Alep007195.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Athetis lepigone
Gene Symbol
-
Assembly
GCA_033675125.1
Location
CM066219.1:26216850-26229526[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.0056 0.59 11.8 5.9 1 23 176 198 176 198 0.98
2 11 7.8e-05 0.0081 17.7 1.0 1 23 204 226 204 226 0.98
3 11 8.2e-05 0.0085 17.6 1.7 1 23 232 255 232 255 0.96
4 11 0.039 4 9.2 3.2 1 21 261 281 261 283 0.95
5 11 0.00012 0.013 17.1 2.7 1 23 289 311 289 311 0.99
6 11 1.7e-05 0.0017 19.8 5.3 1 23 317 339 317 339 0.98
7 11 0.0038 0.39 12.4 0.9 1 23 347 370 347 370 0.97
8 11 0.02 2.1 10.1 4.3 2 23 377 398 376 398 0.96
9 11 5.4e-05 0.0056 18.2 2.9 1 23 404 426 404 426 0.98
10 11 5e-06 0.00052 21.4 1.7 1 23 432 455 432 455 0.95
11 11 2.5e-05 0.0026 19.2 6.2 1 23 469 491 469 491 0.97

Sequence Information

Coding Sequence
ATGCCGCCCccagataaaaaagaaaagagcAAGCAGGCTCTCCTTCAAACGTATCTGAACCAAGGAGCAGTCATTGCAGTCAAAGCTGCAACGGATGACAAAGGATTGCCTACGGGAATGGTTGAATATTTTGTAGATGAGGATGGCAAGTACTATTACCAGTCGTCCGTTGAAGGGCAGGCCCTGGTCATGAATGAGGGTGAACCCTCTCAGGAAAATGAAGAGGAGACAGCCGAAACATCCGATGCGATGAATGACCAAGAGGAGACTTATCAGACGGTCACGTTCGTGCCGTCCGAGACCAACGGCGAAGTGAGCTATGTGCTGGTGGTGCAGGACGAGACCAAGGCCGTCGTCAACATCGACCTTAAGGTAGACCAGACGGAATCCGAGGAGAAAGGCAACGACGACGTGTACAACTTCGACGACGAGGAGGGCGgcgaggaggaggaggaggacgAGGACGACGCGCCCGACGGCCGGCCCAAGACCGCGCAGAAGCGCACCAAACACGTGCGCCCGCAGTTCACCTGCAACTTCTGCTCTTACACCAGCCACCGACGGTACCTCCTCCTGCGCCACATGAAATCGCACTCCGAAGACCGGCCGCACAAGTGCAGCGTGTGTGAGCGCGGATTCAAGACCGTGGCATCTCTGCAGAACCACGTCAACATGCACAACGGCATCAAGCCGCACGTCTGCAAGTACTGCAACAGCCCCTTCACCACCTCGGGCGAGCTGGTCCGCCACGTCCGCTACAAGCACACGCACGAGAAGCCGCACAAGTGCTCGGAGTGCGACTACGCGTCCGTGGAGCTGTCCAAGCTGCGTCGACATGTTCGCTGCCACACCGGCGAGAGGCCCTACCAGTGCCCGCACTGCACGTACGCGTCGCCGGACACGTTCAAGCTGAAGCGCCATCTGCGCACGCACACGGGCGAGAAGCCCTACAAGTGTGAGCACTGCAACATGTGCTTTACGCAGTCCAACTCGCTCAAGGCGCACCGGCTTATACACAACGTGGCGGAGAAACCAGTGTATTCGTGCGAGCTATGCCCGGCCAAGTGCGGGCGCAAGACAGACCTACGCATCCACGTGCAGAAGCTTCACACGTCCGACAAGCCGCTCAAGTGTCGCCGCTGCGGCAAGTCCTTCCCCGACCGCTACTCCTGCAAGGTGCACAATAAGACGCACGAAGGCGAGAAGTGCTTCAAGTGCGATCTGTGCCCGTACGCGTCCACCACGCAGCGCCACCTCAAGACGCACATGCTCAAGCACACCGACGAGAAGCCCTTCATCTGCGATATGTGCGACCAGTCCTTCAGGCAAAAGCAGCTGCTCCGTCGTCACCAGAACCTGTACCACAATCCTAACTACGTGCCGAAGCCGCCGAAAGAGAAGACGCACACTTGTCACGAGTGCCACCGTATGTTCGCGCACAAGGGTAACCTCATCCGTCACTTGGCGGTCCATGACCCAGAGTCAGGGCATCATGAGCGCGCCCTCGCCCTCAAGATCGGAAGGCAGAGGAAGGTGAAGTTCATTGATGGAGAACCGATGAGGGATATCCGCGTGCTGGACTCTACTGAAGCAGAGAACATGATGAAGCTGGGTCTCGCCAACAACGAACTGAAGCGCGGTGAAGTGGTGACGGTGGCTGATGGAGACGGCCAGCAGTATGTGGTGCTGGAGGTGATCCAGCTGGAGGACGGCACCGAGCAGCAGGTCGCCGTGGTCGCACCTGACTATATGGATGAAGATGAGCCTGAAggcgaagaagaagaagaagaggaagaagaggaggaggaggaagaagaagaaggcgaGGACAGGAGTTACGTAGTGAAGGAGAACAATGTCACACAGAGCATCAAGCTCGAGAAGGAAGTCGACACGTGCTTTGGATTCGATGAGGAGGACGAGGATCCTGACGATGTTAATTATACTGATAAAGTAGTGTTGCGCTTAGTTTAG
Protein Sequence
MPPPDKKEKSKQALLQTYLNQGAVIAVKAATDDKGLPTGMVEYFVDEDGKYYYQSSVEGQALVMNEGEPSQENEEETAETSDAMNDQEETYQTVTFVPSETNGEVSYVLVVQDETKAVVNIDLKVDQTESEEKGNDDVYNFDDEEGGEEEEEDEDDAPDGRPKTAQKRTKHVRPQFTCNFCSYTSHRRYLLLRHMKSHSEDRPHKCSVCERGFKTVASLQNHVNMHNGIKPHVCKYCNSPFTTSGELVRHVRYKHTHEKPHKCSECDYASVELSKLRRHVRCHTGERPYQCPHCTYASPDTFKLKRHLRTHTGEKPYKCEHCNMCFTQSNSLKAHRLIHNVAEKPVYSCELCPAKCGRKTDLRIHVQKLHTSDKPLKCRRCGKSFPDRYSCKVHNKTHEGEKCFKCDLCPYASTTQRHLKTHMLKHTDEKPFICDMCDQSFRQKQLLRRHQNLYHNPNYVPKPPKEKTHTCHECHRMFAHKGNLIRHLAVHDPESGHHERALALKIGRQRKVKFIDGEPMRDIRVLDSTEAENMMKLGLANNELKRGEVVTVADGDGQQYVVLEVIQLEDGTEQQVAVVAPDYMDEDEPEGEEEEEEEEEEEEEEEEGEDRSYVVKENNVTQSIKLEKEVDTCFGFDEEDEDPDDVNYTDKVVLRLV