Basic Information

Gene Symbol
ct
Assembly
GCA_016617805.2
Location
NC:68074327-68289962[+]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 1.5e-26 1.1e-22 79.5 0.0 3 71 1211 1280 1209 1286 0.94
2 3 7e-32 4.8e-28 96.6 0.0 3 77 1684 1759 1682 1761 0.96
3 3 9.8e-31 6.8e-27 92.9 0.0 3 76 1932 2006 1930 2009 0.96

Sequence Information

Coding Sequence
ATGCAGCCACAAGTGCCGCAAGCCGCTGGGACAGCCGATATGGATTTGACGGCTGTTCAATCGATGGATTGGTTTTTCAAAAAGGAGCAATTTTATCTATTGGCACAATTTTTACAACAGCGCGCTAACTTGGCGGATAAGGACGTTGACACCTTGAAGGATCAATTAACCACCAACACAGACACCAGCACCACCACCAACACACAAGCTAACGCTAACAGCAGCGAAATACCGGCTGACATAGACGACTTGAGCGCAGCGGCCGCCATTGCACTTGCCGCCAACAGCAGCGCCTCCGCCACAGACAGCAACACAAGCATTACCACCACAAACACAACATCTACAACAAtcccaccaagcaccaaactgCTTTCGCCCACCAGCGCTGCATACAGCAGCATagccgccgccgctgccgcGGGCTTCAACAGCCCGAATAGCGTGCatcataataataacaacaacacaaaactgTTGAATAGCGTCGCTGCGGCGATAACATTACATCAGAACGGTGGCAATTTGTTGGCCGCCACAACGAATACGCCCTCTCCCTCGCCGCCACTGTCCACAGACGGTTGTAGtattgccgctgccgctgcagCTGCTGCCGCGTGTGGCAATAGCAGCGTTTCGCCGCTGAGCGCCGCCTTGAACGGCGTCAACGGTTGCCTCAATCCCAAGCTATTCTTCAATCACGCACAACAAATGATGATGGAAGCAGCGGCCGCagccgccgctgctgctgcagcaGCTGCCGTACAACAGCAACAGTCGCCGCTGCACTCGCCGTTGCATGCCGCGCCACATATAGACGACGATGATATGGATGAGGATGGCAGTCGCAGCGCTAGCGCAGTCGATGCTAGCAAATTGATCACCAGTCTCACAGCGGAAATGAAATTGGTGAAGCGCGTGCGCGACAATGAGCATGGCGATGAGTTGGACGAGGAGGAGCGCGACTTGGATGCCGATGAGAATGCGAATGCGCGCAAGCGTACTCACAATGCAACAAATCAAAAGGATCTGATGGAGCAGAGTATTGATGCGAGCGTATGTGGTCAAAGAACTGATGATACTAGCCTAAATGTTAGCAGTAGCGATAGCAATAAAGTAACTAGTTGTagtctaaataaaaataattgtgcaagaaaaacaaaagccaATGCGACTGGCGATGATTGCATTGATAATGCAGATGCTGTTGATGATGATGAGGATGGCGTTGATAATGACGATGAACATGCAATGTCCGCCGCGGAAGTCAAGCGCATGGAAATTTATGGCGGTGAAAGTGGTGAGAGTGGGAAAACCGATGCCACAATTGGTTACTACAGTGGAAGTGCAACAATTAAGTCGCATGCGGTAGGAAACAATCATGCTGAACTATTAGCTGCCAAAGATAAAGAGATTAAAGCACTTATCGAAGAGGTACAACGCCTGCGCACACTCGAACAAGCACAACTCACACAAATACAACGACTTGAGGATCACTTAGAAGTGAAGCGTCAGCATATTATGCGCCTAGAAGCGCGTCTCGATAGCCAACAAATCAATGACGCGCACAACGAAGCGATCGCAGCCACCGCCAacaacacaacagcaacaacagccgcAGTTAACGCTGCAGCGCCCGCGACATGTGATGTTGTGCACGAAGTTGACGATGATGATGAGGATAATGAGGAAGTTGTTGACACCACTGCTGACGCTGATGCAGCGGTTGACAAAATTGATTTaaccactacaacaacagctgcaacaAGTGAGTTGCATGACGCCACAGAAGCTAGAGCTGATTTCGCCGCTGATCGCGAATGTGAGCAGTTCAATGCGGCGACGGAAGacgcaaatgcaacaacaagcacaacaacaacggcaaccgCGACAAATAAcgacagcacaacaacaacaacagcagttgaAACGACACAGCAAATGTCGCAACAAGTTGGCGAGCTACAAATCAAAAAGGAAAATCACCCACTCGATTTGGACGTGATTAGTCAGCAATCGGCCATAGCTGCTGCAGCagccgccgccgctgccgctTGCGCCAATGATCCGAACAAATTCCAGGAATTGCTGCTCGAGGGCACCAAAGCGTTGGCGGCCGCCGCCAATGCTGCCGAGGGAGCAGCCGTTCCAGCCAGCCAACTATTGACCAACGCAGACGGCGACGCTGACGCCGACGTCGACGATGTCGAGGCCAGTGGCAACAACAGCATAGcaaacgacgacgacgacgacgacatgAAGTCGCCTGCAACGAAACTTGCCGAATTGCCAAACAtgccaaaaataccaaaaatcgAAATTGTCGATGACGACGATGATGCGGAAGCGCTTGGCGCCGACATGCCAGCGCACGCCGACAATGAGTTGCCTGAACGCGAAAGCTTAAAAACGGCTTACGACAATGTAACTGCCGAAACGCATGAAAGCGCACAGCCGCCCACAATCGACGTGGATGCTTTGGAGACGGCTGGCAACAATGACGCCAGCGCTGCCGTGCAGAAATCCGAATTGCAAGCGCTGCAACAACATGTTGCCGACTCTACTGCAGCTGCAGCTGCTGCAGCCGCCGCCGCTGCGGCCGTTGCATGCTTCGACGATAATGTTGATGCCTTTGGCACATTGCTGGGCGAAGAGTTGGTGAGCTCTTATTGGCGCGGCTTCAAAATGCCTACGTCCGCGCCTAACAgtagcagcggcagcagcagcagcgccgGCGGCGGCGCTGTTTCCAATAAAATGCCAAACGCCAATAATATGTTTGCCAATCAGTTGTCGCATCGTTTGCCGCCGCCGTTGCCACCACATCAGCACCACCTTGCCATGCACCATCACCAGCACGCAGCACTTATGCCACATCACATGCAACAGCACCACCTGcaccaacagcagcaacaacaacaacagcagcagcaacaaaatgccGCCGCTACGCAGCAACATGGACCTTCGTCCACCACGCTGCTCAGCCCATTAGTTAATTCCACATTCTCATCAACACCACCCActtcttgttcttcttcttcctcttctctACGTACAGATGGTCTGCTGCCACCACATCATTTGCATCATGGCCATCATGCGCAGCAAGGCGACACACGCGGCGCGTCcgcaccgccgccgccgcccaTGCCGCCACATCATCACCTGCATCAGCCACACCTCAGCGCTGAGGCGCATCATAAGTCCAGCATGGAAGCGCTACACAGCGGCAACAATAGCAATCACGAGCTATCAGCCAACGCAAGCGCGTCACATGCGCAGGATGCACGCGATGAACAACACGCTGCGCTTAATGGCAGCGGTAAGTCGCTATTAgaggacaacaacaacacactgtGCGGCACACCCAATGCTAATGCGTCCAGCGCCGCCGCCATGGCGGCCGCCGCAATGGCCGCACAACAACATCCACACCTGCCGCCCGGTTACTTGCACGCGCTGCCATTCCAGTTTCAGGATCGCGGTCATTTCCGCTTCGCCGACGACTTACAGCTGCCGCCTGGCGCTTCGATGGCTGGCCGCCTCGGTGAATCGCTTATACCCAAAAGCGATCCAATGGAGGCTAAACTACAGGAAATGCTACGTTACAATATGGATAAGTACGCCAATCAGCCGTTGGACACATTGCATATCTCGCGACGCATACGCGAGCTGTTGTCAGTGCACAATATTGGACAGCGGCTGTTCGCCAAGTATATACTCGGCCTGTCGCAGGGCACCGTGTCGGAGTTGTTGTCCAAACCGAAGCCGTGGGATAAGCTGACCGAGAAGGGACGTGACAGCTATCGCAAAATGCACGCCTGGGGCTGTGATGATAACGCTGTGATGCTGCTCAAGTCGCTCATACCGAAGAAAGATTCTGGTTTGCCGCCGTATGGTGGACGCGAGGACTCCATGTCCGATGATCGCATCGCGCACATACTCAATGAAGCATCGAGCATGATCAAGAATTCCACACCGGGCTCACTGCAACAGCAACTGAAAGAGGCCGAACAGCGGCAGCTGCAACAGGAGCAACATCGACGCTCGGCGCATGACGAGTCGCAGCACAGCAATGAGGATTCTAAGTCGCCGCATCCATTATGCACCTCTCCATTCTATAAGAGCAACAGCCAATTGAAGCAGGAGCAGGAGGCGGCGGCAGTGGCTGCtgcacaacagcagcagcatcgCTTGCGTCAGGAGCAAGAGTTAACGCCCGACAAAATGGCGCGCATCTATCAGGAGTTTCTTATGCGTACGCCACGTGAAGCCGCCTTTCCCAGtcttCTGCTTTCGCCTTTTTTCAGCGCTGCCGGTGGCATGCCCAGCGGTTGTGGTCTGCCCAACATGATGGCAGCCGATGAGAATTTACGCCTCACTTACGAGCGTGAAATGGCCaaattgcaacagcaacaacaacaacagactgCTGCAGCCGCTGCCGCCGCTAGTAGCTTGCCGAACTTCCCCAACTTCTCCAACTTGATGGCATTACAGCAGCAAGTGTTGAATGGCGCACAGGACCTAACGCTGACAAAGGATCCCAAAGACGCTATAAAGGTCAATGGACAGCGTGCCATCGAGCACTCCAGCAACTCTATGGATTCACAGTGCggtaacagcaacagcaatacgGCCACCATGCCGGGTAGTAATAACATCGGCGGTGGCAATAACAATGCCAAAGACTTGCCGAACACCGACAGCTTGGATCGCCATTCCAGCGCCGGTATGCCATTGCATACGCGCAAGCTCGAAAGCAGTGGCAGTAGCCATACACCGGTGCCGCCAACAACTAGCAGCGCGGCAGTTTCCATGCACGGCGTTAGCAACTCCACTGCACCCAGTCCATTGAGCAATTCGATTTTGCCGCCCGCGATGACAGCCAATGATGACTTCTCCGCCACCGCAAGCCCCTTGCAGCGCATGGCATCTATCACGAACTCGTTAATCACACAGCCACCCGTCCCACCACACCACACACCACCGCAGCGTCCCACCAAAGCCGTCTTGCCACCAATCACACAACAGCAATTCGATATGTTCAATAACCTCAACACCGAGGACATAGTGCGACGCGTTAAAGAGGCCCTTTCGCAGTACTCCATCTCACAGCGTCTCTTTGGCGAATCAGTGCTCGGTCTCTCGCAGGGCTCTGTCTCCGATTTACTGGCACGCCCCAAACCTTGGCATATGTTGACACAAAAGGGACGTGAACCCTTCATACGCATGAAAATGTTTCTTGAAGACGAGAATGCTGTACATAAATTAGTCGCCAGCCAATACAAGATTGCGCCAGAAAAGCTGATGCGTACTGGCAGTTATAGCGGCACACCACAGATACCGCAAGGACTGGCCAGTAAGATTGGCGCTTCGCTACCGATGCAAAAAATGATGAACGAATTGAAACTACAGGAACCAACACAAGCCCAGCATATCATGCAACAAATGCAAGCCGCTGCCATGTCTGCCGCAATgcaacaacaccagcagcaaGCACAAAGCCAACAACAGCATGCTGCAGCTGCTGCCGTACAAGCAGCACAGGCCGCTGCCGCCGCACAAGCGGCACACCACCAAAGCATGTTGTTGACTTCACCCGGACTGCCACCACAGCACGCCATTAGTCTGCCACCTACCGGTGCCGCTGGCAGTGTTGCTGGTCCGGGCACACCTGGTAACGATAAGAAACCAATGATGATGCCAATACATTCGCCGCATCAAGCGAACGCAATGCGCAGCATGCACCAACATATGTCGCCGACCGTTTACGAAATGGCGGCGCTTACTCAGGATCTTGATACACAAGTGATAACCACGAAAATCAAAGAAGCTCTACTCGCCAACAATATCGGCCAAAAGATTTTTGGCGAAGCTGTGCTCGGACTATCGCAAGGCTCCGTTTCAGAGTTACTCAGCAAACCAAAGCCATGGCACATGCTCTCCATTAAGGGGCGTGAACCGTTTATACGCATGCAATTGTGGCTATCCGATGCTAATAATGTTGAACGCCTGCAGGTGATTAAGAACGAAAGACGTGAGGCTAGCAAACGACGCCGTTCAACCGGGCCCAACCAACAGGATAACAGTTCGGATACATCCAGCAATGACACCAACGACTTTTACACCAGCTCGCCCGGTCCCGGCTCGGTGGGCTCATCCGTTAGCGGCGCACCACCGAATAAAAAGCAACGTGTACTCTTTTCCGAAGAGCAGAAGCAAGCTTTGCGTTTAGCTTTCGAACTCGATCCATATCCAAATGTGGCCACTATCGAATTTCTTGCCAATGAGCTCGGTCTCGCCACGCGTACTATCACCAATTGGTTCCACAATCACCGCATGCGTCTTAAACAGCAGGTGCCACACAATCAGCCCGGTGCCGACAATCCAATACCCAGTCGCGAGAACACCAATGCAACGCCTTTCGACCCCGTCCAATTCCGCATTCTGCTACAGCAGCGTCTACTCGAACTGCACAAAGAACGCATGGGACTGAGTGGCGCACCAACGCTACCATACCCACCCTACTTCGCCGCTGCAGCGCTACTCGGACGCAGCTTAGCTGGCATGCCCGGCGCCGCTGCCGCCGCAGCCGCTGCAGCTGCCAGTGCTGGCGGCGAGCCCGACCTACACGCGCTCAATCAGGCTTTTAAAGAACAAATGCGTGGACTTGATCTCTCGATGAGCTCTTTAAAACGTGAACGCAGCGTCGACTATGACGACGAACTCGACGAGAGTCATCTCAGCGACAATGAGTCGCTAGACGGTGTTGATGGCGCTGCCGATGACAAATCCCTCAGCGGCGATTACAAAGACGGCGGCTCCAGCACGCCACGCAGCACGCCACTCTCCAGCGCAGCCAGCTACTTACTGGGTGGACTGAATGCAAATATGCGCAGTTCACGACGCAAACCAGCTGCACCACAATGGGTCAATCCCGCCGGTCCAAGCCTAAGCACCGATATAAATGGCATTGCGGGCGCGACAATGGCAACAGCAGCTGGCATGCCACAATCAACAGCCGCACAAGAACGCATCATCAATGGTGTTTGCGTTATGCAACCGTCCGATTTCAATCGCAGTGAAACTGACGAAAACGCCGATGTCAATACGGAGGCGCACAAACATACCGAAGTGGGCGAGAATGACGTGGAGCAGCAGCGTTTCCTGGAACCGGAGGTGCGCATAAAACAGGAGCAGGAAGATTGTGACAGCGACACTGAGGCAACGCCGCTCTCAACAACGACGCCAACAAGCGAAGAGAAGCTAAAAGTGATCAGCGAAGACAAGTTGCGCATGGTGCGCCTACAGCGGCACAGTCACGAAGACGAGGTCGCGGCACTCGGCGTGCCGACAACGAACGCAACAGCGCCAACAACCACAGGCGCAGCAAGCGTGTGGAATTATTAA
Protein Sequence
MQPQVPQAAGTADMDLTAVQSMDWFFKKEQFYLLAQFLQQRANLADKDVDTLKDQLTTNTDTSTTTNTQANANSSEIPADIDDLSAAAAIALAANSSASATDSNTSITTTNTTSTTIPPSTKLLSPTSAAYSSIAAAAAAGFNSPNSVHHNNNNNTKLLNSVAAAITLHQNGGNLLAATTNTPSPSPPLSTDGCSIAAAAAAAAACGNSSVSPLSAALNGVNGCLNPKLFFNHAQQMMMEAAAAAAAAAAAAAVQQQQSPLHSPLHAAPHIDDDDMDEDGSRSASAVDASKLITSLTAEMKLVKRVRDNEHGDELDEEERDLDADENANARKRTHNATNQKDLMEQSIDASVCGQRTDDTSLNVSSSDSNKVTSCSLNKNNCARKTKANATGDDCIDNADAVDDDEDGVDNDDEHAMSAAEVKRMEIYGGESGESGKTDATIGYYSGSATIKSHAVGNNHAELLAAKDKEIKALIEEVQRLRTLEQAQLTQIQRLEDHLEVKRQHIMRLEARLDSQQINDAHNEAIAATANNTTATTAAVNAAAPATCDVVHEVDDDDEDNEEVVDTTADADAAVDKIDLTTTTTAATSELHDATEARADFAADRECEQFNAATEDANATTSTTTTATATNNDSTTTTTAVETTQQMSQQVGELQIKKENHPLDLDVISQQSAIAAAAAAAAAACANDPNKFQELLLEGTKALAAAANAAEGAAVPASQLLTNADGDADADVDDVEASGNNSIANDDDDDDMKSPATKLAELPNMPKIPKIEIVDDDDDAEALGADMPAHADNELPERESLKTAYDNVTAETHESAQPPTIDVDALETAGNNDASAAVQKSELQALQQHVADSTAAAAAAAAAAAAVACFDDNVDAFGTLLGEELVSSYWRGFKMPTSAPNSSSGSSSSAGGGAVSNKMPNANNMFANQLSHRLPPPLPPHQHHLAMHHHQHAALMPHHMQQHHLHQQQQQQQQQQQQNAAATQQHGPSSTTLLSPLVNSTFSSTPPTSCSSSSSSLRTDGLLPPHHLHHGHHAQQGDTRGASAPPPPPMPPHHHLHQPHLSAEAHHKSSMEALHSGNNSNHELSANASASHAQDARDEQHAALNGSGKSLLEDNNNTLCGTPNANASSAAAMAAAAMAAQQHPHLPPGYLHALPFQFQDRGHFRFADDLQLPPGASMAGRLGESLIPKSDPMEAKLQEMLRYNMDKYANQPLDTLHISRRIRELLSVHNIGQRLFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWGCDDNAVMLLKSLIPKKDSGLPPYGGREDSMSDDRIAHILNEASSMIKNSTPGSLQQQLKEAEQRQLQQEQHRRSAHDESQHSNEDSKSPHPLCTSPFYKSNSQLKQEQEAAAVAAAQQQQHRLRQEQELTPDKMARIYQEFLMRTPREAAFPSLLLSPFFSAAGGMPSGCGLPNMMAADENLRLTYEREMAKLQQQQQQQTAAAAAAASSLPNFPNFSNLMALQQQVLNGAQDLTLTKDPKDAIKVNGQRAIEHSSNSMDSQCGNSNSNTATMPGSNNIGGGNNNAKDLPNTDSLDRHSSAGMPLHTRKLESSGSSHTPVPPTTSSAAVSMHGVSNSTAPSPLSNSILPPAMTANDDFSATASPLQRMASITNSLITQPPVPPHHTPPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGSYSGTPQIPQGLASKIGASLPMQKMMNELKLQEPTQAQHIMQQMQAAAMSAAMQQHQQQAQSQQQHAAAAAVQAAQAAAAAQAAHHQSMLLTSPGLPPQHAISLPPTGAAGSVAGPGTPGNDKKPMMMPIHSPHQANAMRSMHQHMSPTVYEMAALTQDLDTQVITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQVIKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSSVSGAPPNKKQRVLFSEEQKQALRLAFELDPYPNVATIEFLANELGLATRTITNWFHNHRMRLKQQVPHNQPGADNPIPSRENTNATPFDPVQFRILLQQRLLELHKERMGLSGAPTLPYPPYFAAAALLGRSLAGMPGAAAAAAAAAASAGGEPDLHALNQAFKEQMRGLDLSMSSLKRERSVDYDDELDESHLSDNESLDGVDGAADDKSLSGDYKDGGSSTPRSTPLSSAASYLLGGLNANMRSSRRKPAAPQWVNPAGPSLSTDINGIAGATMATAAGMPQSTAAQERIINGVCVMQPSDFNRSETDENADVNTEAHKHTEVGENDVEQQRFLEPEVRIKQEQEDCDSDTEATPLSTTTPTSEEKLKVISEDKLRMVRLQRHSHEDEVAALGVPTTNATAPTTTGAASVWNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00080983;
90% Identity
iTF_00190473;
80% Identity
iTF_00193466;