Alit040405.1
Basic Information
- Insect
- Agrochola litura
- Gene Symbol
- -
- Assembly
- GCA_949152395.1
- Location
- OX424519.1:7114536-7118349[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 3.5e-05 0.0043 18.8 0.2 2 23 31 53 30 53 0.96 2 19 0.25 31 6.7 0.1 3 23 80 101 78 101 0.94 3 19 0.038 4.7 9.3 1.1 2 23 124 145 123 145 0.96 4 19 7.7e-07 9.6e-05 24.0 3.7 1 23 149 172 149 172 0.96 5 19 1.1 1.3e+02 4.7 0.3 3 19 179 195 178 197 0.88 6 19 0.058 7.2 8.7 0.1 1 23 205 228 205 228 0.95 7 19 0.002 0.25 13.3 1.7 1 23 235 258 235 258 0.97 8 19 2.5e-06 0.00031 22.4 1.1 1 23 263 285 263 285 0.98 9 19 3.4e-05 0.0042 18.9 2.6 1 23 291 313 291 313 0.92 10 19 0.0011 0.14 14.1 7.3 1 23 319 341 319 342 0.95 11 19 4.8 6e+02 2.6 4.0 2 23 359 380 358 381 0.92 12 19 1.3 1.6e+02 4.4 6.7 1 23 455 477 455 477 0.95 13 19 0.46 58 5.9 3.2 1 21 481 501 481 504 0.94 14 19 0.63 79 5.4 0.2 1 21 509 529 509 530 0.94 15 19 2.7 3.4e+02 3.4 2.5 3 23 538 560 537 560 0.86 16 19 0.00071 0.089 14.7 2.7 1 23 567 590 567 590 0.96 17 19 0.69 86 5.3 2.5 1 23 595 617 595 617 0.95 18 19 4.1e-05 0.0051 18.6 0.8 1 20 623 642 623 645 0.94 19 19 0.00022 0.028 16.3 0.9 1 23 651 674 651 674 0.94
Sequence Information
- Coding Sequence
- ATGCGTCCGTTATGCATCGCGCGACGGAATGCAGAGATTATCGTCCTGAACGCCACGGTATACCCCTTCCGACTGCCGGACAAGGCCCTCATGTGCGTATATTGCGGAGAGAGCTACACAGACGCCGCGCTGTTTCGACAGCACATGAAGAAAGAACATTTCTCCTTCAAAGTCAGAACCGCGTTCGCTCATATTGCTTACGAGTGCTACCTCAAAATCGATTGCACAGAAATGGCCTGCAGATTCTGCTTTGAATCGTTCGCAAGTATTGACGATATTGCACGACATTTAAACGAGAGACATGACGCCAAAATCAACTTTGACTTCCAATTAGGACTACATCCCTACAGATTCTTGCAAGACAGACTCATGTGCGGGATCTGTGATCTAAACTTCCCCTGTCTGCGACAGCTAAGTCGTCACATGTCTTCACATTTCCTGAACTTTACGTGCGACACTTGCGGCAAGTCTTACACGACGAACAGCTCCTTGCAGCACCACATTCGATTCACGCACATAGCAGGCGAGAAAATATGCAGGAAATGCAAACTGACGTTTAGTTCTTTAGAGGCTAAGAGGGAGCATACAGTTAATTCTCCCGGCTGTTGGATGTATCAGTGTCTTATGTGCCTAGAGCGATTCATAACATGGCCTGCCAAAGAACGACATTTAGTAATGGCTCATGGGCAATCCAGAAAGTCCTATTCTTGTTCTGAATGCAGTTTAAGCTTTACAACGAGAAATGCCTATAGAGGGCATTTTAATACGACCCACGCCGAAGTCAACTTCCCTTGCGCGCACTGCGGGCGGAAATTCGCCTCCAAAAGATATTTGGAACAGCACATGCTAGTCCACACGGGCTTGAAAACGTTTCATTGTAATGTGTGCTCTAAATCTTTTCCGAGAAAGAAGAATCTTGTTCAGCACATGTGGACTCATAGTGACTCTAAGAGGTTTGAGTGCAAGTCTTGTAAAAAGCAGTTCAACCAAAGACATAGTTACAAGGCGCATATGAAGGGACACCATCCTGAGATATCTGAAGATAAATGGGTGGTATTGCGAGGGAAAGCTATCACTTGCGTCTACTGCTGCGAAGGCTATGAGGACCCCACGCATTTCAGAAGACACTTCGACGTCCACCACCAAGAGTTCACCATCGGTACGGCCTTCCACcacatgagtagcttaaaagaATACCTCAAAGTCGATATCTGCAACCTAAAATGCAGACTGTGTTTCCAACCTTGTGAGAAAATCGATGATGTCGCTCAACACTTGAAGGAGTCGCATTCAGATGTTGCAAAGAAATTAAACCTCGAATTCGATGTGGGTTTGCAACCTTACAAGTTGGTGAATAACAATTACTGCTGCTATCACTGTGGCAAGAAAATGCCCACTTTAATCAAGTTGTGTCGTCACACGATCTTGCATTACCAGCAGTTTACTTGCGACACTTGCGGCCGTAACTACCTCTCACACGAGGCTTTAAAGTACCATATTAAATGCATCCATGCAGTTACGAAACACGTGTGTAGGAAGTGCTGGACAGAATATCCCACACTGGAGCAAAAGAAGGCACATGTTAGGGCGTCAAAACCATGCTGGACTTTCTGCTGCATAGTTTGCGGGGATCGATTCCAATCCTGGGAACATAAGCAGAAACATCTACAAGCAGAACATGGATACGAAAAGATAGTCTATAACTGTCCAGATTGTGAAGAAAAATTCACCTCGAGAAAGTATTTTTATACACATTATAAGCTCTCACATACTGATGAAGGATTCCAATGCGCTTGCTGTGGGCTCAAGTTTAATACACAGAAACGATTAGATGACCACTCTCGCGGACATACAGGAGAGAAAATGTTTATGTGCACTATTTGCTCCAAGAGTTTCATGAGGCAGAACAGTCTGACGCAGCACATGTGGATTCACAGTGAAACCAAGAGATTCGTCTGTATTTTGTGTGAAAAGCAGTTTGCACAAAAAGTTAGCTTGAAGACTCATATGAAGACCACTCATCCTGATGTTGTTGTTGATATTTAA
- Protein Sequence
- MRPLCIARRNAEIIVLNATVYPFRLPDKALMCVYCGESYTDAALFRQHMKKEHFSFKVRTAFAHIAYECYLKIDCTEMACRFCFESFASIDDIARHLNERHDAKINFDFQLGLHPYRFLQDRLMCGICDLNFPCLRQLSRHMSSHFLNFTCDTCGKSYTTNSSLQHHIRFTHIAGEKICRKCKLTFSSLEAKREHTVNSPGCWMYQCLMCLERFITWPAKERHLVMAHGQSRKSYSCSECSLSFTTRNAYRGHFNTTHAEVNFPCAHCGRKFASKRYLEQHMLVHTGLKTFHCNVCSKSFPRKKNLVQHMWTHSDSKRFECKSCKKQFNQRHSYKAHMKGHHPEISEDKWVVLRGKAITCVYCCEGYEDPTHFRRHFDVHHQEFTIGTAFHHMSSLKEYLKVDICNLKCRLCFQPCEKIDDVAQHLKESHSDVAKKLNLEFDVGLQPYKLVNNNYCCYHCGKKMPTLIKLCRHTILHYQQFTCDTCGRNYLSHEALKYHIKCIHAVTKHVCRKCWTEYPTLEQKKAHVRASKPCWTFCCIVCGDRFQSWEHKQKHLQAEHGYEKIVYNCPDCEEKFTSRKYFYTHYKLSHTDEGFQCACCGLKFNTQKRLDDHSRGHTGEKMFMCTICSKSFMRQNSLTQHMWIHSETKRFVCILCEKQFAQKVSLKTHMKTTHPDVVVDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00445450;
- 90% Identity
- iTF_00173464;
- 80% Identity
- -