Lorn015151.1
Basic Information
- Insect
- Lithophane ornitopus
- Gene Symbol
- -
- Assembly
- GCA_948473465.1
- Location
- OX419643.1:5317084-5320397[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0016 0.12 13.2 0.4 3 23 2 23 1 23 0.96 2 20 0.033 2.3 9.1 0.1 3 23 50 71 48 71 0.94 3 20 0.077 5.4 8.0 1.2 2 23 94 115 93 115 0.96 4 20 5.7e-07 4e-05 24.1 3.5 1 23 119 142 119 142 0.96 5 20 0.44 31 5.6 0.4 3 19 149 165 148 167 0.89 6 20 0.12 8.7 7.3 0.1 1 23 175 198 175 198 0.95 7 20 0.0016 0.11 13.2 1.7 1 23 205 228 205 228 0.97 8 20 2.1e-06 0.00014 22.3 1.1 1 23 233 255 233 255 0.98 9 20 2.8e-05 0.002 18.8 2.6 1 23 261 283 261 283 0.92 10 20 0.0031 0.22 12.3 7.1 1 23 289 311 289 312 0.95 11 20 4.2 3e+02 2.5 4.0 2 23 391 412 390 413 0.92 12 20 2.6 1.8e+02 3.2 0.8 2 23 440 462 439 462 0.94 13 20 1.1 76 4.4 6.7 1 23 487 509 487 509 0.95 14 20 0.38 27 5.8 3.2 1 21 513 533 513 536 0.94 15 20 0.52 37 5.3 0.2 1 21 541 561 541 562 0.94 16 20 1.3 95 4.0 3.3 3 23 570 592 568 592 0.89 17 20 0.00027 0.019 15.7 2.9 1 23 599 622 599 622 0.96 18 20 0.099 6.9 7.6 2.5 1 23 627 649 627 649 0.95 19 20 3.4e-05 0.0024 18.5 0.8 1 20 655 674 655 677 0.94 20 20 0.00018 0.013 16.2 0.9 1 23 683 706 683 706 0.94
Sequence Information
- Coding Sequence
- ATGTGCGTATATTGCGGTGACAGCTACACCGACGCCACGCTGTTTCGACAGCACATGAAGAAAGAACATTTCTCCTTCAAAGTCCGAACCGCTTTCGCTCATATTGCTTACGAGTGCTACCTCAAAATCGATTGCACAGAAATGGCGTGCAGAATTTGCTTTGAATCCTTCGCAAGAATTGACGATATTGCACGACATTTAAACGAGAGACATGACGCCAAAATCAACTTTGACTTCCAATTAGGACTACATCCCTACAGATTCTTACAAGACAGACTCATGTGCGGGATATGTGATCTAAACTTCCCTTGTATGCGACAGCTCAGTCGTCACATGTCTTCACACTTCCAGAACTTCACGTGCGATACTTGCGGCAAGTCGTACACGACAAACAGCTCCTTGCAGCACCATATTCGATTCTCGCACATAGCAGCCGAGAGAATATGCAGAAAATGCAAACAGACGTTCAGTTCTTTAGAAGCTAAGAGAGAGCATACAGTCAATTCTCCCAGTTGTTGGATGTATCAGTGTCTTGTTTGCCTAGAGCGATTCATGACATGGCCTGCCAAAGAACGACATTTAGTAATGGCTCATGGGCAATCCAGAAAGTCCTATTCTTGTTCTGAATGCAGTCTAAGCTTTACAACGAGAAATGCATATAGAGGGCATTTTAATACGACCCACGCTGAAGTCAACTTCCCTTGCGCGCACTGTGGACGGAAATTCGCCTCCAAAAGATATTTGGAACAGCACATGCTAGTTCACACAGGCATAAAAACGTTTCATTGTAATGTGTGCTCTAAATCTTTTCCGAGAAAGAAAAATCTTGTTCAGCACATGTGGACTCATAGTGACTCTAAGAGGTTTGAGTGCAGGTCTTGTAAAAAGCAGTTCAATCAAAGACATAGTTATAAGGCGCATATGAAGGGTCACCATCCTGAGATATCTGAAGATAAATGGCGTACACGTATCAAACCATTTTATTTTGACCCGAACAATACACTACAACGAATACTCTCTAAGTGTCCGTTAAAAGAAAAAAGTGAGCCGACCAGTCACTGCGACATTTTCTTTTTGTTTCTAGAACCACATTTATGGGCGAAAGAGAACGCGGAGATTGTGTTGCAATATTCAACCCTGTACCCATTCAGATTGCGAGGAAAAGCTATCACTTGCGTCTACTGCTGCGAAGGCTATGAGGACCCCACGCATTTCAGAAGACACTTCGACATCCACCACCAAGAGTTCACCATCGGCACGGCATTCCACCACATGAGTAGCTTAAAAGAATACCTCAAAGTCGATATTTGCAACCTTAAATGCAGACTGTGTTTCCAACCTTGTGAGAGAATCGATGATGTCGCTCAGCACTTGAAGGAGTCACATTCAGATGTTGCAAAGAAATTAAACCTCGAATTTGATATAGGTTTGCAACCTTACAAACTGGTGAATAACAATTACTGCTGCTATCACTGCGGAAAAAAAATGCCCACTCTAATCAAGTTGTGTCGTCACACAATCTTGCATTACCAGCGGTTCACTTGCGACACTTGCGGTCGTAACTACCTCTCACACGAGGCTTTAAAGTACCATATTAAATGCATCCATGCAGTTACGAAACATGTGTGTAGGAAGTGCTGGACAGAATATCCCACCCTGGAACAAAAGAAGGCACATGTTAGGGCATCAAAACAATGCTGGACTTTCTGCTGTATAGTCTGCGGCGATAGATTCCAATCCTGGGAACATAAGCAGAAACACCTACAATCAGAACATGGATATGAAAAGATAGTCTATACCTGTCCTGATTGTGAAGAAAAATTCACCTCCAGAAAGTATTTTTATACACATTATAAGCTCTCACATACTGATGAAGGATTCCAATGCGCTTGCTGTGGACTCAAGTTTAATACACAGAAACGATTGGAAGACCACTCTCGCGGAcatacaggagagaaacagtttatgtgcaccatttgctccaagagttttatgaggcagaacagtctgacgcagcatatgtggatccacagtgaaaccaagagatttgtctgtattttgtgtgaaaagcagtttgcacaaaaagttagcttgaagactcatatgaagacCACGCATCCTGATGTTACTATTGATATTTAA
- Protein Sequence
- MCVYCGDSYTDATLFRQHMKKEHFSFKVRTAFAHIAYECYLKIDCTEMACRICFESFARIDDIARHLNERHDAKINFDFQLGLHPYRFLQDRLMCGICDLNFPCMRQLSRHMSSHFQNFTCDTCGKSYTTNSSLQHHIRFSHIAAERICRKCKQTFSSLEAKREHTVNSPSCWMYQCLVCLERFMTWPAKERHLVMAHGQSRKSYSCSECSLSFTTRNAYRGHFNTTHAEVNFPCAHCGRKFASKRYLEQHMLVHTGIKTFHCNVCSKSFPRKKNLVQHMWTHSDSKRFECRSCKKQFNQRHSYKAHMKGHHPEISEDKWRTRIKPFYFDPNNTLQRILSKCPLKEKSEPTSHCDIFFLFLEPHLWAKENAEIVLQYSTLYPFRLRGKAITCVYCCEGYEDPTHFRRHFDIHHQEFTIGTAFHHMSSLKEYLKVDICNLKCRLCFQPCERIDDVAQHLKESHSDVAKKLNLEFDIGLQPYKLVNNNYCCYHCGKKMPTLIKLCRHTILHYQRFTCDTCGRNYLSHEALKYHIKCIHAVTKHVCRKCWTEYPTLEQKKAHVRASKQCWTFCCIVCGDRFQSWEHKQKHLQSEHGYEKIVYTCPDCEEKFTSRKYFYTHYKLSHTDEGFQCACCGLKFNTQKRLEDHSRGHTGEKQFMCTICSKSFMRQNSLTQHMWIHSETKRFVCILCEKQFAQKVSLKTHMKTTHPDVTIDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00445450;
- 90% Identity
- iTF_00173464;
- 80% Identity
- -