Basic Information

Gene Symbol
ct
Assembly
GCA_000789215.2
Location
NW:1752477-1969741[-]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 1.5e-26 9.5e-23 79.5 0.0 3 71 1214 1283 1212 1289 0.94
2 3 7e-32 4.3e-28 96.6 0.0 3 77 1687 1762 1685 1764 0.96
3 3 9.8e-31 6.1e-27 92.9 0.0 3 76 1935 2009 1933 2012 0.96

Sequence Information

Coding Sequence
ATGCAGCCACAAGTGCCGCAAGCCGCTGGGACAGCCGATATGGATTTGACGGCTGTTCAATCGATGGATTGGTTTTTCAAAAAGGAGCAATTTTATCTATTGGCACAATTTTTACAACAGCGCGCTAATTTGGCGGATAAGGACGTCGACACCTTGAAGGATCAATTAACCACCAACACAGacaccagcaccaccaccaacacACAAGCTAACGCTAACAGCAGCGAAATACCGGCCGACATAGACGACTTGAGCGCAGCGGCCGCCATCGCACTTGCCGCCAACAGCAGCGCCTCCGCCACAGACAGCAACACAAGCATTACCACCACAAACACAACATCTACAACAATCCCACCAAGCACCAAACTGCTTTCGCCCACCAGCGCTGCATATAGCAGCAtagccgccgccgctgccgcggGCTTCAACAGTCCGAATAGCGCgcatcataataataacaacaacacaaaactgTTGAATAGCGTCGCTGCGGCGATAACATTACATCAGAACGGTGGCAATTTGTTGGCCGCCACAACGAATACACCCTCTCCCTCGCCGCCACTGTCCACAGACGGTTGTAGtattgccgctgccgctgcagctgctgccgcgTGTGGCAATAGCAGCGTTTCGCCGCTGAGCGCCGCCTTGAACGGCGTCAACGGTTGCCTCAATCCCAAGCTATTCTTCAATCACGCACAACAAATGATGATGGAAGCTGCGGCCGcagccgccgctgctgctgcagcagctgccgtacaacagcaacaatcgcCGCTGCACTCGCCACTGCATGCCGCGCCACATATAGACGACGACGATATGGATGAGGATGGCAGCCGCAGCGCTAGCGCAGTCGATGCTAGCAAATTGATCACCAGTCTCACAGCGGAAATGAAATTGGTGAAGCGCGTGCGCGACAGTGAGCATGCCGATGAGTTGGACGAGGAGGAGCGCGACTTGGATGCCGATGAGAATGCGAATGCGCGCAAGCGTAGTCACAATGCAACAAATCAAAAGGATCTGATGGAGCAGAGTGTTGATGCGAGCGTATGTGGTCAAAGAACTGATGATACTAGCCTAAATGTTAGCAGTAGCGATAGCAATAAAATAACTAGTTGTagtctaaacaaaaacaattgtgcaagaaaaacaaaagccaatGCGGATGGCGATGATTGCATTGATAATGCCGAtgctgttgatgatgatgaggatgGCGTTGATAATGACGATGAACATGCAATGTCCGCCGCGGAAGTCAAGCGCATGGAAATTGTTGGCGGTGAAAGTGGTGAGAGTGGGAAAGCCGATGCCACAATTGGTTACTACACTGGAAGTGCAACAATTAAGTCGCATGCGGTAGGAAACAATCATGCTGAACTATTAGCTGCCAAAGATAAAGAGATTAAAGCACTTATCGAAGAGGTACAACGCCTGCGCACACTCGAACAAGCACAACTCACACAAATACAACGACTTGAGGATCACTTAGAAGTGAAGCGTCAGCATATTATGCGCCTAGAAGCGCGTCTCGATAGCCAACAAATCAATGACGCGCACAACGAAGCGATCGCAGCCACcgccaacaacacaacaacagcaacagccacagTGAGCGCTGCAGCGCCCGCGACATGTGATGTTGTGCACGATGTtgacgatgatgatgaggatAATGAGGAAGTTGTTGACACCACTGCTGACGCTGATGCAGCGGTTGACAAAATTGAtttaaccacaacaacaacaagcgcaacaactGAGTCGCATGACGCCACAGAAGCTAGAGCTGATTTCGCCGCCGATCGCGAATGTGAGCAGTTCAATGCGGCGACGGAAGacgcaaatgcaacaacaaacacaacaacggcaacagcgacaaataacgacaacaacggcagcacaacaacaacaacagcagttgaaGCGACACAGCAAATGTCACAACAAGTTGGAGAGCTACAAATCAAAAAGGAAAATCACAGCCCACTCGATTTGGACGTGATTAGTCAGCAATCGGCCATAGCTGCTGCtgcagccgccgccgctgccgcttgCGCCAATGATCCGAACAAATTCCAGGAATTGCTGCTCGAGGGCACCAAAGCGTTGGCGGCCGCCGCCAATGCTGCCGAGGGCGCAGCCGTTCCAGCCAGCCAACTATTGACCAACGCAGACGCCGACGCTGACGCTGACGCCGACGCAGACGTCGACGATGTCGCGGccagtggcaacaacagcatAGCAAACGACGACGAAGACGAAGACATGAAGTCGCCTGCAACGAAACTTGCCGAATTGCCAAACAtgccaaaaataccaaaaatcgaaattgtcgATGACGACGATGATGCGGAAGCGCTTGGCGCCGACATGCCAGCGCACACCGACAATGAGTTGCTTGAGCGCGAAAGCTTAAAAACGGCTTACGACAATGTAACTGCGGAAACGCATGAAATCGCACAGCCGCCCACAATCGACGTGGATGCTTTGGAGACGGCTGGCAGCAATGACGCCAGCGCTGCCGTGCAGAAATCCGAATTGCAAGCGCTGCAACAACATGTTGCCGACTCCactgcagctgcagctgctgcagccgccgccgctgcgGCCGTTGCATGCTTCGACGATAATGTTGATGCCTTTGGCACTTTGCTGGGCGAAGAGTTGGTGAGCTCTTATTGGCGCGGCTTTAAAATGCCCACGTCTGCGCctaacagcagcagcggcagcaacagcagcggcggcgCTGTTTCCAATAAAATACCAAACGCCAATAATATGTTTGCCAATCAGTTGTCGCATCGTTTGCCGCCGCCGTTGCCACCACATCAGCACCACCTTGCCATGCACCATCACCAGCACGCAGCACTTATGCCGCATCACATGCAACAGCACCACCtgcaccaacagcaacaacaacagcagcagcaacaaaatgccGCCGCTACGCAGCAACATGGACCTTCGTCCACCGCGCTGCTCAGCCAATTAGTTAATTCCACATTCTCATCAACACCACCcacttcttgttcttcttcttcctcttctctACGTACAGATGGTCTGCTGCCACCACATCATCTACATCATGGCCACCATGCGCAGCAAGGCGATACGCGCGGCGCGTCagcaccgccgccgccgcccaTGCCGCCACATCATCACCTGCATCAGCCACACCTCAGCGCCGAGGCGCATCATAAGTCCAGCATGGAGGCGCTACACAGCGGCAACAATAGCAATCACGAGATATCAGCCAACGCAAACGCGTCACATGCGCAGGATGCACGCGATGAACAACACGCTGCGCTTAATGGCAGCGGTAAGTCGCTATTAgaggacaacaacaacacactttgCGGCACACCCAATGCTAATGCGTCCAGCGCCGCTGCCATGGCGGCCGCCGCAATGGCCGCACAACAACATCCACACCTGCCGCCCGGTTACTTGCATGCGCTACCATTCCAGTTTCAGGATCGCGGTCATTTCCGCTTCGCCGACGACTTACAGCTGCCGCCTGGCGCTTCGATGGCTGGCCGCCTCGGTGAATCGCTTATACCCAAAAGCGATCCAATGGAGGCTAAATTACAGGAAATGCTACGCTACAATATGGATAAGTATGCCAATCAACCGTTGGACACATTGCATATCTCGCGACGCATACGCGAGCTCTTGTCAGTGCACAATATCGGACAGCGACTGTTCGCCAAGTATATACTCGGCCTGTCACAGGGCACCGTGTCGGAGTTGTTGTCCAAACCGAAACCGTGGGATAAGCTGACCGAGAAGGGACGTGACAGCTATCGCAAAATGCACGCCTGGGGCTGTGATGATAACGCTGTGATGCTGCTCAAGTCGCTCATACCGAAGAAAGATTCTGGTTTGCCGCCGTATGGTGGACGCGAGGACTCCATGTCCGATGATCGCATCGCACACATACTCAATGAAGCATCGAGCATGATCAAGAATTCCACACCGGGCTCACTGCAACAGCAACTAAAAGAGGCCGAACAGCGACAGCTGCAACAGGAGCAACATCGGCGCTCGGCGCATGACGAGTCGCAGCACAGCAATGAGGATTCCAAGTCGCCGCATCCATTATGCACCTCGCCATTCTATAAGAGCAACAGCCAATTGAAGCAGGAGCAGGAGGCGGCTGCAGTGGCTGctgcacaacagcagcagcatcgcTTGCGTCAGGAGCAAGAGTTAACGCCCGACAAAATGGCGCGCATCTATCAGGAGTTTCTTATGCGTACGCCACGTGAAGCCGCCTTTCCCAGtcttCTGCTTTCGCCTTTTTTCAGCGCTGCCGGTGGCATGCCCAGCGGTTGTGGTCTGCCCAACATGATGGCAGCCGATGAGAATTTACGCCTCACTTACGAGCGTGAAATGGCcaaattgcaacagcaacagcaacaacagactgctgcagctgctgccgccgctaGTAGCTTGCCGAACTTCCCCAACTTCTCCAACTTGATGGCATTACAGCAGCAAGTGTTGAATGGCGCACAGGACCTAACGCTGACAAAGGATCCCAAAGACGCTATAAAGATCAATGGACAGCGTGCCATCGAGCACTCTAGCAACTCTATGGATTCACAGTGCggtaacagcaacagcaatacgGCCACCATGCCGGGTAGTAATAACATTGGCGGTGGCAATAACAATGCCAAAGACTTGCCGAACACCGACAGCTTGGATCGCCATTCCAGCGCCGGTATGCCATTGCATACGCGCAAGCTCGAAAGCAGTGGCAGTAGCCATACACCGGTGCCGCCAACAACCAGCAGCGCGGCAGTTTCCATGCACGGCGTTAGCAACTCCACTGCACCCAGTCCATTGAGCAATTCGATTTTGCCGCCCGCGATGACAGCCAATGACGACTTCTCCGCCACCGCAAGTCCCTTGCAGCGCATGGCATCTATCACGAACTCGTTAATTACACAGCCACCCGTCCCACCACACCACACACCACCGCAGCGTCCCACCAAAGCCGTCTTGCCACCAATCACACAACAGCAATTCGATATGTTCAATAACCTCAACACCGAGGACATAGTGCGACGCGTTAAAGAGGCCCTTTCGCAATACTCCATCTCGCAGCGTCTCTTTGGCGAATCAGTACTCGGTCTCTCGCAGGGCTCTGTCTCCGATTTACTGGCACGCCCCAAACCCTGGCATATGTTGACACAAAAGGGACGTGAACCCTTCATACGCATGAAAATGTTTCTTGAAGACGAGAATGCTGTACATAAATTAGTCGCTAGCCAATACAAGATTGCGCCAGAAAAGCTGATGCGTACCGGCAGTTATAGCGGCACACCACAGATACCGCAAGGACTGGCCAGTAAGATTGGCGCTTCGCTACCGATGCAAAAAATGATGAACGAATTGAAACTTCAGGAACCAACACAAGCCCAGCATATCATGCAACAAATGCAAGCCGCTGCCATGTCTGCCGCAatgcaacaacatcagcagcaagcacaaagccaacaacagcatgctgcagctgctgccgtACAAGCAGCACAGGCCGCTGCCGCCGCACAAGCGGCACACCACCAAAGCATGTTGTTGACTTCACCCGGACTGCCACCACAGCACGCTATTAGTCTGCCACCTACCGGTGCCGCTGGCAGTGCTGCTGGTCCGGGCACACCTGGTAACGATAAGAAGCCAATGATGATGCCAATACATTCGCCGCATCAAGCGAACGCAATGCGCAGCATGCACCAACATATGTCGCCGACCGTTTACGAAATGGCGGCGCTTACTCAGGATCTTGATACACAAGTGATAACCACGAAAATCAAAGAAGCTCTACTCGCCAACAATATCGGCCAAAAGATCTTTGGCGAAGCTGTGCTTGGACTATCGCAAGGCTCCGTCTCAGAGTTACTCAGCAAACCAAAGCCATGGCACATGCTCTCCATTAAGGGGCGTGAACCGTTCATACGCATGCAATTGTGGCTATCCGATGCTAATAATGTTGAACGCCTGCAGGTGATTAAGAACGAAAGACGTGAGGCTAGCAAACGACGCCGTTCAACCGGGCCCAACCAACAGGATAACAGTTCGGATACATCCAGCAATGACACCAACGACTTTTACACCAGCTCGCCCGGTCCCGGCTCGGTGGGCTCTTCCGTTAGCGGCGCACCACCGAATAAAAAGCAACGTGTACTCTTTTCCGAAGAGCAGAAGCAAGCTTTACGTTTAGCTTTCGAACTCGATCCATATCCAAATGTGGCCACTATCGAATTTCTTGCCAATGAGCTCGGTCTCGCTACGCGCACCATCACGAATTGGTTCCACAATCACCGCATGCGTCTTAAGCAACAGGTGCCACACAATCAGCCCGGTGCCGACAATCCAATACCCAGTCGCGAGAACACCAATTCAACGCCTTTCGATCCCGTCCAATTCCGCATTCTGCTACAGCAGCGTCTACTCGAACTGCACAAAGAACGCATGGGACTGAGTGGCGCACCAACGCTACCATACCCACCCTACTTCGCCGCTGCAGCGTTACTCGGACGCAGCTTAGCTGGCATGCCCGGCGCCGCTGCCGCCGCAGCCGCTGCAGCTGCCAGTGCTGGCGGCGAGCCCGACCTGCACGCGCTCAATCAAGCTTTTAAAGAACAAATGCGTGGACTTGATCTCTCGATGAGCTCTTTGAAACGTGAGCGCAGCGTCGACTATGACGACGAACTCGACGAGAGTCATCTCAGCGACAATGAGTCGCTAGACGGTGTCGATGGCGCTGTCGATGACAAATCACTCAGCGGCGATTACAAAGACGGCGGCTCCAGCACGCCACGCAGCACGCCACTCTCCAACGCAGCCAGCTACTTACTGGGTGGACTGAATGCAAATATGCGCAGTTCACGACGCAAACCAGCTGCACCACAATGGGTCAATCCCGCCGGTCCAAGCCTAAGCACCGATACAAATGGCATTGCGGGCGCGACAATGGCAACAGCAGCTGGCATGCCACAATCAACAGCCGCACAAGAACGCATCATCAATGGTGTTTGCGTAATGCAACCGTCCGATTTTAATCGCAGTGAAGCTGACGAAAACGCCGATGTCAATACGGAAGCGCACAAACATACCGAAGTAAGCGAGAACGACGTGGAGCAGCAGCGTTTCCTGGAACCGGAAGTGCGCATAAAACAGGAGCAGGAAGATTGTGACAGCGACACTGAGGCAACGCCGCTCTCAACAACGGCGCCAACAAGCGAAGAGAAGCTAAAAGTCATCAGCGAAGACAAGTTGCGCATGGTGCGCCTACAGCGGCACAGTCACGAAGACGAAGTCGCGGCGCTCGGCGTGCCGACAACGAACACAACAGCGCCAACAACCACAGGCGCAGCAAGCGTGTGGAATTATTAA
Protein Sequence
MQPQVPQAAGTADMDLTAVQSMDWFFKKEQFYLLAQFLQQRANLADKDVDTLKDQLTTNTDTSTTTNTQANANSSEIPADIDDLSAAAAIALAANSSASATDSNTSITTTNTTSTTIPPSTKLLSPTSAAYSSIAAAAAAGFNSPNSAHHNNNNNTKLLNSVAAAITLHQNGGNLLAATTNTPSPSPPLSTDGCSIAAAAAAAAACGNSSVSPLSAALNGVNGCLNPKLFFNHAQQMMMEAAAAAAAAAAAAAVQQQQSPLHSPLHAAPHIDDDDMDEDGSRSASAVDASKLITSLTAEMKLVKRVRDSEHADELDEEERDLDADENANARKRSHNATNQKDLMEQSVDASVCGQRTDDTSLNVSSSDSNKITSCSLNKNNCARKTKANADGDDCIDNADAVDDDEDGVDNDDEHAMSAAEVKRMEIVGGESGESGKADATIGYYTGSATIKSHAVGNNHAELLAAKDKEIKALIEEVQRLRTLEQAQLTQIQRLEDHLEVKRQHIMRLEARLDSQQINDAHNEAIAATANNTTTATATVSAAAPATCDVVHDVDDDDEDNEEVVDTTADADAAVDKIDLTTTTTSATTESHDATEARADFAADRECEQFNAATEDANATTNTTTATATNNDNNGSTTTTTAVEATQQMSQQVGELQIKKENHSPLDLDVISQQSAIAAAAAAAAAACANDPNKFQELLLEGTKALAAAANAAEGAAVPASQLLTNADADADADADADVDDVAASGNNSIANDDEDEDMKSPATKLAELPNMPKIPKIEIVDDDDDAEALGADMPAHTDNELLERESLKTAYDNVTAETHEIAQPPTIDVDALETAGSNDASAAVQKSELQALQQHVADSTAAAAAAAAAAAAVACFDDNVDAFGTLLGEELVSSYWRGFKMPTSAPNSSSGSNSSGGAVSNKIPNANNMFANQLSHRLPPPLPPHQHHLAMHHHQHAALMPHHMQQHHLHQQQQQQQQQQNAAATQQHGPSSTALLSQLVNSTFSSTPPTSCSSSSSSLRTDGLLPPHHLHHGHHAQQGDTRGASAPPPPPMPPHHHLHQPHLSAEAHHKSSMEALHSGNNSNHEISANANASHAQDARDEQHAALNGSGKSLLEDNNNTLCGTPNANASSAAAMAAAAMAAQQHPHLPPGYLHALPFQFQDRGHFRFADDLQLPPGASMAGRLGESLIPKSDPMEAKLQEMLRYNMDKYANQPLDTLHISRRIRELLSVHNIGQRLFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWGCDDNAVMLLKSLIPKKDSGLPPYGGREDSMSDDRIAHILNEASSMIKNSTPGSLQQQLKEAEQRQLQQEQHRRSAHDESQHSNEDSKSPHPLCTSPFYKSNSQLKQEQEAAAVAAAQQQQHRLRQEQELTPDKMARIYQEFLMRTPREAAFPSLLLSPFFSAAGGMPSGCGLPNMMAADENLRLTYEREMAKLQQQQQQQTAAAAAAASSLPNFPNFSNLMALQQQVLNGAQDLTLTKDPKDAIKINGQRAIEHSSNSMDSQCGNSNSNTATMPGSNNIGGGNNNAKDLPNTDSLDRHSSAGMPLHTRKLESSGSSHTPVPPTTSSAAVSMHGVSNSTAPSPLSNSILPPAMTANDDFSATASPLQRMASITNSLITQPPVPPHHTPPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGSYSGTPQIPQGLASKIGASLPMQKMMNELKLQEPTQAQHIMQQMQAAAMSAAMQQHQQQAQSQQQHAAAAAVQAAQAAAAAQAAHHQSMLLTSPGLPPQHAISLPPTGAAGSAAGPGTPGNDKKPMMMPIHSPHQANAMRSMHQHMSPTVYEMAALTQDLDTQVITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQVIKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSSVSGAPPNKKQRVLFSEEQKQALRLAFELDPYPNVATIEFLANELGLATRTITNWFHNHRMRLKQQVPHNQPGADNPIPSRENTNSTPFDPVQFRILLQQRLLELHKERMGLSGAPTLPYPPYFAAAALLGRSLAGMPGAAAAAAAAAASAGGEPDLHALNQAFKEQMRGLDLSMSSLKRERSVDYDDELDESHLSDNESLDGVDGAVDDKSLSGDYKDGGSSTPRSTPLSNAASYLLGGLNANMRSSRRKPAAPQWVNPAGPSLSTDTNGIAGATMATAAGMPQSTAAQERIINGVCVMQPSDFNRSEADENADVNTEAHKHTEVSENDVEQQRFLEPEVRIKQEQEDCDSDTEATPLSTTAPTSEEKLKVISEDKLRMVRLQRHSHEDEVAALGVPTTNTTAPTTTGAASVWNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2