSATCLICIGSVRRADSIWTCKHCYCFFHLNCIRRWANDSIAQMKASSEQTANEQGYYNNLGQFVPPKRKRPLHWSCPQCRKDYSLEEKPANYKCFCGKEENPRPAPFLLPHSCGEICGKNLQPACGHTCMLLCHPGPCPPCSQYATISCLCGNSNKKSVRCIDKEWKCDRKCKELLACGEHQCKESCHKPNQCPPCTSTSLQTCECGAETKKRNCSELKWHCKKVCGYKYSCGAHACKRVCHSGSCGDCPLSLPRSCPCGKNQKIVPCIETIDPCGDTCQKLLSCGLHTCTQRCHRGECNLCLIITKKRCRCGIHEKELPCWKTFTCETKCKQMRDCGKHTCNKKCCDGRNCQQCDKICGKPLTCQKHKCQSVCHEGPCYPCNQQSQVNCRCGKTSKRVPCGRERTARVMCMELCRIPSKCHHPIKHRCHKNECPPCQQKCGQINDTTGCQHICEAKCHAAAKVFKQNQLNGAANIWHQSKQFEFKKLPHPPCEQLVKVTCIGGHEIAEWPCWNSKPTSCQRKCKRELRCGNHKCDLICHSVPDLNDMKEQIGCARCQEGCNIPRPPGCEHACPRPCHAPPCNPCDKMIKTKCYCGITQLIYKCSEYFREEGTKEEIALIQERLKSCGNRCLKTFSCGHRCHTPCHAGKCPNPELCRKKVRIFCECKRLKAEVACDKHRAGQKSIPCDEFCVETRMKLAEQVKREEEKLRQQEEAKNRAEVEQFEKRFNKRKYKERKVVVEKTNSEINWKSLSIYGGIIIAIVLAIAVAFYADS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2