Acen058093.1
Basic Information
- Insect
- Atethmia centrago
- Gene Symbol
- -
- Assembly
- GCA_905333075.2
- Location
- HG995396.1:8540039-8543340[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.002 0.31 13.4 0.4 3 23 2 23 1 23 0.96 2 20 0.04 6.2 9.3 0.1 3 23 50 71 48 71 0.94 3 20 0.094 14 8.1 1.2 2 23 94 115 93 115 0.96 4 20 7.8e-07 0.00012 24.1 3.7 1 23 119 142 119 142 0.96 5 20 0.4 62 6.1 0.4 3 20 149 166 148 168 0.89 6 20 0.15 23 7.5 0.1 1 23 175 198 175 198 0.95 7 20 0.002 0.31 13.4 1.7 1 23 205 228 205 228 0.97 8 20 2.5e-06 0.00039 22.5 1.1 1 23 233 255 233 255 0.98 9 20 3.4e-05 0.0053 18.9 2.6 1 23 261 283 261 283 0.92 10 20 0.0012 0.18 14.1 6.7 1 23 289 311 289 312 0.95 11 20 4.9 7.5e+02 2.7 4.0 2 23 329 350 328 351 0.92 12 20 9.4 1.5e+03 1.8 0.5 2 23 378 400 377 400 0.92 13 20 1.3 2e+02 4.5 6.7 1 23 425 447 425 447 0.95 14 20 0.46 72 5.9 3.2 1 21 451 471 451 474 0.94 15 20 0.11 17 7.8 0.2 1 21 479 499 479 500 0.94 16 20 0.07 11 8.5 2.5 3 23 508 530 506 530 0.87 17 20 0.00041 0.064 15.5 2.0 1 23 537 560 537 560 0.96 18 20 0.12 19 7.8 2.5 1 23 565 587 565 587 0.95 19 20 3.2e-05 0.005 19.0 0.8 1 20 593 612 593 615 0.94 20 20 1.3e-05 0.0021 20.2 1.2 1 23 621 644 621 644 0.98
Sequence Information
- Coding Sequence
- ATGTGCGTATATTGCGGGGACAGTTACACCGACGCCACGCTGTTTCGACAGCACATGAAGAAAGAACATTTCTCCTTCAAAGTCCGAACCGCTTTCGCTCATATTGCTTACGAGTGCTACCTTAAAATCGACTGCACAGAAATGGCCTGCAGAATCTGCTTTGAATCCTTTGCAAGAATTGACGATATTGCAAGACATTTAAACGAGAGACATGACGCCAAAATCAACTTTGACTTCCAATTAGGACTACATCCCTACAGATTCCTACAAGACAGACTCATGTGCGGGATATGTGATCTAAACTTCCCCTGTATGCGGCAGCTCAGTCGTCACATGTCTTCTCACTTCCAGAACTTCACGTGCGACACATGCGGCAAGTCTTATACGACGAACAGCTCATTGCAGCACCATATTCGATTCACGCACATAGCAGCCGCGAGAATATGCAGGAAATGCAAACAGACGTTCAGTTCTTTAGAAGCTAAGAGGGAGCATACGATTAATTCTCCCAACTGTTGGATGTATCAATGTCTTGTGTGTCTAGAGCGATTCATGACATGGCCCGCTAAAGAACGACATTTAGTAATGGCTCATGGGCAATCCAGAAAGTCCTATTCTTGTTCCGAATGCAGTCTAAGCTTTACGACTAGAAATGCGTACAGAGGGCACTTTAATACGACCCACGCTGAAGTGAACTTCCCTTGCGCGCACTGCGGACGGAAATTCGCCTCCAAAAGATACTTGGAACAGCACATGTTAGTCCACACAGGCATAAAAACGTTTCATTGTAATGTGTGCTCTAAATCTTTTCCGAGAAAGAAGAATCTTGTTCAGCATATGTGGACCCATAGTGACTGTAAGAGGTTTGAGTGCAGTTCTTGTAAAAAGCAGTTCAATCAAAGACATAGTTATAAGGCGCATATGAAAGGACATCATCCTGAGATATCTGAAGATAAATGGGTGGTATTGCGAGGGAAAGCTATAACTTGCGTCTACTGCTGCGAAGGCTATGAGGACCCGACGCATTTCAGACGACACTTCGACGTCCATCACCAAGAATTCACCATCGGCACGGCGTTCCACCACATGAGTAGCTTAAAAGAATACCTCAAAGTTGACATCTGTAATCTAAAGTGCAGACTGTGTTTTCAACCTTGTGAGAAAATCGATGATGTCGCTCAGCACCTGAAGGAGGCACATTCAGATGTTGCAAAGAAATTAAACCTCGAATTCGATGTGGGTTTGCAACCGTACAAGTTGGTGAATAACAATTACTGCTGTTATCACTGCGGCAAGAAAATGCCCACTCTAATCAAGCTGTGTCGTCACACGATCTTGCATTACCAGCGGTTCACTTGCGACACTTGCGGTCGTAACTATCTCTCACACGAGGCTTTAAAGTACCATATTAAATGCATCCATGCAGTTACGAAACACGTGTGTAGGAAGTGCTGGAAAGAATACCCCACACTGGAGCAAAAAAAGGCACACGTTAGGGCATCAAAACCATGCTGGACTTTCTGCTGCATAGTCTGCGGCGAGAGATTCCAATCCTGGGAACATAAGCAGAAGCACCTACAAGCAGAACATGGCTACGAAAAAATTGTCTATAACTGTCCAGATTGTGAGGAAAAATTCACCTCGAGAAAGTATTTTTATACACATTATAAGCTCGCACATACTGATGAAGGATTTCAATGCGCTTGCTGTGGACTCAAATTTAATACACAGAAACGGTTAGAAGACCACTCTCGCGGACATACAGGAGAGAAACAGTTTATGTGCAATATTTGCTCCAAGAGTTTCATGAGGCAGAACAGTCTCACGCAGCATATGTGGATCCACAGCGAAAACAAGAGGTTCGTCTGTATGTTGTGTGAAAAGCAGTTTGCACAAAAAGTTAGCTTGAAAACTCATATGAAGACCACTCATCCTGATATTTCTATTGATATTTAA
- Protein Sequence
- MCVYCGDSYTDATLFRQHMKKEHFSFKVRTAFAHIAYECYLKIDCTEMACRICFESFARIDDIARHLNERHDAKINFDFQLGLHPYRFLQDRLMCGICDLNFPCMRQLSRHMSSHFQNFTCDTCGKSYTTNSSLQHHIRFTHIAAARICRKCKQTFSSLEAKREHTINSPNCWMYQCLVCLERFMTWPAKERHLVMAHGQSRKSYSCSECSLSFTTRNAYRGHFNTTHAEVNFPCAHCGRKFASKRYLEQHMLVHTGIKTFHCNVCSKSFPRKKNLVQHMWTHSDCKRFECSSCKKQFNQRHSYKAHMKGHHPEISEDKWVVLRGKAITCVYCCEGYEDPTHFRRHFDVHHQEFTIGTAFHHMSSLKEYLKVDICNLKCRLCFQPCEKIDDVAQHLKEAHSDVAKKLNLEFDVGLQPYKLVNNNYCCYHCGKKMPTLIKLCRHTILHYQRFTCDTCGRNYLSHEALKYHIKCIHAVTKHVCRKCWKEYPTLEQKKAHVRASKPCWTFCCIVCGERFQSWEHKQKHLQAEHGYEKIVYNCPDCEEKFTSRKYFYTHYKLAHTDEGFQCACCGLKFNTQKRLEDHSRGHTGEKQFMCNICSKSFMRQNSLTQHMWIHSENKRFVCMLCEKQFAQKVSLKTHMKTTHPDISIDI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00445450;
- 90% Identity
- iTF_00037106; iTF_00906420; iTF_00907269;
- 80% Identity
- -