Pcal023481.1
Basic Information
- Insect
- Pogonomyrmex californicus
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_017141365.1
- Location
- JAEVLP010002743.1:3764-5404[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.7e-92 2.3e-87 294.0 24.0 48 300 3 252 1 252 0.96 2 3 0.0031 1.1e+02 2.9 3.8 122 171 252 301 250 305 0.91 3 3 0.056 1.9e+03 -1.2 7.0 194 238 283 326 270 327 0.55
Sequence Information
- Coding Sequence
- ATGAGAGTAACTCCAGATCCAGTGCGTACATCGCGACTTCTTACAAATTCCAATAATTTCCAATCGAGTCGTAGATCCTCAGAAGATTCATTGGAAGATGCAGGATTATGCAGAGACATTAGGTTGGAATTAAAGGAATTTGAAGAAAAATTCAGGAAGGCAATGATAGCTAATGCTCAATTAGATAATGAAAAATCATCTTATACTTACCAAGTTGATTTATTAAAAGATAAATTGGAAGAATTAGAGGAAACGACTATGCAATTACGTAGAGAATTGAGGGAAAAAAATCGAGATGTTGAACAACTGAAACGCCTTAGTCAAAGATTGAAGGAAGATTTAGATATTTGCAGAGCGCAGTTGCTAGAAAGAGATACACTTATACAAGAAAATGGTTTAGTCATTGTTGATAATAAGGAAAGTGAAGATGAGGAGAACGAGAATATGGAAAATGGATTATGTCATAGAAAGAGAGTACTAGTCAGTACAGAAGCTGCAGAATTATTAGAAACAGCTGGTAAAGGTTCATTAGATATTCGACTGAGAAAATTTGCATCTGAGAAAAAGGAATTACAAGATGAAATTCGTCATTTAAGATTGGAATTAGAGGAAACTAGAAATCGCTTGAGACCTGAAAAATCATCTGGCTCAATATTAGGTTGTTTATCTGATAGTGAAGATATTCAACGTGAATCAAATAAATTGTTAGCTGATTATAAATTTAAATTACAAAAAGCGGAACAAGATATGTCTACACTACAAGCGACAGTAGCTAGATTAGAGAGTCAAGTAATTCGTTACAAATCAGCTGCAGAAGCATCGGAAAAAGCAGAAGATGAATTAAAAGTAGAAAAAAGGAAATTGCAAAGAGAAGTAAGAGAAACACAAAGTCGAGTAGAAGAACTGGAGACAGCAAACTCCCATCTACAAAGAAGATTGGATAAACTTAAAAATGCAAAATCGGCTCTTTTGAAAGAGCTTTGA
- Protein Sequence
- MRVTPDPVRTSRLLTNSNNFQSSRRSSEDSLEDAGLCRDIRLELKEFEEKFRKAMIANAQLDNEKSSYTYQVDLLKDKLEELEETTMQLRRELREKNRDVEQLKRLSQRLKEDLDICRAQLLERDTLIQENGLVIVDNKESEDEENENMENGLCHRKRVLVSTEAAELLETAGKGSLDIRLRKFASEKKELQDEIRHLRLELEETRNRLRPEKSSGSILGCLSDSEDIQRESNKLLADYKFKLQKAEQDMSTLQATVARLESQVIRYKSAAEASEKAEDELKVEKRKLQREVRETQSRVEELETANSHLQRRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00305050;
- 90% Identity
- iTF_00182618;
- 80% Identity
- -