Acen046622.1
Basic Information
- Insect
- Atethmia centrago
- Gene Symbol
- -
- Assembly
- GCA_905333075.2
- Location
- HG995387.1:21941610-21943721[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.1e-08 1.5e-05 26.4 0.1 2 39 16 53 15 59 0.85
Sequence Information
- Coding Sequence
- ATGGTTCGTACCTACAAAAGAAAAACGAATCGACAAAAATGGGACGAGGCAGACATGAGAAGAGCAGTGTCGGCTGTACTACTCAATAGAATGGGGTTTCTCAGGGCTTCTGCTAATTATACTGTGCCAAAATCAACTTTAGAACGACGAGTAAAAAAAGCTCGCCGATCTCAGAATGCAGATACAGATTCGGAAAATGACTACGGGAAAAAAGGTTTAGGGCACTTCAAACCAGTGTTTACAAAAGAGCAAGAAGAAGAGTTGGCCACTTATGTAAAAATGATGCAATCCCGATTATTCGGAATTACTGGGACAGAGCTAAGGATACTAGCTTTCCAACTagctataaaaaataatatcgagAATCCCTTTAATCGAGAAGATGGTATGGCAGGGAAGGACTGGCTTAGTGGGTTTCTAAAACGCCATCCAGATATATCATACAGGCAACCAGAACCAACTTCTGCGGCTAGGGCGATGGGATTTAATAGAGTCGCTGTAAATAGCTTTTTTGATCTATTAGAAAGTGTTGTGGATAAACATGCAGTGACTGCAGATAGAATGTATAACGTGGATGAAACGGGTATTAGCACCGTGCCGAAAAGTCAGTCCAAAATTTTATCACTGAAAGGACAGAAGCAAGTTGGATGTCTAACATCAGGAGAAAGAGGCCAGTTAGTGACAGCTGAAATATGTTTTAGCGCGACGGGAGTATATTTGCCCCCAATGCTAATTTATGCCAGGAAACGCATGAAAAATGAGCTTCTAGATGGTGCACCAGCAGGCTTTTGGGGAACCTGCAGCGACAATGGCTGGATAACTTGCCCAATTTTTTTCGATTGGTTCAAACGTTTCGTGGACTTTACAAAGCCTTCTAAAGACAAACCAGTTTTGCTTATGTTAGATGGCCACGTGTCCCACACCAAAAATCTGGACCTCATAGATTATGCCAGAGAAAACAATGTTATATTGTTATGTACACCGCCACATTGCACTCATAGAATTCAACCCTTGGACGTATCCTTCATGCGGCCACTAAGCACATTTTACAGTGCTGAAGTAAAAAAGTGGTTAAGAGATCATCCCGGACGCGTAGTAACTTCTTACCAAGTTGCAGATCTTTTTGGGAAAGCTTTTATACAAGCAGCAACCATGAGCACAGCTATAAATGGTTTTAAAAAATGTGGCATATGGCCTGTTGACAGGAATGTTTTCACAGAAGCAGATTTTATAGCTGCGGAAACCACCAACACTGAGACCCTTGTCATTGAAGGCATAAATACGCAAAATGCAGCAGACGTACCAACACCATACTGCGAACCTTCATCGTCAGGAATTTCACAAGCAGCTCAATTGAATCCGCCCGTATCAAACCCAAATAACTTAAATGAACATGCTATGCCTACCAACTCATCTGTGTCGGCTTCAATGGCTAGTCAAAAAAGTcctgaaaggcaaatttcacaaGCAGTCCAATTAAATATGTCTATTTTAAACTTCGATGAAAACATTTCTGAACCAATCATACCCGCCGTCCAAGACAACTTGAATCAACAAGCTATGTCCACCTCCATGGTTTCAGTTTCTACACAGCCATTTGAACCTCTCGCGTCCACTTCAAGGGCTAAAGATAAAACTCCTGAAAGgcaaattttaaaagaaaagagtTCATTTACAGTTACACCTGAAAATATTATGGCAATTCCCAAAGAATTTAGAACAAAGGAAAGACAAAAGAGAAAACGTGGGAAAACGGCTATACTTACGGATTCCCCGTACAAAAATGACCTGACTAAGGAAAAAAATGCAAAGGAAAGTAAGGAAAATAAGAAGAAGACTGCACCAAAGAAGAAAAAGGACCAAAGAAAAACATCCaaaccaaataataaaaaaaaggctAAGAAACAAAAGCAAAGGGAAGCCACATTTACTAGTTCATCGGAAGAAGACGAAGACGACTGTGCTTGCATATATTGTGGTTACTTGTATTCGCAGTCAGATGAGGGTTGGGTTGCGTGTAGCTCTTGTGCGGGTTGGGCACACAATTCCTGCGCCGGAGTagacgatgatgatgacgagGCACACATTTGTGCACAATGTTTGCCTGACTAA
- Protein Sequence
- MVRTYKRKTNRQKWDEADMRRAVSAVLLNRMGFLRASANYTVPKSTLERRVKKARRSQNADTDSENDYGKKGLGHFKPVFTKEQEEELATYVKMMQSRLFGITGTELRILAFQLAIKNNIENPFNREDGMAGKDWLSGFLKRHPDISYRQPEPTSAARAMGFNRVAVNSFFDLLESVVDKHAVTADRMYNVDETGISTVPKSQSKILSLKGQKQVGCLTSGERGQLVTAEICFSATGVYLPPMLIYARKRMKNELLDGAPAGFWGTCSDNGWITCPIFFDWFKRFVDFTKPSKDKPVLLMLDGHVSHTKNLDLIDYARENNVILLCTPPHCTHRIQPLDVSFMRPLSTFYSAEVKKWLRDHPGRVVTSYQVADLFGKAFIQAATMSTAINGFKKCGIWPVDRNVFTEADFIAAETTNTETLVIEGINTQNAADVPTPYCEPSSSGISQAAQLNPPVSNPNNLNEHAMPTNSSVSASMASQKSPERQISQAVQLNMSILNFDENISEPIIPAVQDNLNQQAMSTSMVSVSTQPFEPLASTSRAKDKTPERQILKEKSSFTVTPENIMAIPKEFRTKERQKRKRGKTAILTDSPYKNDLTKEKNAKESKENKKKTAPKKKKDQRKTSKPNNKKKAKKQKQREATFTSSSEEDEDDCACIYCGYLYSQSDEGWVACSSCAGWAHNSCAGVDDDDDEAHICAQCLPD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01440962; iTF_00147300; iTF_00147308; iTF_00147310; iTF_00147311; iTF_00121361; iTF_00121362; iTF_01264549; iTF_01264472; iTF_00850632; iTF_00850627; iTF_00850633; iTF_00850634; iTF_00850635; iTF_00124191;
- 90% Identity
- iTF_00124191;
- 80% Identity
- -