Asor018299.1
Basic Information
- Insect
- Apamea sordens
- Gene Symbol
- -
- Assembly
- GCA_945859755.1
- Location
- CAMAOQ010000048.1:2470699-2472798[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6e-09 4.9e-06 26.9 0.1 2 40 16 54 15 59 0.84
Sequence Information
- Coding Sequence
- ATGGTTCGTACctacaaaagaaaaactaatCGACAAAAATGGGACGAAGCAGACATGAGAAGAGCAGTGTCAGCTGTGCTTCTCAATAGAATGGGGTTTCTCAGGGCTTCTGCTACTTATACTGTGCCAAAATCTACTTTAGAACGACGAGTTAAAAAAGCTCGCCAGTCTCAGAATGCAGATACAGATTCAGATAATGACTATGGGAAGAAAGGTTTAGGGCACTTCAAACCAGTGTTTACAAAAGAGCAAGAAGAAGAGTTGGCCTCTTATGTAAAAATGATGCAATCCCGATTATTCGGAATTACTGGGACAGAGCTAAGGATACTAGCTTTCCAACTagccataaaaaataatatcgagaATCCCTTTAATCGAGAAGATGGTATGGCAGGGAAGGACTGGCTTAGTGGGTTTTTAAAACGCCATCCAGATATATCGTACAGGCAACCAGAACCAACTTCTGCGGCTAGGGCGATGGGATTTAATAGAGTCGCTGTAAATAGCTTTTTTGATCTATTAGAAAGTGTTGTGGATAAACATGCACTGACTGCAGATAGAATGTATAACGTGGATGAAACGGGTATTAGCACTGTGCCAAAAAGTCAGTCCAAAATTCTATCACTGAAAGGACAGAAGCAAGTTGGATGTCTAACATCAGGAGAAAGAGGCCAGCTAGTGACAGCTGAAATATGTTTTAGCGCGACGGGAGTATATTTGCCACCAATGCTAATTTATGCCAGGAAACGCATGAAGAACGAGCTTCTAGATGGTGCACCAGGCTTTTGGGGAACCTGCAGTGACAATGGCTGGATAACTTGCCCAATTTTTTTCGATTGGTTCAAACGTTTCGTGGACTTTACAAAGCCTTCTAAAGACAAACCAGTTTTGCTTATGTTAGACGGCCACGTATCCCACACCAAAAATCTGGATCTCATAGATTATGCTAGAGAACACAGTGTTATATTGTTGTGCACACCGCCACATTGCACTCATAGAATTCAACCCTTGGACGTGTCATTCATGCGACCACTAAGCACATATTACAGTGCTGAAGTAAAGAAGTGGTTAAGAGATCATCCTGGACGCGTAGTAACTTCCTACCAAGTTGCAAACCTTTTTGGGAAAGCTTTTATACAAGCATCAACCATGAGCACTGCTATAAATGGTTTTAAAAAATGTGGCATATGGCCTGTTGACAGGAATGTTTTCACAGAGGCAGATTTTATAGCTGCGGAAACCACCAACACTGAGACCCTTGTTATTGAAGGCCTAAATACGCAAAATGCAGGAGACGTACCAACACCATACTGCGAACCTTCAACTTCAGGAATTTCACAAGCAGCTCAATTGAATCCTCCCGTATCAAACCCCAATAACTTACATGAACATGCTATGCCTACCAACTCTTCTGTGTCGACTTCAATGGCTAGTCATAAAAGTCCTGAAAGGCAAATTTCACGAGCAGTCCAATTAAATATGTCTATATTAAACCTCGATGAAAACATTCCTGAACCAATCATACCCGCTGTCCAAGACAACATAAATCAACAAGCTATGTCCACCTCCATGGTTTCAGTTTCTACACAGCCATTTGAACCTCTCGCATCCACTTCCAGGGCTAAAGATAAAACTCCTGAAAGgcaaattttaaaagaaaagagtTCATTTGCAGTTACACCTGAAAATATTATGGCAATTCCCAAAGAATTAAGAACTAAGGAAAGACAAAAGAGAAAACGTGGGAAAACGGCTATACTTACGGATTCTCCGTATAAAAATGACCTGACTAAGGAAAAGAAtgcaaaggaaaataaaaagaagactgcaccaaagaagaaaaacaaccaaagaaaaataatcaaaccaaataataaaaaaaaggctaAGAAACAAAAGCAAAAGGAAGCCACATTTACTAGTTCATCGGAAGAAGACGACGATGACTGTGCTTGCATATATTGTGGTTACTTGTATTCGCAGTCAGACGAGGGTTGGGTTGCGTGTAGCTCTTGTGCGGGTTGGGCACACAATTCCTGCGCCGGAGTAGACGAAGATGATGACGAGGCACACATTTGTGCACAATGTTTGCCTGACTAA
- Protein Sequence
- MVRTYKRKTNRQKWDEADMRRAVSAVLLNRMGFLRASATYTVPKSTLERRVKKARQSQNADTDSDNDYGKKGLGHFKPVFTKEQEEELASYVKMMQSRLFGITGTELRILAFQLAIKNNIENPFNREDGMAGKDWLSGFLKRHPDISYRQPEPTSAARAMGFNRVAVNSFFDLLESVVDKHALTADRMYNVDETGISTVPKSQSKILSLKGQKQVGCLTSGERGQLVTAEICFSATGVYLPPMLIYARKRMKNELLDGAPGFWGTCSDNGWITCPIFFDWFKRFVDFTKPSKDKPVLLMLDGHVSHTKNLDLIDYAREHSVILLCTPPHCTHRIQPLDVSFMRPLSTYYSAEVKKWLRDHPGRVVTSYQVANLFGKAFIQASTMSTAINGFKKCGIWPVDRNVFTEADFIAAETTNTETLVIEGLNTQNAGDVPTPYCEPSTSGISQAAQLNPPVSNPNNLHEHAMPTNSSVSTSMASHKSPERQISRAVQLNMSILNLDENIPEPIIPAVQDNINQQAMSTSMVSVSTQPFEPLASTSRAKDKTPERQILKEKSSFAVTPENIMAIPKELRTKERQKRKRGKTAILTDSPYKNDLTKEKNAKENKKKTAPKKKNNQRKIIKPNNKKKAKKQKQKEATFTSSSEEDDDDCACIYCGYLYSQSDEGWVACSSCAGWAHNSCAGVDEDDDEAHICAQCLPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00172795;
- 90% Identity
- iTF_00121362; iTF_00121361; iTF_01440962; iTF_00147300; iTF_00147305; iTF_00147308; iTF_00147310; iTF_00147311; iTF_00172795; iTF_00850632; iTF_00850627; iTF_00850633; iTF_00850634; iTF_00850635;
- 80% Identity
- -