Basic Information

Insect: Lacanobia oleracea
Gene Symbol: Ctcfl
Assembly: GCA_950371165.1
Location: OX493385.1:34555312-34573463[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0024 0.33 12.9 5.2 1 23 268 290 268 290 0.98

2 11 8.8e-05 0.012 17.5 1.4 1 23 296 318 296 318 0.98

3 11 0.0003 0.04 15.8 3.9 1 23 324 347 324 347 0.96

4 11 0.044 5.9 9.0 3.2 1 21 353 373 353 375 0.95

5 11 0.00014 0.019 16.9 2.7 1 23 381 403 381 403 0.99

6 11 4.9e-05 0.0065 18.3 3.2 1 23 409 431 409 431 0.98

7 11 0.0069 0.92 11.5 0.5 1 23 439 462 439 462 0.96

8 11 0.023 3.1 9.9 4.3 2 23 469 490 468 490 0.96

9 11 6.1e-05 0.0082 18.0 2.9 1 23 496 518 496 518 0.98

10 11 2.5e-05 0.0034 19.2 1.7 1 23 524 547 524 547 0.93

11 11 1.8e-05 0.0023 19.7 3.9 1 23 561 583 561 583 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0024	0.33	12.9	5.2	1	23	268	290	268	290	0.98
2	11	8.8e-05	0.012	17.5	1.4	1	23	296	318	296	318	0.98
3	11	0.0003	0.04	15.8	3.9	1	23	324	347	324	347	0.96
4	11	0.044	5.9	9.0	3.2	1	21	353	373	353	375	0.95
5	11	0.00014	0.019	16.9	2.7	1	23	381	403	381	403	0.99
6	11	4.9e-05	0.0065	18.3	3.2	1	23	409	431	409	431	0.98
7	11	0.0069	0.92	11.5	0.5	1	23	439	462	439	462	0.96
8	11	0.023	3.1	9.9	4.3	2	23	469	490	468	490	0.96
9	11	6.1e-05	0.0082	18.0	2.9	1	23	496	518	496	518	0.98
10	11	2.5e-05	0.0034	19.2	1.7	1	23	524	547	524	547	0.93
11	11	1.8e-05	0.0023	19.7	3.9	1	23	561	583	561	583	0.97

Sequence Information

Coding Sequence: ATGATAATAAGTACTCCAGtTGGGCCGACAGGCCGAAGTGTTCGGGTTAAGTTAGAATCTCCAGCACAGCGGGAAGACCCGGAAAGCTCAGACAGTGAGGAGGTGTTTCCCCCAGCACCCAGTGTACAGGGGGAAGTAGTCTCGTACAGGCAAGAGAGCCAGGCAAGCCTGGGGGAGAATATCGTGATTCCTCCCAAAAAGAAGTCTTCAAGGCAAGGTCGCCCTGGACAAGGCAATCGAAAAGGTTTGACAAAAAAAGCCATCATGCCGCCTCCTCAGAAAAAGGAGAAAAATAAGCAAGCCCTCATCCAATCATACTTGAACCAAGGAACAGTCATTGCAGTCAATGCTGCAACGGATGAAAAAGGCTTGCCCACGGGCATGGTAGAATATTTTGTGGATGAAGATGGCAAGTACTACTACCAGTCAGCCATCGAAGGACCGGCCTTGGTCATGGACGAGGATGACAATGAAGAAGCTGAGGAGGCCGCTGAATCATCGGATGCTATAATGAATGATCAAGACGGTCAGTACCAGACGGTCACCTTTGTCCCTTCTGAGAATAATGGCGAAGTCAGCTACGTACTTGTGGTCCAAGATGAGTCCAAGGGAGTGGTCAATATTGACCTGAACATGGACCAGTCGGAGGCTGAGGAGAAAGGCAACGATGACGTGTACAACTTTGAAGATGAGGAAGGTGGGGAAGaggaggaagaagaagaagaggaggCGCCTGCCGCCGACGGCGTCAAGGCCAGCAAGACGCCGCAGAAGCCGCGCAGCAAGCACGTGCGACCGCACTTCAACTGCAACTTCTGCGACTACACTAGTCATCGCAGATACCTTCTCCTGCGTCATATGAAGTCTCATTCGGAGGACAGGCCGCACAAATGCAGCGTTTGCGAGCGCGGCTTCAAGACCATGGCGTCGCTTCAGAACCACGTCAACATGCACAACGGCATCAAGCCGCACGTCTGCAAGTATTGCAGCTGCCCCTTCACCACCTCGGGCGAGCTGGTGCGTCACGTCCGCTACAAGCATACGCATGAGAAGCCACACAAGTGCTCCGAGTGCGACTACGCTTCTGTTGAGCTGTCCAAGCTCCGCCGCCACGTCCGCTGCCACACCGGCGAGAGGCCCTACCAGTGCCCGCACTGTACGTACGCGTCTCCGGACACGTTCAAGCTGAAGCGCCACCTGCGCACGCACACGGGCGAGAAGCCCTACAAGTGCGACAGCTGCAACATGTGCTTCACGCAGTCCAACTCGCTGAAAGCTCACCGCCTCATCCACAATGTTGCTGAGAAACCGGTATACGCGTGCGAGCTGTGCCCGGCCAAGTGCGGCCGCAAGACGGATCTGCGCATCCACGTGCAGAAACTGCACACCTCCGACAAGCCGCTGAAGTGCCGCCGCTGTGGCAAGTCCTTCCCCGACCGCTACTCCTGCAAGGTCCACAATAAGACCCACGAGGGCGAGAAGTGCTTCAAGTGCGACCTGTGCCCGTACGCGTCTACCACTCAGCGTCATCTCAAGACGCACATGCTCAAACATACTGATGAGAAGCCATTCCTCTGCGACTTGTGCGACCAGTCATTCAGGCAAAAGCAGTTGCTCCGTCGCCACCAGAACTTGTACCACAACCCCAACTACGTACCAAAGCCGCCGAAGGAGAAGACCCACTCGTGCCACGAATGCCAGCGCATGTTCGCGCACAAGGGCAATCTGATCCGCCACTTGGCTGTGCACGACCCCGAGTCCGGCCATCAGGAGCGTGCGCTGGCCCTCAAGATCGGACGACAGAGGAAGGTGCAGTTTATCGATGGAAAGCCGATGAGGGATCTCCGTGTGGTGGATTCAGCGGACGCCGAGAGCATGATGAAGCTGGGTCTGACTAACAATGAGCTGAAACGCGGCGAGCTGGTGACCGTGGCTGATGGAGACGGTCAGCAGTATGTGGTGCTGGAGGTGATCCAACTCGAGGACGGCACCGAGCAGCAGGTGGCGGTCGTGGCTCCTGACTTTATGGATGAGGATGagcctgAagatgaagaagatgaagaggaagaagaagaggaagaggAAGATGAGGAAGAGGGCGAGGACAGAAGTTTCGTAGTAAAGGAGACGCCCGTAGCTTCTCAGAGCATCAAGCTCGAGAGGGAGGTAGACACGTGCTTCGGATTCGACGAGGAGGATGAAGAGGAAGAGGAACCCCACGACGTTAATATAACTGACTCTTGCGTTTTAcgtttaatttaa
Protein Sequence: MIISTPVGPTGRSVRVKLESPAQREDPESSDSEEVFPPAPSVQGEVVSYRQESQASLGENIVIPPKKKSSRQGRPGQGNRKGLTKKAIMPPPQKKEKNKQALIQSYLNQGTVIAVNAATDEKGLPTGMVEYFVDEDGKYYYQSAIEGPALVMDEDDNEEAEEAAESSDAIMNDQDGQYQTVTFVPSENNGEVSYVLVVQDESKGVVNIDLNMDQSEAEEKGNDDVYNFEDEEGGEEEEEEEEEAPAADGVKASKTPQKPRSKHVRPHFNCNFCDYTSHRRYLLLRHMKSHSEDRPHKCSVCERGFKTMASLQNHVNMHNGIKPHVCKYCSCPFTTSGELVRHVRYKHTHEKPHKCSECDYASVELSKLRRHVRCHTGERPYQCPHCTYASPDTFKLKRHLRTHTGEKPYKCDSCNMCFTQSNSLKAHRLIHNVAEKPVYACELCPAKCGRKTDLRIHVQKLHTSDKPLKCRRCGKSFPDRYSCKVHNKTHEGEKCFKCDLCPYASTTQRHLKTHMLKHTDEKPFLCDLCDQSFRQKQLLRRHQNLYHNPNYVPKPPKEKTHSCHECQRMFAHKGNLIRHLAVHDPESGHQERALALKIGRQRKVQFIDGKPMRDLRVVDSADAESMMKLGLTNNELKRGELVTVADGDGQQYVVLEVIQLEDGTEQQVAVVAPDFMDEDEPEDEEDEEEEEEEEEDEEEGEDRSFVVKETPVASQSIKLEREVDTCFGFDEEDEEEEEPHDVNITDSCVLRLI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00177438;
90% Identity: iTF_01026640;
80% Identity: -