Basic Information

Gene Symbol
ct
Assembly
GCA_031772095.1
Location
CM062650.1:13451285-13481324[-]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 1.8e-26 1.8e-22 79.8 0.0 3 71 774 843 772 849 0.94
2 3 8.3e-32 8e-28 96.9 0.0 3 77 1247 1322 1245 1324 0.96
3 3 1.2e-30 1.1e-26 93.3 0.0 3 76 1495 1569 1493 1572 0.96

Sequence Information

Coding Sequence
ATGCAACAGTCAACGTTCATGCCTATAATATATGCACGTATGCGAATTTCGCGTGTCAGCCATGCATTAGTTAAAAGTCGCCGCAGTAAACCAATAATCACGCATGTGCAACAACTAATTAAAGCACTTATCGAAGAGGTACAACGCCTGCGCACACTCGAACAAACACAACTCACACAAATACAACGACTTGAAGATCACTTAGAAGTGAAGCGTCAGCATATAATGCGCCTAGAATCACGTCTCGATAGGGAACAAATCAATGCTGCGCATAGTGAAGCCAACGCATTAGTAGAAACAGCAACAGTTACCGCTGCTGCGCCAGCGATACACAATGTTGTACACAATgtcgatgatgatgatgatgatgaggatAGTGCAGCAGTAGTTGACGCTACAGCTGACGCTGAGGCAGCGGTTGACAAAATTGatttaaccacaacaacagcaacaactgagTCGAATGACGCCACAGATGCTAAAGCTGATTTCGCAGCTGATCGCGAATGTGAGCAGTTGAATGCAGCGACAGCAGTGGTAGAAgatgaaaatgcaacaacaaacacaacaacagcgacacaTGATGAAAACAATggcagcacaacaacagcaacaacacttgAAACAACACAAGTTGACGAGCTACAAATCAAAAAGGAAAATCACAGCAGCCCACTCGATTTGGACGTGATTAGTCAGCAATCggctattgctgctgctgcagccgccgccgctgccgcgTGCGCCAATGATCCGAACAAATTCCAGGAATTACTGCTTGAGGGCACCAAAGCGTTGGCGGCCGCCGCCAATGCTGCCGAGGGAGCAGCCGTTCCAGCCAGCCAAGAAATGAATAATGCAGACGCCGACGCCGACGCCGATGGCGACGAAATCGCGCACAGTGGCAACAACAGTATAGtaaacgacgacgacgatgaagCGTCGCCTGCAACGCAAATTGCAGAATTGTCTGACatgccaaaaataccaaaaatcgaaattgtcgatgacgatgacgatgcCGAAGCGCTTAGCGTCAACATGCCGGCGCACGCCGATGCTGAGTCACTTGAGCGCGAAAGTCACACGGCATATGACAATGCAACTGCCGAGGTGAACGCTGACATGCAGCCGCCCACAATCGACGTGGACGCTTTGGAGCCTGCTGGTAGCAATGAAACCCTGCAGAAATCCGAATTGCAAGCGCTGCAACAGCATGTTGCCGATTCcactgcagctgctgctgccgccgccgctgccgctgcAGCAGTCGCCTGCTTCGATGACAATGTTGATGCCTTTGGCACATTGCTGGGCGAAGAGTTGGTGAGCTCTTATTGGCGCGGCTTCAAAATGCCCACGCCTACCACTAATAAtagcggcagcaacagcaacagcagcggcgCCAGCGCCATTACCAATAAAATGCCAAACGCCAATAATATGTTTGCCAATCAGTTGTCGCATCGTTTGCCGCCACCGCCGTTGCCACCACATCAGCACCATCTTGCTATGCATCAACACCAGCACTCCACATTTATGCCACATCACATGCAACAGCATCACCtgcaccaacaacagcagcagcaacaacaacaccaacagcagcagcaacaaaatgcCGCCGCTACGCAGCAACATGGACCTTCGTCCACTGCGCTGCTTAGCCAATTAGTTAATTCCACATTCTCATCAACACCAACCActtcttgttcttcttcttcctcctcTCTACGCACAGATGGCCTCCTGCCACCACCACATCATCTACATCATAGCCATCATGCGCAGCAAGGCGCCACAATTGGCGCAAcagcaccgccaccaccaccaatgCCGCCACATCATCACCTGCATCAGCCACATCTCAGCGCCGCCGAGGTCCATCACAAGTCCAACATGGATGCGTTGCAcagcggcaacaacagcaatcacgAGTTATCAGCCAATACAAGCGCGTCCCATGCGCAGGATGCACGCGATGAACAACACGCTGCGCTCAACGGCAGCGCCAAGTCGCTCATGGAGGACAACAATAACACATTATGCGGCACACCCAATGCGAATGCGAACAGCGCCGCCGCCATGGCTGCCGCTGCAATGGCTGCACAACAGCATCCACACCTGCCACCCGGCTACTTGCATGCGCTACCATTCCAGTTTCAGGAACGCGGTCATTTCCGCTTCGCCGACGATTTGCAGTTGCCGCCTGGCGCTTCGATGGCTGGACGCCTCGGTGAATCGCTTATACCGAAAAGCGATCCAATGGAGGCTAAACTGCAGGAAATGCTACGCTACAATATGGATAAGTATGCCAATCAGCCGCTGGACACATTGCATATCTCGCGACGCATACGTGAACTGTTGTCGGTGCACAATATCGGACAGCGGCTGTTCGCCAAGTACATACTCGGCCTGTCGCAGGGCACCGTCTCGGAATTGTTGTCTAAACCGAAGCCGTGGGATAAGCTGACCGAGAAGGGACGTGACAGCTATCGCAAAATGCACGCCTGGGGCTGTGATGATAACGCTGTGATGCTGCTCAAATCGCTCATACCGAAGAAAGATTCTGGTTTGCCGCCATATGGTGGACGCGAAGACTCCATGTCCGATGATCGCATCGCACACATACTCAACGAAGCATCGAGCATGATCAAAAATTCCACACCGGGTTCACTGCAACAGCAATTGAAAGAAGCCGAACAGCGACAACTGCAACAGGAGCATCATCGGCGTTCAGCGCATGATGAGTCGCAGCACAGCAATGAGGATTCGAAATCGCCACATCCGCTCTGCACTTCGCCATTCTATAAGAGCAACAGCCAATTGAAGCAGGAACAGGAGGCGGCCGCAGCAGCTGcagcgcaacagcaacagcatcgCTTGCGGCAGGAGCAAGAGTTGACGCCCGACAAGATGGCGCGCATCTATCAGGAGTTTCTCATGCGTACGCCACGTGAAGCCGCCTTCCCCAGTCTTCTGCTTTCGCCTTTTTTCAGCGCGGCCGGTGGCATGCCCAGCGGTTGTGGGCTACCCAACATGATGGCTGCCGATGAGAATTTGCGCCTCACTTACGAGCGTGAAATGGCCaaattgcaacagcaacaacaacagcaaactgcTGCAGCCGCTGCCGCCGCTAGCAGCTTACCGAACTTCCCCAATTTCTCCAACTTGATGGCACTGCAACAGCAAGTGCTGAATGGCGCACAGGATCTCACACTGACGAAGGATCCCAAGGACGCTATAAAAGTAAATGGACAGCGCGCCATCGAACACTCCAGCAACTCGATGGACTCACAGTGCGGTAATAGCAACAGCAATACGGCCACCATGCCGGGTAATAATAACATCggcggtaacaacaacaatcccaAAGACTTGCCCAACACAGACAGCTTGGAGCGCCATTCAAGCGCTGGTATGCCGTTGCATTCGCGCAAGCTAGAGAGCAGCGGTAGCAGCCATACACCGGTGCCGCCAACAACTAGTAGCGCGTCTGTTTCAATGCATGGCGTTAGTAACTCTACCGCACCCAGTCCATTGAGCAATTCGATTTTGCCACCCGCGATGACATCCAATGATGATTTCTCCGCCACCGCGAGTCCATTGCAGCGCATGGCATCTATCACGAACTCGTTGATCACACAGCCTCCCGTCCCACCACACCACACACCACCGCAGCGTCCCACCAAAGCCGTTTTGCCACCaatcacacaacaacaattcgatATGTTCAATAATCTCAACACCGAGGACATAGTGCGACGCGTTAAAGAAGCACTTTCGCAATACTCCATCTCGCAGCGTCTCTTCGGCGAATCAGTACTTGGTCTTTCGCAAGGCTCTGTCTCCGATTTGTTAGCACGCCCCAAACCGTGGCATATGTTAACACAGAAGGGACGTGAACCCTTCATACGCATGAAGATGTTCCTTGAAGACGAGAACGCTGTACATAAGTTAGTAGCTAGCCAATACAAGATTGCGCCTGAAAAGCTAATGCGTACCGGCAGTTACAGCGGTACACCACAGATACCACAAGGCCTGGCCAGTAAAATTGGCGCTTCACTACCAATGCAAAAAATGATGAACGAATTGAAACTTCAGGAACCGACACAAGCCCAGCATATCATGCAACAAATGCAAGCTGCCGCCATGTCCGCCGCAATgcagcaacatcaacagcagGCACAAAGTCAGCAACAACATGCTGCAGCCGCTGCCGTACAAGCAGCTCAGGCCGCGGCAGCCGCACAAGCAGCTCACCACCAAAGCATGTTGTTGACTTCACCCGGACTGCCACCACAGCACGCCATCAGTCTGCCACCAACTGGCGCCGCTGGCAGTGTTGCTGGCCCGGGCACACCAGGTAGCGATAAGAAACCAATGATGATGCCAATACATTCGCCGCACCAAGCGAACGCAATGCGTAGCATGCACCAACATATGTCGCCGACCGTTTACGAAATGGCGGCGCTTACTCAGGATCTTGATACACAAGTGATAACAACgaaaatcaaagaagctctacTCGCCAACAATATCGGACAAAAGATCTTTGGCGAAGCTGTGCTTGGTCTATCGCAAGGCTCGGTCTCAGAGTTACTCAGCAAACCAAAACCATGGCACATGCTTTCAATTAAGGGGCGTGAACCATTCATACGCATGCAATTGTGGCTGTCCGATGCAAATAATGTTGAACGCCTACAAGTGATTAAGAACGAAAGACGTGAGGCTAGCAAGCGACGTCGCTCAACCGGCCCTAACCAACAAGATAACAGTTCGGATACATCTAGCAACGACACCAACGACTTTTACACCAGTTCGCCCGGTCCCGGTTCAGTGGGCTCATCTGTTAGTGGCGCACCACCGAATAAGAAGCAACGTGTACTCTTTTCCGAAGAGCAAAAGCAAGCTTTGCGTTTAGCTTTCGAACTCGATCCATATCCAAATGTGGCCACTATCGAATTTCTCGCCAATGAGCTCGGTCTTGCCACGCGCACCATTACGAATTGGTTCCACAATCACCGCATGCGTCTTAAACAACAGGTACCACACAATCAGCCCGGTGCCGATAATCCAATACCCAGTCGCGAGAACACCAATTCAACGCCTTTCGATCCCGTCCAATTCCGCATCTTACTGCAGCAACGTCTACTCGAACTGCACAAAGAACGCATGGGACTGAGTGGCGCACCAACGCTACCATACCCGCCCTACTTCGCTGCCGCTGCGCTACTCGGACGCAGCTTGGCTGGCATGCCAGGCGCCGcagccgctgccgctgctgcagcAGCCAGTGCAGGCGGTGAGCCCGACTTGCATGCGCTCAATCAAGCTTTCCGCGAACAAATGCGCGGACTCGATCTCACGATGAGCTCTTTAAAACGTGAACGCAGTGTCGACTATGACGACGATCTCGACGAGAGTCATCTCAGCGACAATGAGTCACTAGACGGTGGTGATGCCGGTGCCGATGATAAGTCCAACAGCGGCGATTACAGAGATGGCACAAGCACGCCGCGCACAACGCCACTCTCAACCGCCGCCAGCTACTTAATGGGTGGACTAAATGCAAATATGCGTAGTTCACGACGCAAACCAGCTGCACCACAATGGGTCAATCCCGCCGGTCCAGGCGTCAGTACCGACACCAATGGTATCGTTGGCGCGACAATGCCACAAACAAGCGCCGAACAAGAACGCATCATCAATGGTGTTTGCGTTATGCAACCGTCCGATTTTAATCGCAGCGAAGGAGACGAAAGCGCCGACGTAAATGCGGAGGCGCATAAACAAGCTGCTGCTGCCAATGTAGGCGAGAACGACGaagagcagcaacagcagcgctTCTTGGAACCGGAGGTGCGCATCAAACAGGAGAAAGAGGATTGTGACAGCGACAATGAGACAACGTCGCTAAACGCAACGGCGCCAACAAGCGAAGAGAAGCTAAAAGTAATCAGCGAAGACAAGTTGCGCATGGTACGCGTACAACGGCACAGTCACGAGGACGATGTGGCGGCGACAACGAACAGCGCAGTGCCGACAACAGCAGGCGCAACCAGCGTGTGGAATTATTAA
Protein Sequence
MQQSTFMPIIYARMRISRVSHALVKSRRSKPIITHVQQLIKALIEEVQRLRTLEQTQLTQIQRLEDHLEVKRQHIMRLESRLDREQINAAHSEANALVETATVTAAAPAIHNVVHNVDDDDDDEDSAAVVDATADAEAAVDKIDLTTTTATTESNDATDAKADFAADRECEQLNAATAVVEDENATTNTTTATHDENNGSTTTATTLETTQVDELQIKKENHSSPLDLDVISQQSAIAAAAAAAAAACANDPNKFQELLLEGTKALAAAANAAEGAAVPASQEMNNADADADADGDEIAHSGNNSIVNDDDDEASPATQIAELSDMPKIPKIEIVDDDDDAEALSVNMPAHADAESLERESHTAYDNATAEVNADMQPPTIDVDALEPAGSNETLQKSELQALQQHVADSTAAAAAAAAAAAAVACFDDNVDAFGTLLGEELVSSYWRGFKMPTPTTNNSGSNSNSSGASAITNKMPNANNMFANQLSHRLPPPPLPPHQHHLAMHQHQHSTFMPHHMQQHHLHQQQQQQQQHQQQQQQNAAATQQHGPSSTALLSQLVNSTFSSTPTTSCSSSSSSLRTDGLLPPPHHLHHSHHAQQGATIGATAPPPPPMPPHHHLHQPHLSAAEVHHKSNMDALHSGNNSNHELSANTSASHAQDARDEQHAALNGSAKSLMEDNNNTLCGTPNANANSAAAMAAAAMAAQQHPHLPPGYLHALPFQFQERGHFRFADDLQLPPGASMAGRLGESLIPKSDPMEAKLQEMLRYNMDKYANQPLDTLHISRRIRELLSVHNIGQRLFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWGCDDNAVMLLKSLIPKKDSGLPPYGGREDSMSDDRIAHILNEASSMIKNSTPGSLQQQLKEAEQRQLQQEHHRRSAHDESQHSNEDSKSPHPLCTSPFYKSNSQLKQEQEAAAAAAAQQQQHRLRQEQELTPDKMARIYQEFLMRTPREAAFPSLLLSPFFSAAGGMPSGCGLPNMMAADENLRLTYEREMAKLQQQQQQQTAAAAAAASSLPNFPNFSNLMALQQQVLNGAQDLTLTKDPKDAIKVNGQRAIEHSSNSMDSQCGNSNSNTATMPGNNNIGGNNNNPKDLPNTDSLERHSSAGMPLHSRKLESSGSSHTPVPPTTSSASVSMHGVSNSTAPSPLSNSILPPAMTSNDDFSATASPLQRMASITNSLITQPPVPPHHTPPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGSYSGTPQIPQGLASKIGASLPMQKMMNELKLQEPTQAQHIMQQMQAAAMSAAMQQHQQQAQSQQQHAAAAAVQAAQAAAAAQAAHHQSMLLTSPGLPPQHAISLPPTGAAGSVAGPGTPGSDKKPMMMPIHSPHQANAMRSMHQHMSPTVYEMAALTQDLDTQVITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQVIKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSSVSGAPPNKKQRVLFSEEQKQALRLAFELDPYPNVATIEFLANELGLATRTITNWFHNHRMRLKQQVPHNQPGADNPIPSRENTNSTPFDPVQFRILLQQRLLELHKERMGLSGAPTLPYPPYFAAAALLGRSLAGMPGAAAAAAAAAASAGGEPDLHALNQAFREQMRGLDLTMSSLKRERSVDYDDDLDESHLSDNESLDGGDAGADDKSNSGDYRDGTSTPRTTPLSTAASYLMGGLNANMRSSRRKPAAPQWVNPAGPGVSTDTNGIVGATMPQTSAEQERIINGVCVMQPSDFNRSEGDESADVNAEAHKQAAAANVGENDEEQQQQRFLEPEVRIKQEKEDCDSDNETTSLNATAPTSEEKLKVISEDKLRMVRVQRHSHEDDVAATTNSAVPTTAGATSVWNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00080983;
90% Identity
iTF_00190473;
80% Identity
iTF_01563644;