Atex013133.1
Basic Information
- Insect
- Atta texana
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_004480015.1
- Location
- QEPB01042917.1:11864-19362[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.6e-91 6.6e-87 292.1 26.2 48 300 3 251 1 251 0.95 2 3 0.0043 1.1e+02 2.4 3.8 122 171 251 300 250 304 0.91 3 3 0.048 1.2e+03 -1.0 6.4 195 237 283 324 272 326 0.54
Sequence Information
- Coding Sequence
- ATGAGAGTAACTCCAGATCCAGTACGTACATCGCGACTTCTTACAAATTCCAATAATTTCCAATCGAGTCGTAGATCTTCAGAAGATTCATTGGAAGATGCAGGATTAAGCAGAGATATTAggctggaattaaaagaatttgaagaaaaatttagaaaggCTATGATAGCTAATGCTCAATTAGACAATGAAAAATCATCTTATGCCTACCAAGTTGATttgttaaaagataaattggaAGAATTAGAGGAAACCACTACACAATTACGTAgagaattaagagaaaaaaatcgagatgTTGAACAATTAAAACGGGTCAGTCAGCGATTGAAAGAAGATTTAGATATTTGCAGAGCGCAATTACTAGAAAGAGATACACTTATACAAgaAAACGGTTTAGTTATTGTTGATAATAAGGAAAATGAAGATGAGGATaacgaaaatattgaaaatgaattatgttataaaaagaagatattagtCAGTACAGAAGCTGCAGAATTATTAGAAACAGCTGGTAAAGGTTCACTagaTATTCGACTGAGGAAATTTGCTTctgaaaaaaaggaattgcAAGATGAGATTCGCCATTTAAGATTGGAATTAGAAGAAACTAGAAATCGCATGAGACCCGAAAAATCATCTGGTTCGATATTAgGTTTATCAGATAACGAAGATATTCAACGTgaagcaaataaattattggccgattataaatttaaattacaaaaagcgGAACAAGATATGTCTACACTGCAAGCAACAGTAGCTAGACTAGAAAGTCAAGTAATTCGTTACAAATCAGCTGCAGAAGCATCTGAAAAAGCAGAAGATGAGTTGaaagtagaaaaaagaaagttgcAGAGAGAAgTAAGAGAAACACAAAGTCGTGTAGAGGAATTGGAGACAGCAAATTCTCATCTACAAAGGAGATTGGATAAACTTAAAAATGCTAAATCGGCTCTTTTAAAAGAGCTTTGA
- Protein Sequence
- MRVTPDPVRTSRLLTNSNNFQSSRRSSEDSLEDAGLSRDIRLELKEFEEKFRKAMIANAQLDNEKSSYAYQVDLLKDKLEELEETTTQLRRELREKNRDVEQLKRVSQRLKEDLDICRAQLLERDTLIQENGLVIVDNKENEDEDNENIENELCYKKKILVSTEAAELLETAGKGSLDIRLRKFASEKKELQDEIRHLRLELEETRNRMRPEKSSGSILGLSDNEDIQREANKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRETQSRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_01229017; iTF_01228369;
- 80% Identity
- -