Basic Information

Gene Symbol
ct
Assembly
GCA_001188975.4
Location
LGAM02028583.1:236579-276014[-]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 1.2e-26 1.3e-22 79.8 0.0 3 71 784 853 782 859 0.94
2 3 5.6e-32 5.8e-28 96.9 0.0 3 77 1249 1324 1247 1326 0.96
3 3 7.9e-31 8.1e-27 93.2 0.0 3 76 1497 1571 1495 1574 0.96

Sequence Information

Coding Sequence
ATGCAACAGTCAACAGTAGCAACAGTCATGCATTTAATATATGCGCGTATGCGAATTTCGCGTGTCAGCAAAACATTAGTTAAAAGTCGCCGCAGAAAACCAATAATCACGCATGTGCAACAACTAATTAAAGCACTTATCGAAGAGGTACAACGCCTGCGCACACTCGAACAAACACAACTCACACAAATACAACGACTTGAGGATCACTTAGAAGTGAAGCGTCAGCATATTATGCGCCTAGAAGCGCGTCTCGATAGCCAACAAATCAATGATGCGCACAACGAAGCGTTCGCATCTACCGCTAACaacacaacagcagcagcagcaacaacagttaGCGCAGCTGCGCCCGCGACATGCGATGTTGTGCACGATGTTGACGATGATGATGAGGATAATGAAGAAGTTGTTGACACCACTGCTGACGCTGATGCGGCGGttgataaaattgatttaacaacaacaacaaccacagcaacaaCTGAGTCGAATGACGCCACAGACGCTAAAGCTGATTTCGCCGCTGATCGCGAATGTGCGCAGTTCGGTGCGGCGACGGAGGaagcaaatgcaacaacaagcacaacaacaacaacaacggcaacagcGACAAATAACAATggcagcacaacaacagcaacagcactTGAAACAACACAGCATACGTCTCAACAAGCTAGCGAGCttcaaatcaaaaaggaaaatcaCAGCCCACTCGATTTGGACGTGATTAGTCAGCAATCGGCCATAGCTGCTGCagccgccgccgccgctgccgCTTGCGCTAATGATCCGAACAAATTCCAGGAATTGCTGCTCGAGGGCACCAAAGCGTTGGCGGCCGCCGCTAGTGCTGCCGAGGGAGCAGCCGTTCCAGTCAGCCAACCAATGAACAACGCAGACGCCGACGTTGACGCTGACGCTGATGCCGACGTCGACGATGTCGCGGCCAGTGGCAACAACAGCATAGCaaacgacgacgacgacgagaAGTCGTCTGCAACGAAACTTGCCGAATTgccaaaaataccaaaaattgaaATAGTCGATGATGACGATGATGCAGAAGCGCTTGGAGTTGACATGCCAGCGCAGGTCGACAATGAGTTGCTTGAGCGCGATAACCTAAAAACGGCATACGACAATGTAACTGCCGAAGCGCATGAAAGCTTGCAACTGCCCACAATCGACGTGGACGCTTTGGAGACTGCAGGCAGCAATGATGTCAGCGCTGCCGTGCAGAAATCTGAGTTGCAAGCACTGCAACAACATGTTGCCGACTCCACTGCagctgctgccgccgccgctgctgcgGCTGTCGCTTGTTTCGACGATAATGTTGATGCTTTCGGCACATTGCTCGGCGAAGAGCTGGTGAGCTCTTATTGGCGCGGCTTCAAAATGCCCACGTCTACGCCTAACAGTAGCAccggcagcagcaacagcggcGTTGCCGTTGCCAATAAAATGCCAAACGCTAATAACATGTTTGCCAATCAGTTGTCGCATCGTTTGCCGCCGCCGTTGCCACCACATCAGCACCACCTTGCCATGCACCATCACCAGCACGCAACACTTATGCCACATCACATGCAACAGCACCACCTacaccaacagcagcagcaacagcaacaacagcagcagcaacaaaatgcCGCCGCTACGCAACAGCATGGACCTTCGTCCACCGCGCTGCTCAGCCAATTAGTTAATTCCACATTCTCATCAACACCACCCActtcttgttcttcttcttcctcttctcTACGTACAGATAGCCTGCTACCACCACATCATCTACATCATGGCCACCATGCGCAGCAGGGCGACACGCGCGGCGCGTCAGCACCGCCGCCACCACCCATACCGACACATCATCACCTGCATCAGCCACACCTCAGCGCTGAGGCGCATCACAAGTCCGGCATGGAAGCACTACACAGCGGTAACAATAGCAATCACGAGTTATCAGCCAATACAAGCGCGTCACACGCGCAGGATGCGCGCGATGAACAACACGCCGCGCTTAATGGCAGCGGTAAGTCGTTATTAGAGGACAACAACAATACACTGTGCGTCACACCCAATGCGAATGCGTCTAGCGCCGCAGCCATGGCGGCCGCCGCAATGGCCGCACAACAACATCCACACCTGCCGCCCGGTTACTTGCATGCGTTACCATTCCAGTTTCAGGATCGCGGACATTTCCGCTTCGCCGACGACTTACAGTTGCCGCCGGGCGCTTCGATGGCTGGCCGCCTCGGTGAATCGCTTATACCCAAAAGCGATCCAATGGAGGCTAAGTTACAGGAAATGCTACGCTACAATATGGATAAGTATGCCAATCAGCCGCTGGACACATTGCATATCTCGCGACGCATACGCGAGCTGTTGTCAGTGCACAATATCGGACAGCGGCTGTTCGCCAAGTACATACTTGGCCTGTCGCAGGGCACCGTATCGGAGTTGTTGTCCAAGCCGAAGCCGTGGGATAAGCTGACCGAGAAGGGACGTGACAGCTATCGCAAAATGCACGCCTGGGGATGTGATGATAACGCTGTGATGCTGCTCAAATCGCTCATACCGAAAAAAGATTCTGGTTTGCCGCCATATGGTGGACGTGAAGACTCCATATCGGATGATCGCATCGCACACATTCTCAACGAAGCATCGAGCATGATCAAAAATTCCACACCGGGCTCACTACAGCAGCAACTAAAAGAGGCCGAACAGCGACAGCTGCAACAAGAGCAACATCGACGCTCGGCGCATGACGAGTCGCAACACAGCAATGAGGATTCCAAGTCGCCACATCCATTATGCACCTCGCCATTCTATAAGAGCAACAGCCAATTGAAGCAGGAGCAGGAGGCGGCCGCAGCAGCTGCtgcgcaacagcaacagcatcgTTTGCGTCAGGAACAGGAGTTGACGCCCGACAAAATGGCGCGCATCTATCAGGAGTTTCTTATGCGTACGCCACGCGAAGCCGCCTTCCCCAGCGCTGCCGGTGGCATGCCCAGCGGTTGTGGGCTACCCAACATGATGGCTGCCGATGAGAATTTACGCCTCACTTATGAGCGTGAAATGGCTaaattgcaacagcaacaacaacagcaaactgcTGCAGCCGCAGCCGCCGCTAGCAGCTTGCCAAACTTCCCCAATTTCTCCAATTTGATGGCATTGCAGCAGCAAGTATTGAATGGCGCACAGGACCTTACGCTGACAAAGGATCCCAAAGACGCTATAAAAGTCAATGGACAGCGTGCCATCGAGCACTCCAGCAACTCTATGGATTCACACTGCGGTAATAGCAACAGCAATACGGCCACCATGCCGGGTAGTAATAACATCggcagtggcaacaacaatgccaaAGATTTGCTGAACACCGACAGCTTGGATCGCCATTCTAGCGCCAGTATGCCGTTGCATACGCGCAAGCTGGAGAGCAGTGGCAGTAGCCATACACCAGTGCCGCCAACAACTAGTAGCGCGGCTGTTTCCATGCATGGCGTTAGCAACTCCACCGCACCCAGTCCATTGAGCAATTCGATTTTGCCCCCCGCGATGACATCTAATGATGATTTCTCCGCCACCGCAAGCCCTTTGCAGCGCATGGCATCTATCACGAACTCGTTGATCACACAGCCACCCGTCCCACCACACCACACACCACCGCAGCGTCCCACCAAAGCCGTCTTGCCAccaatcacacaacaacaattcgaTATGTTCAATAATCTTAACACGGAGGACATAGTGCGACGCGTTAAGGAGGCACTTTCGCAGTACTCCATCTCGCAGCGTCTCTTTGGCGAATCAGTACTCGGTCTCTCACAAGGCTCTGTTTCTGATTTGTTGGCACGCCCCAAACCTTGGCATATGTTGACACAAAAGGGACGTGAACCCTTCATACGCATGAAGATGTTCCTTGAAGACGAGAATGCTGTACATAAATTAGTCGCCAGCCAATACAAGATTGCGCCCGAAAAGCTGATGCGTACCGGCAGTTATAGCGGTACACCACAGATACCGCAAGGATTGGCCAGTAAAATTGGCGCTTCGCTACCAATGCAAAAAATGATGAACGAATTGAAGCTTCAGGAACCAACACAAGCCCAGCATATCATGCAACAAATGCAAGCTGCTGCCATGTCCGCCGCAATgcaacaacaccagcagcaGGCACAAAGTCAACAACAGCACGCTGCAGCTGCTGCAGTACAAGCTGCACAGGCCGCTGCCGCAGCACAAGCGGCACACCACCAAAGCATGTTGTTGACTTCACCCGGACTGCCACCACAGCACGCCATCAGCCTGCCACCAACTGGCGCCGCTGGCAGTGCTGTTGGCCCGGGCACACCAGGTAGCGATAAGAAACCAATGATGATGCCAATACATTCGCCGCATCAAGCAAACGCAATGCGCAGCATGCACCAACATATGTCGCCGACCGTTTACGAAATGGCGGCGCTTACTCAGGATCTTGATACACAAGTGATAACTACGAAAATTAAAGAAGCTCTACTCGCCAACAATATCGGCCAAAAGATCTTTGGCGAAGCTGTGCTCGGCCTATCGCAAGGCTCGGTCTCAGAGTTACTCAGCAAACCAAAGCCATGGCATATGCTCTCCATTAAGGGTCGTGAACCGTTCATACGTATGCAATTGTGGCTATCCGATGCTAATAACGTTGAACGCCTACAGGTGATTAAGAACGAAAGACGTGAAGCTAGCAAGCGACGTCGTTCAACCGGGCCCAACCAACAGGATAACAGTTCGGATACATCTAGCAATGACACCAACGACTTTTATACCAGCTCGCCCGGTCCTGGCTCAGTCGGCTCATCCGTTAGTGGCGCACCCCCGAATAAGAAGCAACGTGTACTCTTTTCCGAAGAGCAAAAGCAAGCTTTGCGTTTAGCTTTCGAACTCGATCCATATCCAAATGTGGCCACAATCGAATTTCTTGCCAATGAGCTCGGTCTCGCCACGCGCACCATCACGAATTGGTTCCATAATCACCGCATGCGTCTTAAACAGCAGGTGCCACACAATCAGCCCGGTGCCGACAATCCAATACCCAGTCGCGAGAACACCAATTCAACGCCTTTCGATCCCGTCCAATTCCGCATTCTACTACAGCAGCGTCTACTTGAACTGCACAAAGAACGCATGGGACTGAGTGGGGCACCAACGCTACCATACCCGCCCTATTTCGCTGCCGCAGCGCTACTTGGACGCAGCTTAGCTGGCATGCCAGCCGCCGCTGCCGCCGCAGCCGCTGCAGCAGCCAGTGCTGGCGGCGAGCCTGACCTACACGCGCTCAATCAGGCTTTCAAAGAACAAATGCGCGGACTTGATCTCTCAATGAGTTCTATGAAACGTGAACGCAGCGTCGACTATGACGACGAACTCGACGAGAGTCATCTTAGCGACAATGAGTCGCTAGACGGTGTTGATGGCACTGGCGATGACAAGTCCCTCAGCGGCGATTACAAAGATGGCGGCTCAAGCACGCCCCGCACTACGCCACTATCTAACGCAGCCAGCTATTTACTGGGTGGACTGAATGCAAATATGCGTAGTTCACGACGCAAACCAGCCGCACCACAATGGGTCAACCCCGCCGGTCCAAGTCTAAGCACAGATACCAATGGTATTGCGTGCGCGACAATGACAACAGCAACTGGCATCCCACAGTCAGCAGCCGAACAAGAACGCATCATCAATGGTGTTTGCGTTATGCAACCGTCCGATTTTAATCGCAGTGAAGCTGACGAAAACGCCGATGCCAATCCGGAGGCGCACAAACACGTCGAAGTAGGCGAGACCGACGTGGAGCAGCAGCGTTTCCTGGAACCGGAAGTTCGCATAAAACAGGAGCAGGAAGATTGTGACAGCGACACTGAAGCAACGCCGCTTTCAACAACGTCGCCAACAAGCGAAGAGAAGCTAAAAGTAATCAGCGAAGACAAGTTGCGCATGGTGCGCCTACAGCGGCACAGTCACGAAGACGAAGTCACGGCGCTCGGCGTGCCAACAACGAACACAACAGCGCCGACAACAACAGGCGCAGCAAACGCTTGgaattattaa
Protein Sequence
MQQSTVATVMHLIYARMRISRVSKTLVKSRRRKPIITHVQQLIKALIEEVQRLRTLEQTQLTQIQRLEDHLEVKRQHIMRLEARLDSQQINDAHNEAFASTANNTTAAAATTVSAAAPATCDVVHDVDDDDEDNEEVVDTTADADAAVDKIDLTTTTTTATTESNDATDAKADFAADRECAQFGAATEEANATTSTTTTTTATATNNNGSTTTATALETTQHTSQQASELQIKKENHSPLDLDVISQQSAIAAAAAAAAAACANDPNKFQELLLEGTKALAAAASAAEGAAVPVSQPMNNADADVDADADADVDDVAASGNNSIANDDDDEKSSATKLAELPKIPKIEIVDDDDDAEALGVDMPAQVDNELLERDNLKTAYDNVTAEAHESLQLPTIDVDALETAGSNDVSAAVQKSELQALQQHVADSTAAAAAAAAAAVACFDDNVDAFGTLLGEELVSSYWRGFKMPTSTPNSSTGSSNSGVAVANKMPNANNMFANQLSHRLPPPLPPHQHHLAMHHHQHATLMPHHMQQHHLHQQQQQQQQQQQQQNAAATQQHGPSSTALLSQLVNSTFSSTPPTSCSSSSSSLRTDSLLPPHHLHHGHHAQQGDTRGASAPPPPPIPTHHHLHQPHLSAEAHHKSGMEALHSGNNSNHELSANTSASHAQDARDEQHAALNGSGKSLLEDNNNTLCVTPNANASSAAAMAAAAMAAQQHPHLPPGYLHALPFQFQDRGHFRFADDLQLPPGASMAGRLGESLIPKSDPMEAKLQEMLRYNMDKYANQPLDTLHISRRIRELLSVHNIGQRLFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWGCDDNAVMLLKSLIPKKDSGLPPYGGREDSISDDRIAHILNEASSMIKNSTPGSLQQQLKEAEQRQLQQEQHRRSAHDESQHSNEDSKSPHPLCTSPFYKSNSQLKQEQEAAAAAAAQQQQHRLRQEQELTPDKMARIYQEFLMRTPREAAFPSAAGGMPSGCGLPNMMAADENLRLTYEREMAKLQQQQQQQTAAAAAAASSLPNFPNFSNLMALQQQVLNGAQDLTLTKDPKDAIKVNGQRAIEHSSNSMDSHCGNSNSNTATMPGSNNIGSGNNNAKDLLNTDSLDRHSSASMPLHTRKLESSGSSHTPVPPTTSSAAVSMHGVSNSTAPSPLSNSILPPAMTSNDDFSATASPLQRMASITNSLITQPPVPPHHTPPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGSYSGTPQIPQGLASKIGASLPMQKMMNELKLQEPTQAQHIMQQMQAAAMSAAMQQHQQQAQSQQQHAAAAAVQAAQAAAAAQAAHHQSMLLTSPGLPPQHAISLPPTGAAGSAVGPGTPGSDKKPMMMPIHSPHQANAMRSMHQHMSPTVYEMAALTQDLDTQVITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQVIKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSSVSGAPPNKKQRVLFSEEQKQALRLAFELDPYPNVATIEFLANELGLATRTITNWFHNHRMRLKQQVPHNQPGADNPIPSRENTNSTPFDPVQFRILLQQRLLELHKERMGLSGAPTLPYPPYFAAAALLGRSLAGMPAAAAAAAAAAASAGGEPDLHALNQAFKEQMRGLDLSMSSMKRERSVDYDDELDESHLSDNESLDGVDGTGDDKSLSGDYKDGGSSTPRTTPLSNAASYLLGGLNANMRSSRRKPAAPQWVNPAGPSLSTDTNGIACATMTTATGIPQSAAEQERIINGVCVMQPSDFNRSEADENADANPEAHKHVEVGETDVEQQRFLEPEVRIKQEQEDCDSDTEATPLSTTSPTSEEKLKVISEDKLRMVRLQRHSHEDEVTALGVPTTNTTAPTTTGAANAWNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00080983;
90% Identity
iTF_00190473;
80% Identity
iTF_00192716;